guardlink 1.4.1 → 1.4.2

package/dist/mcp/server.js

@@ -76,7 +76,7 @@ function invalidateCache() {
 export function createServer() {
     const server = new McpServer({
         name: 'guardlink',
-        version: '1.4.0',
+        version: '1.4.2',
     });
     // ── Tool: guardlink_parse ──
     server.tool('guardlink_parse', 'Parse GuardLink annotations from the project and return the full threat model as JSON', { root: z.string().describe('Project root directory').default('.') }, async ({ root }) => {
@@ -226,7 +226,8 @@ export function createServer() {
     server.tool('guardlink_annotate', 'Build an annotation prompt with project context, GuardLink reference docs, and GAL syntax guidelines. The calling agent should use this prompt to read source files and add security annotations directly. Returns the prompt text — the agent should then read files, decide annotation placement, and write comments.', {
         root: z.string().describe('Project root directory').default('.'),
         prompt: z.string().describe('Annotation instructions (e.g., "annotate auth endpoints for OWASP Top 10")'),
-    }, async ({ root, prompt }) => {
+        mode: z.enum(['inline', 'external']).describe('Annotation placement mode — inline (default) or external (externalized .gal files)').default('inline'),
+    }, async ({ root, prompt, mode }) => {
         let model = null;
         try {
             const result = await getModel(root);
@@ -235,15 +236,19 @@ export function createServer() {
             }
         }
         catch { /* no model yet — fine */ }
-        const annotatePrompt = buildAnnotatePrompt(prompt, root, model);
+        const annotatePrompt = buildAnnotatePrompt(prompt, root, model, mode);
         return {
             content: [{ type: 'text', text: JSON.stringify({
                         mode: 'agent',
-                        message: 'Annotation prompt built with project context. Read the source files in the project directory, then add GuardLink annotations as code comments following the guidelines in the prompt. After annotating, call guardlink_parse to verify the annotations were parsed correctly.',
+                        message: `Annotation prompt built with project context. Read the source files in the project directory, then add GuardLink annotations using ${mode === 'external' ? 'associated .gal files' : 'inline source comments'} following the guidelines in the prompt. After annotating, call guardlink_parse to verify the annotations were parsed correctly.`,
                         prompt: annotatePrompt,
                         guidelines: [
-                            'Add annotations as comments directly above security-relevant code',
-                            'Use the project\'s comment style (// for TS/JS/Rust/Go, # for Python/Ruby/Shell)',
+                            mode === 'external'
+                                ? 'Write externalized annotations into associated .gal files using @source blocks'
+                                : 'Add annotations as comments directly above security-relevant code',
+                            mode === 'external'
+                                ? 'Keep definitions in .guardlink/definitions.* and use raw GAL lines without comment prefixes'
+                                : 'Use the project\'s comment style (// for TS/JS/Rust/Go, # for Python/Ruby/Shell)',
                             'After annotating, call guardlink_parse to verify results',
                         ],
                     }, null, 2) }],
@@ -426,7 +431,7 @@ export function createServer() {
     // ── Tool: guardlink_review_accept ──
     server.tool('guardlink_review_accept', 'Record a governance decision for an unmitigated exposure. Writes @accepts + @audit (for accept) or @audit (for remediate) directly into the source file. IMPORTANT: This modifies source files. Only call after explicit human confirmation of the decision and justification.', {
         root: z.string().describe('Project root directory').default('.'),
-        exposure_id: z.string().describe('Exposure ID from guardlink_review_list (format: "file:line")'),
+        exposure_id: z.string().describe('Exposure ID from guardlink_review_list'),
         decision: z.enum(['accept', 'remediate', 'skip']).describe('accept = risk acknowledged; remediate = planned fix; skip = no action'),
         justification: z.string().describe('Required explanation for accept/remediate decisions'),
     }, async ({ root, exposure_id, decision, justification }) => {
@@ -453,7 +458,7 @@ export function createServer() {
         catch { }
         const verb = decision === 'accept' ? 'Accepted' : 'Marked for remediation';
         return {
-            content: [{ type: 'text', text: `${verb}: ${target.exposure.asset} → ${target.exposure.threat} [${target.exposure.severity}]\nJustification: ${justification}\n${result.linesInserted} annotation line(s) written to ${target.exposure.location.file}` }],
+            content: [{ type: 'text', text: `${verb}: ${target.exposure.asset} → ${target.exposure.threat} [${target.exposure.severity}]\nJustification: ${justification}\n${result.linesInserted} annotation line(s) written to ${result.targetFile}` }],
         };
     });
     // ── Tool: guardlink_workspace_info ──

package/dist/mcp/server.js.map

@@ -1 +1 @@
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package/dist/parser/clear.d.ts

@@ -1,6 +1,7 @@
 /**
  * GuardLink — Annotation clearing utility.
- * Scans project source files and removes all GuardLink annotation comment lines.
+ * Scans project source files and removes all GuardLink annotation lines.
+ * Standalone .gal files are treated as raw annotation text.
  *
  * Used by `guardlink clear` and `/clear` to let users start fresh with annotations.
  *

package/dist/parser/clear.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"clear.d.ts","sourceRoot":"","sources":["../../src/parser/clear.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;GAaG;AA0CH,MAAM,WAAW,uBAAuB;IACtC,IAAI,EAAE,MAAM,CAAC;IACb,OAAO,CAAC,EAAE,MAAM,EAAE,CAAC;IACnB,OAAO,CAAC,EAAE,MAAM,EAAE,CAAC;IACnB,qEAAqE;IACrE,MAAM,CAAC,EAAE,OAAO,CAAC;IACjB,uDAAuD;IACvD,kBAAkB,CAAC,EAAE,OAAO,CAAC;CAC9B;AAED,MAAM,WAAW,sBAAsB;IACrC,qDAAqD;IACrD,aAAa,EAAE,MAAM,EAAE,CAAC;IACxB,sDAAsD;IACtD,YAAY,EAAE,MAAM,CAAC;IACrB,iEAAiE;IACjE,OAAO,EAAE,GAAG,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;CAC9B;AA8ED;;GAEG;AACH,wBAAsB,gBAAgB,CAAC,OAAO,EAAE,uBAAuB,GAAG,OAAO,CAAC,sBAAsB,CAAC,CA0CxG"}
+{"version":3,"file":"clear.d.ts","sourceRoot":"","sources":["../../src/parser/clear.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;GAcG;AA0CH,MAAM,WAAW,uBAAuB;IACtC,IAAI,EAAE,MAAM,CAAC;IACb,OAAO,CAAC,EAAE,MAAM,EAAE,CAAC;IACnB,OAAO,CAAC,EAAE,MAAM,EAAE,CAAC;IACnB,qEAAqE;IACrE,MAAM,CAAC,EAAE,OAAO,CAAC;IACjB,uDAAuD;IACvD,kBAAkB,CAAC,EAAE,OAAO,CAAC;CAC9B;AAED,MAAM,WAAW,sBAAsB;IACrC,qDAAqD;IACrD,aAAa,EAAE,MAAM,EAAE,CAAC;IACxB,sDAAsD;IACtD,YAAY,EAAE,MAAM,CAAC;IACrB,iEAAiE;IACjE,OAAO,EAAE,GAAG,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;CAC9B;AAiED;;GAEG;AACH,wBAAsB,gBAAgB,CAAC,OAAO,EAAE,uBAAuB,GAAG,OAAO,CAAC,sBAAsB,CAAC,CAwCxG"}

package/dist/parser/clear.js

@@ -1,6 +1,7 @@
 /**
  * GuardLink — Annotation clearing utility.
- * Scans project source files and removes all GuardLink annotation comment lines.
+ * Scans project source files and removes all GuardLink annotation lines.
+ * Standalone .gal files are treated as raw annotation text.
  *
  * Used by `guardlink clear` and `/clear` to let users start fresh with annotations.
  *
@@ -15,13 +16,13 @@
 import fg from 'fast-glob';
 import { readFile, writeFile } from 'node:fs/promises';
 import { relative } from 'node:path';
-import { stripCommentPrefix } from './comment-strip.js';
+import { isStandaloneAnnotationFile, stripCommentPrefix } from './comment-strip.js';
 // ─── Known GuardLink verbs ──────────────────────────────────────────
 const GUARDLINK_VERBS = new Set([
     'asset', 'threat', 'control',
     'mitigates', 'exposes', 'accepts', 'transfers', 'flows', 'boundary',
     'validates', 'audit', 'owns', 'handles', 'assumes',
-    'comment', 'shield', 'shield:begin', 'shield:end',
+    'comment', 'source', 'shield', 'shield:begin', 'shield:end',
     // v1 compat
     'review', 'connects',
 ]);
@@ -38,6 +39,7 @@ const DEFAULT_INCLUDE = [
     '**/*.html', '**/*.xml', '**/*.svg',
     '**/*.css',
     '**/*.ex', '**/*.exs',
+    '**/*.[gG][aA][lL]',
 ];
 const DEFAULT_EXCLUDE = [
     '**/node_modules/**', '**/dist/**', '**/build/**', '**/.git/**',
@@ -45,11 +47,7 @@ const DEFAULT_EXCLUDE = [
     '**/tests/**', '**/test/**', '**/__tests__/**',
 ];
 // ─── Core logic ─────────────────────────────────────────────────────
-/**
- * Check if a source line contains a GuardLink annotation.
- */
-function isGuardLinkAnnotationLine(line) {
-    const inner = stripCommentPrefix(line);
+function isGuardLinkAnnotationText(inner) {
     if (inner === null)
         return false;
     const trimmed = inner.trim();
@@ -62,16 +60,6 @@ function isGuardLinkAnnotationLine(line) {
     const verb = verbMatch[1];
     return GUARDLINK_VERBS.has(verb);
 }
-/**
- * Check if a line is a continuation description line (-- "...") that follows
- * a GuardLink annotation.
- */
-function isContinuationLine(line) {
-    const inner = stripCommentPrefix(line);
-    if (inner === null)
-        return false;
-    return /^--\s*"/.test(inner.trim());
-}
 /**
  * Remove all GuardLink annotation lines from a file's content.
  * Returns the cleaned content and count of lines removed.
@@ -80,20 +68,21 @@ function isContinuationLine(line) {
  * - Continuation lines (-- "...") that follow an annotation
  * - Empty comment lines that are left between annotations (cleanup)
  */
-function removeAnnotationsFromContent(content) {
+function removeAnnotationsFromContent(content, allowRawAnnotationLines) {
     const lines = content.split('\n');
     const result = [];
     let removed = 0;
     let lastWasAnnotation = false;
     for (let i = 0; i < lines.length; i++) {
         const line = lines[i];
-        if (isGuardLinkAnnotationLine(line)) {
+        const inner = allowRawAnnotationLines ? line : stripCommentPrefix(line);
+        if (isGuardLinkAnnotationText(inner)) {
             removed++;
             lastWasAnnotation = true;
             continue;
         }
         // Remove continuation lines that follow an annotation
-        if (lastWasAnnotation && isContinuationLine(line)) {
+        if (lastWasAnnotation && inner !== null && /^--\s*"/.test(inner.trim())) {
             removed++;
             continue;
         }
@@ -117,22 +106,19 @@ function removeAnnotationsFromContent(content) {
  */
 export async function clearAnnotations(options) {
     const { root, include = DEFAULT_INCLUDE, exclude = DEFAULT_EXCLUDE, dryRun = false, includeDefinitions = false, } = options;
-    // Build exclude list — skip .guardlink/ definitions unless explicitly included
-    const effectiveExclude = includeDefinitions
-        ? exclude
-        : [...exclude, '**/.guardlink/**'];
-    const files = await fg(include, {
+    const candidateFiles = await fg(include, {
         cwd: root,
-        ignore: effectiveExclude,
+        ignore: exclude,
         absolute: true,
         dot: true,
     });
+    const files = candidateFiles.filter(filePath => includeDefinitions || !isDefinitionsFile(relative(root, filePath)));
     const modifiedFiles = [];
     const perFile = new Map();
     let totalRemoved = 0;
     for (const filePath of files) {
         const content = await readFile(filePath, 'utf-8');
-        const { cleaned, removed } = removeAnnotationsFromContent(content);
+        const { cleaned, removed } = removeAnnotationsFromContent(content, isStandaloneAnnotationFile(filePath));
         if (removed > 0) {
             const relPath = relative(root, filePath);
             modifiedFiles.push(relPath);
@@ -145,4 +131,8 @@ export async function clearAnnotations(options) {
     }
     return { modifiedFiles, totalRemoved, perFile };
 }
+function isDefinitionsFile(relPath) {
+    const normalized = relPath.replaceAll('\\', '/');
+    return normalized.startsWith('.guardlink/definitions.');
+}
 //# sourceMappingURL=clear.js.map

package/dist/parser/clear.js.map

@@ -1 +1 @@
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+{"version":3,"file":"clear.js","sourceRoot":"","sources":["../../src/parser/clear.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;GAcG;AAEH,OAAO,EAAE,MAAM,WAAW,CAAC;AAC3B,OAAO,EAAE,QAAQ,EAAE,SAAS,EAAE,MAAM,kBAAkB,CAAC;AACvD,OAAO,EAAE,QAAQ,EAAE,MAAM,WAAW,CAAC;AACrC,OAAO,EAAE,0BAA0B,EAAE,kBAAkB,EAAE,MAAM,oBAAoB,CAAC;AAEpF,uEAAuE;AAEvE,MAAM,eAAe,GAAG,IAAI,GAAG,CAAC;IAC9B,OAAO,EAAE,QAAQ,EAAE,SAAS;IAC5B,WAAW,EAAE,SAAS,EAAE,SAAS,EAAE,WAAW,EAAE,OAAO,EAAE,UAAU;IACnE,WAAW,EAAE,OAAO,EAAE,MAAM,EAAE,SAAS,EAAE,SAAS;IAClD,SAAS,EAAE,QAAQ,EAAE,QAAQ,EAAE,cAAc,EAAE,YAAY;IAC3D,YAAY;IACZ,QAAQ,EAAE,UAAU;CACrB,CAAC,CAAC;AAEH,MAAM,eAAe,GAAG;IACtB,SAAS,EAAE,UAAU,EAAE,SAAS,EAAE,UAAU;IAC5C,SAAS,EAAE,SAAS,EAAE,SAAS,EAAE,SAAS;IAC1C,WAAW,EAAE,SAAS,EAAE,YAAY;IACpC,QAAQ,EAAE,UAAU,EAAE,SAAS,EAAE,QAAQ,EAAE,UAAU;IACrD,SAAS,EAAE,YAAY,EAAE,WAAW;IACpC,UAAU,EAAE,UAAU,EAAE,SAAS;IACjC,SAAS,EAAE,UAAU;IACrB,WAAW,EAAE,UAAU;IACvB,SAAS,EAAE,WAAW;IACtB,WAAW,EAAE,UAAU,EAAE,UAAU;IACnC,UAAU;IACV,SAAS,EAAE,UAAU;IACrB,mBAAmB;CACpB,CAAC;AAEF,MAAM,eAAe,GAAG;IACtB,oBAAoB,EAAE,YAAY,EAAE,aAAa,EAAE,YAAY;IAC/D,mBAAmB,EAAE,cAAc,EAAE,cAAc,EAAE,aAAa;IAClE,aAAa,EAAE,YAAY,EAAE,iBAAiB;CAC/C,CAAC;AAuBF,uEAAuE;AAEvE,SAAS,yBAAyB,CAAC,KAAoB;IACrD,IAAI,KAAK,KAAK,IAAI;QAAE,OAAO,KAAK,CAAC;IAEjC,MAAM,OAAO,GAAG,KAAK,CAAC,IAAI,EAAE,CAAC;IAC7B,IAAI,CAAC,OAAO,CAAC,UAAU,CAAC,GAAG,CAAC;QAAE,OAAO,KAAK,CAAC;IAE3C,mBAAmB;IACnB,MAAM,SAAS,GAAG,OAAO,CAAC,KAAK,CAAC,SAAS,CAAC,CAAC;IAC3C,IAAI,CAAC,SAAS;QAAE,OAAO,KAAK,CAAC;IAE7B,MAAM,IAAI,GAAG,SAAS,CAAC,CAAC,CAAC,CAAC;IAC1B,OAAO,eAAe,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC;AACnC,CAAC;AAED;;;;;;;GAOG;AACH,SAAS,4BAA4B,CAAC,OAAe,EAAE,uBAAgC;IACrF,MAAM,KAAK,GAAG,OAAO,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC;IAClC,MAAM,MAAM,GAAa,EAAE,CAAC;IAC5B,IAAI,OAAO,GAAG,CAAC,CAAC;IAChB,IAAI,iBAAiB,GAAG,KAAK,CAAC;IAE9B,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,KAAK,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;QACtC,MAAM,IAAI,GAAG,KAAK,CAAC,CAAC,CAAC,CAAC;QACtB,MAAM,KAAK,GAAG,uBAAuB,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,kBAAkB,CAAC,IAAI,CAAC,CAAC;QAExE,IAAI,yBAAyB,CAAC,KAAK,CAAC,EAAE,CAAC;YACrC,OAAO,EAAE,CAAC;YACV,iBAAiB,GAAG,IAAI,CAAC;YACzB,SAAS;QACX,CAAC;QAED,sDAAsD;QACtD,IAAI,iBAAiB,IAAI,KAAK,KAAK,IAAI,IAAI,SAAS,CAAC,IAAI,CAAC,KAAK,CAAC,IAAI,EAAE,CAAC,EAAE,CAAC;YACxE,OAAO,EAAE,CAAC;YACV,SAAS;QACX,CAAC;QAED,iBAAiB,GAAG,KAAK,CAAC;QAC1B,MAAM,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;IACpB,CAAC;IAED,2EAA2E;IAC3E,MAAM,KAAK,GAAa,EAAE,CAAC;IAC3B,IAAI,SAAS,GAAG,KAAK,CAAC;IACtB,KAAK,MAAM,IAAI,IAAI,MAAM,EAAE,CAAC;QAC1B,MAAM,OAAO,GAAG,IAAI,CAAC,IAAI,EAAE,KAAK,EAAE,CAAC;QACnC,IAAI,OAAO,IAAI,SAAS;YAAE,SAAS,CAAC,2BAA2B;QAC/D,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;QACjB,SAAS,GAAG,OAAO,CAAC;IACtB,CAAC;IAED,OAAO,EAAE,OAAO,EAAE,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,OAAO,EAAE,CAAC;AAChD,CAAC;AAED;;GAEG;AACH,MAAM,CAAC,KAAK,UAAU,gBAAgB,CAAC,OAAgC;IACrE,MAAM,EACJ,IAAI,EACJ,OAAO,GAAG,eAAe,EACzB,OAAO,GAAG,eAAe,EACzB,MAAM,GAAG,KAAK,EACd,kBAAkB,GAAG,KAAK,GAC3B,GAAG,OAAO,CAAC;IAEZ,MAAM,cAAc,GAAG,MAAM,EAAE,CAAC,OAAO,EAAE;QACvC,GAAG,EAAE,IAAI;QACT,MAAM,EAAE,OAAO;QACf,QAAQ,EAAE,IAAI;QACd,GAAG,EAAE,IAAI;KACV,CAAC,CAAC;IACH,MAAM,KAAK,GAAG,cAAc,CAAC,MAAM,CAAC,QAAQ,CAAC,EAAE,CAC7C,kBAAkB,IAAI,CAAC,iBAAiB,CAAC,QAAQ,CAAC,IAAI,EAAE,QAAQ,CAAC,CAAC,CACnE,CAAC;IAEF,MAAM,aAAa,GAAa,EAAE,CAAC;IACnC,MAAM,OAAO,GAAG,IAAI,GAAG,EAAkB,CAAC;IAC1C,IAAI,YAAY,GAAG,CAAC,CAAC;IAErB,KAAK,MAAM,QAAQ,IAAI,KAAK,EAAE,CAAC;QAC7B,MAAM,OAAO,GAAG,MAAM,QAAQ,CAAC,QAAQ,EAAE,OAAO,CAAC,CAAC;QAClD,MAAM,EAAE,OAAO,EAAE,OAAO,EAAE,GAAG,4BAA4B,CAAC,OAAO,EAAE,0BAA0B,CAAC,QAAQ,CAAC,CAAC,CAAC;QAEzG,IAAI,OAAO,GAAG,CAAC,EAAE,CAAC;YAChB,MAAM,OAAO,GAAG,QAAQ,CAAC,IAAI,EAAE,QAAQ,CAAC,CAAC;YACzC,aAAa,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC;YAC5B,OAAO,CAAC,GAAG,CAAC,OAAO,EAAE,OAAO,CAAC,CAAC;YAC9B,YAAY,IAAI,OAAO,CAAC;YAExB,IAAI,CAAC,MAAM,EAAE,CAAC;gBACZ,MAAM,SAAS,CAAC,QAAQ,EAAE,OAAO,CAAC,CAAC;YACrC,CAAC;QACH,CAAC;IACH,CAAC;IAED,OAAO,EAAE,aAAa,EAAE,YAAY,EAAE,OAAO,EAAE,CAAC;AAClD,CAAC;AAED,SAAS,iBAAiB,CAAC,OAAe;IACxC,MAAM,UAAU,GAAG,OAAO,CAAC,UAAU,CAAC,IAAI,EAAE,GAAG,CAAC,CAAC;IACjD,OAAO,UAAU,CAAC,UAAU,CAAC,yBAAyB,CAAC,CAAC;AAC1D,CAAC"}

package/dist/parser/comment-strip.d.ts

@@ -7,6 +7,11 @@
  * or null if the line is not a comment.
  */
 export declare function stripCommentPrefix(line: string): string | null;
+/**
+ * Standalone GAL files store raw annotation lines without host-language
+ * comment prefixes, unlike annotations embedded in source files.
+ */
+export declare function isStandaloneAnnotationFile(filePath: string): boolean;
 /**
  * Detect file's primary comment style from extension.
  * Used for multi-line continuation detection.

package/dist/parser/comment-strip.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"comment-strip.d.ts","sourceRoot":"","sources":["../../src/parser/comment-strip.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH;;;GAGG;AACH,wBAAgB,kBAAkB,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,GAAG,IAAI,CA+C9D;AAED;;;GAGG;AACH,wBAAgB,kBAAkB,CAAC,GAAG,EAAE,MAAM,GAAG,MAAM,CAkBtD"}
+{"version":3,"file":"comment-strip.d.ts","sourceRoot":"","sources":["../../src/parser/comment-strip.ts"],"names":[],"mappings":"AAEA;;;GAGG;AAEH;;;GAGG;AACH,wBAAgB,kBAAkB,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,GAAG,IAAI,CA+C9D;AAED;;;GAGG;AACH,wBAAgB,0BAA0B,CAAC,QAAQ,EAAE,MAAM,GAAG,OAAO,CAEpE;AAED;;;GAGG;AACH,wBAAgB,kBAAkB,CAAC,GAAG,EAAE,MAAM,GAAG,MAAM,CAkBtD"}

package/dist/parser/comment-strip.js

@@ -1,3 +1,4 @@
+import { extname } from 'node:path';
 /**
  * Comment prefix stripping per §2.9.
  * Strips the host language's comment prefix to expose the annotation text.
@@ -50,6 +51,13 @@ export function stripCommentPrefix(line) {
         return ocamlBlock[1];
     return null;
 }
+/**
+ * Standalone GAL files store raw annotation lines without host-language
+ * comment prefixes, unlike annotations embedded in source files.
+ */
+export function isStandaloneAnnotationFile(filePath) {
+    return extname(filePath).toLowerCase() === '.gal';
+}
 /**
  * Detect file's primary comment style from extension.
  * Used for multi-line continuation detection.

package/dist/parser/comment-strip.js.map

@@ -1 +1 @@
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+{"version":3,"file":"comment-strip.js","sourceRoot":"","sources":["../../src/parser/comment-strip.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAEpC;;;GAGG;AAEH;;;GAGG;AACH,MAAM,UAAU,kBAAkB,CAAC,IAAY;IAC7C,MAAM,OAAO,GAAG,IAAI,CAAC,SAAS,EAAE,CAAC;IAEjC,6DAA6D;IAC7D,MAAM,cAAc,GAAG;QACrB,IAAI,EAAI,6BAA6B;QACrC,GAAG,EAAK,sCAAsC;QAC9C,IAAI,EAAI,yBAAyB;QACjC,GAAG,EAAK,wBAAwB;QAChC,GAAG,EAAK,0BAA0B;QAClC,MAAM,EAAE,8BAA8B;QACtC,OAAO;QACP,GAAG,EAAK,cAAc;KACvB,CAAC;IAEF,KAAK,MAAM,MAAM,IAAI,cAAc,EAAE,CAAC;QACpC,IAAI,OAAO,CAAC,UAAU,CAAC,MAAM,CAAC,EAAE,CAAC;YAC/B,OAAO,OAAO,CAAC,KAAK,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC,SAAS,EAAE,CAAC;QAClD,CAAC;IACH,CAAC;IAED,8CAA8C;IAC9C,wDAAwD;IACxD,IAAI,OAAO,CAAC,UAAU,CAAC,GAAG,CAAC,IAAI,CAAC,OAAO,CAAC,UAAU,CAAC,IAAI,CAAC,EAAE,CAAC;QACzD,OAAO,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,SAAS,EAAE,CAAC;IACtC,CAAC;IAED,iCAAiC;IACjC,MAAM,SAAS,GAAG,OAAO,CAAC,KAAK,CAAC,sBAAsB,CAAC,CAAC;IACxD,IAAI,SAAS;QAAE,OAAO,SAAS,CAAC,CAAC,CAAC,CAAC;IAEnC,4DAA4D;IAC5D,MAAM,cAAc,GAAG,OAAO,CAAC,KAAK,CAAC,uBAAuB,CAAC,CAAC;IAC9D,IAAI,cAAc;QAAE,OAAO,cAAc,CAAC,CAAC,CAAC,CAAC;IAE7C,MAAM,SAAS,GAAG,OAAO,CAAC,KAAK,CAAC,eAAe,CAAC,CAAC;IACjD,IAAI,SAAS;QAAE,OAAO,SAAS,CAAC,CAAC,CAAC,CAAC,SAAS,EAAE,CAAC;IAE/C,2BAA2B;IAC3B,MAAM,YAAY,GAAG,OAAO,CAAC,KAAK,CAAC,qBAAqB,CAAC,CAAC;IAC1D,IAAI,YAAY;QAAE,OAAO,YAAY,CAAC,CAAC,CAAC,CAAC;IAEzC,0BAA0B;IAC1B,MAAM,UAAU,GAAG,OAAO,CAAC,KAAK,CAAC,uBAAuB,CAAC,CAAC;IAC1D,IAAI,UAAU;QAAE,OAAO,UAAU,CAAC,CAAC,CAAC,CAAC;IAErC,OAAO,IAAI,CAAC;AACd,CAAC;AAED;;;GAGG;AACH,MAAM,UAAU,0BAA0B,CAAC,QAAgB;IACzD,OAAO,OAAO,CAAC,QAAQ,CAAC,CAAC,WAAW,EAAE,KAAK,MAAM,CAAC;AACpD,CAAC;AAED;;;GAGG;AACH,MAAM,UAAU,kBAAkB,CAAC,GAAW;IAC5C,MAAM,GAAG,GAA2B;QAClC,KAAK,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,KAAK,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI;QACpD,OAAO,EAAE,IAAI,EAAE,IAAI,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,KAAK,EAAE,IAAI;QACpD,KAAK,EAAE,IAAI,EAAE,KAAK,EAAE,IAAI,EAAE,KAAK,EAAE,IAAI,EAAE,QAAQ,EAAE,IAAI;QACrD,KAAK,EAAE,IAAI,EAAE,QAAQ,EAAE,IAAI,EAAE,OAAO,EAAE,IAAI;QAC1C,KAAK,EAAE,GAAG,EAAE,KAAK,EAAE,GAAG,EAAE,KAAK,EAAE,GAAG,EAAE,OAAO,EAAE,GAAG;QAChD,MAAM,EAAE,GAAG,EAAE,OAAO,EAAE,GAAG,EAAE,KAAK,EAAE,GAAG,EAAE,IAAI,EAAE,GAAG;QAChD,KAAK,EAAE,GAAG,EAAE,MAAM,EAAE,GAAG,EAAE,MAAM,EAAE,GAAG,EAAE,KAAK,EAAE,GAAG;QAChD,KAAK,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI;QACrD,OAAO,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM;QAC/C,MAAM,EAAE,IAAI;QACZ,MAAM,EAAE,GAAG,EAAE,MAAM,EAAE,GAAG,EAAE,IAAI,EAAE,GAAG;QACnC,OAAO,EAAE,GAAG,EAAE,KAAK,EAAE,GAAG,EAAE,MAAM,EAAE,GAAG,EAAE,MAAM,EAAE,GAAG;QAClD,MAAM,EAAE,KAAK,EAAE,MAAM,EAAE,KAAK;QAC5B,KAAK,EAAE,GAAG,EAAE,MAAM,EAAE,GAAG;KACxB,CAAC;IACF,OAAO,GAAG,CAAC,GAAG,CAAC,WAAW,EAAE,CAAC,IAAI,IAAI,CAAC;AACxC,CAAC"}

package/dist/parser/parse-file.d.ts

@@ -1,6 +1,7 @@
 /**
  * GuardLink — File-level parser.
  * Reads source files and extracts all GuardLink annotations.
+ * Standalone .gal files are treated as raw annotation text.
  *
  * @exposes #parser to #path-traversal [high] cwe:CWE-22 -- "File path from caller read via readFile; no validation here"
  * @exposes #parser to #dos [medium] cwe:CWE-400 -- "Large files loaded entirely into memory"

package/dist/parser/parse-file.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"parse-file.d.ts","sourceRoot":"","sources":["../../src/parser/parse-file.ts"],"names":[],"mappings":"AAAA;;;;;;;;;GASG;AAIH,OAAO,KAAK,EAA+B,WAAW,EAAE,MAAM,mBAAmB,CAAC;AAKlF;;GAEG;AACH,wBAAsB,SAAS,CAAC,QAAQ,EAAE,MAAM,GAAG,OAAO,CAAC,WAAW,CAAC,CAGtE;AAED;;;GAGG;AACH,wBAAgB,WAAW,CAAC,OAAO,EAAE,MAAM,EAAE,QAAQ,GAAE,MAAkB,GAAG,WAAW,CAuEtF"}
+{"version":3,"file":"parse-file.d.ts","sourceRoot":"","sources":["../../src/parser/parse-file.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;GAUG;AAGH,OAAO,KAAK,EAA+B,WAAW,EAAkB,MAAM,mBAAmB,CAAC;AAKlG;;GAEG;AACH,wBAAsB,SAAS,CAAC,QAAQ,EAAE,MAAM,GAAG,OAAO,CAAC,WAAW,CAAC,CAGtE;AAED;;;GAGG;AACH,wBAAgB,WAAW,CAAC,OAAO,EAAE,MAAM,EAAE,QAAQ,GAAE,MAAkB,GAAG,WAAW,CA8FtF"}

package/dist/parser/parse-file.js

@@ -1,6 +1,7 @@
 /**
  * GuardLink — File-level parser.
  * Reads source files and extracts all GuardLink annotations.
+ * Standalone .gal files are treated as raw annotation text.
  *
  * @exposes #parser to #path-traversal [high] cwe:CWE-22 -- "File path from caller read via readFile; no validation here"
  * @exposes #parser to #dos [medium] cwe:CWE-400 -- "Large files loaded entirely into memory"
@@ -9,7 +10,7 @@
  * @flows #parser -> Annotations via parseString -- "Parsed annotation output"
  */
 import { readFile } from 'node:fs/promises';
-import { stripCommentPrefix } from './comment-strip.js';
+import { isStandaloneAnnotationFile, stripCommentPrefix } from './comment-strip.js';
 import { parseLine } from './parse-line.js';
 import { unescapeDescription } from './normalize.js';
 /**
@@ -29,20 +30,24 @@ export function parseString(content, filePath = '<input>') {
     const diagnostics = [];
     let lastAnnotation = null;
     let inShield = false;
+    const allowRawAnnotationLines = isStandaloneAnnotationFile(filePath);
+    let currentSource = null;
     for (let i = 0; i < lines.length; i++) {
         const lineNum = i + 1; // 1-indexed
         const rawLine = lines[i];
-        // Strip comment prefix
-        const inner = stripCommentPrefix(rawLine);
+        // Strip comment prefix unless this is a standalone .gal file, where
+        // annotations are stored as raw lines instead of host-language comments.
+        const inner = allowRawAnnotationLines ? rawLine : stripCommentPrefix(rawLine);
         if (inner === null) {
             lastAnnotation = null;
             continue;
         }
+        const text = inner.trimStart();
         // Check for shield block boundaries — always parse these even inside shields
-        const trimmed = inner.trim();
+        const trimmed = text.trim();
         if (trimmed.startsWith('@shield:end')) {
             const location = { file: filePath, line: lineNum };
-            const result = parseLine(inner, location);
+            const result = parseLine(text, location);
             if (result.annotation)
                 annotations.push(result.annotation);
             inShield = false;
@@ -51,7 +56,7 @@ export function parseString(content, filePath = '<input>') {
         }
         if (trimmed.startsWith('@shield:begin')) {
             const location = { file: filePath, line: lineNum };
-            const result = parseLine(inner, location);
+            const result = parseLine(text, location);
             if (result.annotation)
                 annotations.push(result.annotation);
             inShield = true;
@@ -62,7 +67,7 @@ export function parseString(content, filePath = '<input>') {
         if (inShield)
             continue;
         // Check for continuation line: -- "..."
-        const contMatch = inner.match(/^--\s*"((?:[^"\\]|\\.)*)"/);
+        const contMatch = text.match(/^--\s*"((?:[^"\\]|\\.)*)"/);
         if (contMatch && lastAnnotation) {
             // Append to last annotation's description
             const contDesc = unescapeDescription(contMatch[1]);
@@ -76,8 +81,26 @@ export function parseString(content, filePath = '<input>') {
         }
         // Try to parse as annotation
         const location = { file: filePath, line: lineNum };
-        const result = parseLine(inner, location);
+        const result = parseLine(text, location);
+        if (result.sourceDirective) {
+            currentSource = {
+                file: result.sourceDirective.file,
+                line: result.sourceDirective.line,
+                parent_symbol: result.sourceDirective.symbol ?? null,
+            };
+            lastAnnotation = null;
+            continue;
+        }
         if (result.annotation) {
+            if (allowRawAnnotationLines && currentSource) {
+                result.annotation.location = {
+                    file: currentSource.file,
+                    line: currentSource.line,
+                    parent_symbol: currentSource.parent_symbol ?? null,
+                    origin_file: filePath,
+                    origin_line: lineNum,
+                };
+            }
             annotations.push(result.annotation);
             lastAnnotation = result.annotation;
         }

package/dist/parser/parse-file.js.map

@@ -1 +1 @@
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package/dist/parser/parse-line.d.ts

@@ -7,10 +7,16 @@
  * @comment -- "Regex patterns designed with bounded quantifiers and explicit structure"
  */
 import type { Annotation, ParseDiagnostic, SourceLocation } from '../types/index.js';
+export interface SourceDirective {
+    file: string;
+    line: number;
+    symbol?: string;
+}
 export interface ParseLineResult {
     annotation: Annotation | null;
     diagnostic: ParseDiagnostic | null;
     isContinuation: boolean;
+    sourceDirective?: SourceDirective | null;
 }
 /**
  * Parse a single annotation line (after comment prefix has been stripped).

package/dist/parser/parse-line.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"parse-line.d.ts","sourceRoot":"","sources":["../../src/parser/parse-line.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,KAAK,EACV,UAAU,EACV,eAAe,EAAE,cAAc,EAChC,MAAM,mBAAmB,CAAC;AAsE3B,MAAM,WAAW,eAAe;IAC9B,UAAU,EAAE,UAAU,GAAG,IAAI,CAAC;IAC9B,UAAU,EAAE,eAAe,GAAG,IAAI,CAAC;IACnC,cAAc,EAAE,OAAO,CAAC;CACzB;AAED;;;;GAIG;AACH,wBAAgB,SAAS,CACvB,IAAI,EAAE,MAAM,EACZ,QAAQ,EAAE,cAAc,GACvB,eAAe,CA8KjB"}
+{"version":3,"file":"parse-line.d.ts","sourceRoot":"","sources":["../../src/parser/parse-line.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,KAAK,EACV,UAAU,EACV,eAAe,EAAE,cAAc,EAChC,MAAM,mBAAmB,CAAC;AA4E3B,MAAM,WAAW,eAAe;IAC9B,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,EAAE,MAAM,CAAC;IACb,MAAM,CAAC,EAAE,MAAM,CAAC;CACjB;AAED,MAAM,WAAW,eAAe;IAC9B,UAAU,EAAE,UAAU,GAAG,IAAI,CAAC;IAC9B,UAAU,EAAE,eAAe,GAAG,IAAI,CAAC;IACnC,cAAc,EAAE,OAAO,CAAC;IACxB,eAAe,CAAC,EAAE,eAAe,GAAG,IAAI,CAAC;CAC1C;AAED;;;;GAIG;AACH,wBAAgB,SAAS,CACvB,IAAI,EAAE,MAAM,EACZ,QAAQ,EAAE,cAAc,GACvB,eAAe,CA4LjB"}

package/dist/parser/parse-line.js

@@ -17,6 +17,9 @@ const THREAT_REF = String.raw `(?:#[a-zA-Z0-9_-]+|[A-Za-z]\w*(?:[_\- ][A-Za-z]\w
 const SEVERITY = String.raw `\[(P[0-3]|critical|high|medium|low)\]`;
 const EXT_REF = String.raw `([a-zA-Z]+:[A-Za-z0-9_:.\-]+)`;
 const DESC = String.raw `--\s*"((?:[^"\\]|\\.)*)"`;
+const SOURCE_FILE = String.raw `\S+`;
+const SOURCE_LINE = String.raw `[1-9]\d*`;
+const SOURCE_SYMBOL = String.raw `\S+`;
 // Capture external refs (0 or more, space-separated)
 const EXT_REFS_OPT = String.raw `((?:\s+[a-zA-Z]+:[A-Za-z0-9_:.\-]+)*)`;
 // ─── Verb-specific patterns ──────────────────────────────────────────
@@ -45,6 +48,8 @@ const PATTERNS = {
     assumes: new RegExp(String.raw `^@assumes\s+(${ASSET_REF})(?:\s+${DESC})?$`),
     // Comment — developer note, description only
     comment: new RegExp(String.raw `^@comment(?:\s+${DESC})?$`),
+    // Standalone .gal directive — sets logical source location for following annotations
+    source: new RegExp(String.raw `^@source\s+file:(${SOURCE_FILE})\s+line:(${SOURCE_LINE})(?:\s+symbol:(${SOURCE_SYMBOL}))?$`),
     // Special
     shield: new RegExp(String.raw `^@shield(?!:)(?:\s+${DESC})?$`),
     shield_begin: new RegExp(String.raw `^@shield:begin(?:\s+${DESC})?$`),
@@ -72,9 +77,9 @@ export function parseLine(text, location) {
         // Check for continuation line (-- "...")
         const contMatch = trimmed.match(new RegExp(String.raw `^${DESC}$`));
         if (contMatch) {
-            return { annotation: null, diagnostic: null, isContinuation: true };
+            return { annotation: null, diagnostic: null, isContinuation: true, sourceDirective: null };
         }
-        return { annotation: null, diagnostic: null, isContinuation: false };
+        return { annotation: null, diagnostic: null, isContinuation: false, sourceDirective: null };
     }
     const base = { location, raw: trimmed };
     let m;
@@ -181,6 +186,19 @@ export function parseLine(text, location) {
     if ((m = trimmed.match(PATTERNS.comment))) {
         return ok({ ...base, verb: 'comment', description: desc(m[1]) });
     }
+    // ── @source ──
+    if ((m = trimmed.match(PATTERNS.source))) {
+        return {
+            annotation: null,
+            diagnostic: null,
+            isContinuation: false,
+            sourceDirective: {
+                file: m[1],
+                line: Number(m[2]),
+                symbol: m[3] || undefined,
+            },
+        };
+    }
     // ── @shield ──
     if ((m = trimmed.match(PATTERNS.shield_begin))) {
         return ok({ ...base, verb: 'shield:begin', description: desc(m[1]) });
@@ -197,7 +215,7 @@ export function parseLine(text, location) {
         const knownVerbs = new Set([
             'asset', 'threat', 'control', 'mitigates', 'exposes', 'accepts',
             'transfers', 'flows', 'boundary', 'validates', 'audit', 'owns',
-            'handles', 'assumes', 'comment', 'shield', 'shield:begin', 'shield:end',
+            'handles', 'assumes', 'comment', 'source', 'shield', 'shield:begin', 'shield:end',
             // v1 compat
             'review', 'connects',
         ]);
@@ -216,11 +234,11 @@ export function parseLine(text, location) {
         }
     }
     // Not a GuardLink annotation (could be @param, @returns, etc.)
-    return { annotation: null, diagnostic: null, isContinuation: false };
+    return { annotation: null, diagnostic: null, isContinuation: false, sourceDirective: null };
 }
 // ─── Helpers ─────────────────────────────────────────────────────────
 function ok(annotation) {
-    return { annotation, diagnostic: null, isContinuation: false };
+    return { annotation, diagnostic: null, isContinuation: false, sourceDirective: null };
 }
 function desc(raw) {
     if (!raw)