guardlink 1.4.0 → 1.4.2

package/dist/parser/clear.js

@@ -1,6 +1,7 @@
 /**
  * GuardLink — Annotation clearing utility.
- * Scans project source files and removes all GuardLink annotation comment lines.
+ * Scans project source files and removes all GuardLink annotation lines.
+ * Standalone .gal files are treated as raw annotation text.
  *
  * Used by `guardlink clear` and `/clear` to let users start fresh with annotations.
  *
@@ -15,13 +16,13 @@
 import fg from 'fast-glob';
 import { readFile, writeFile } from 'node:fs/promises';
 import { relative } from 'node:path';
-import { stripCommentPrefix } from './comment-strip.js';
+import { isStandaloneAnnotationFile, stripCommentPrefix } from './comment-strip.js';
 // ─── Known GuardLink verbs ──────────────────────────────────────────
 const GUARDLINK_VERBS = new Set([
     'asset', 'threat', 'control',
     'mitigates', 'exposes', 'accepts', 'transfers', 'flows', 'boundary',
     'validates', 'audit', 'owns', 'handles', 'assumes',
-    'comment', 'shield', 'shield:begin', 'shield:end',
+    'comment', 'source', 'shield', 'shield:begin', 'shield:end',
     // v1 compat
     'review', 'connects',
 ]);
@@ -38,6 +39,7 @@ const DEFAULT_INCLUDE = [
     '**/*.html', '**/*.xml', '**/*.svg',
     '**/*.css',
     '**/*.ex', '**/*.exs',
+    '**/*.[gG][aA][lL]',
 ];
 const DEFAULT_EXCLUDE = [
     '**/node_modules/**', '**/dist/**', '**/build/**', '**/.git/**',
@@ -45,11 +47,7 @@ const DEFAULT_EXCLUDE = [
     '**/tests/**', '**/test/**', '**/__tests__/**',
 ];
 // ─── Core logic ─────────────────────────────────────────────────────
-/**
- * Check if a source line contains a GuardLink annotation.
- */
-function isGuardLinkAnnotationLine(line) {
-    const inner = stripCommentPrefix(line);
+function isGuardLinkAnnotationText(inner) {
     if (inner === null)
         return false;
     const trimmed = inner.trim();
@@ -62,16 +60,6 @@ function isGuardLinkAnnotationLine(line) {
     const verb = verbMatch[1];
     return GUARDLINK_VERBS.has(verb);
 }
-/**
- * Check if a line is a continuation description line (-- "...") that follows
- * a GuardLink annotation.
- */
-function isContinuationLine(line) {
-    const inner = stripCommentPrefix(line);
-    if (inner === null)
-        return false;
-    return /^--\s*"/.test(inner.trim());
-}
 /**
  * Remove all GuardLink annotation lines from a file's content.
  * Returns the cleaned content and count of lines removed.
@@ -80,20 +68,21 @@ function isContinuationLine(line) {
  * - Continuation lines (-- "...") that follow an annotation
  * - Empty comment lines that are left between annotations (cleanup)
  */
-function removeAnnotationsFromContent(content) {
+function removeAnnotationsFromContent(content, allowRawAnnotationLines) {
     const lines = content.split('\n');
     const result = [];
     let removed = 0;
     let lastWasAnnotation = false;
     for (let i = 0; i < lines.length; i++) {
         const line = lines[i];
-        if (isGuardLinkAnnotationLine(line)) {
+        const inner = allowRawAnnotationLines ? line : stripCommentPrefix(line);
+        if (isGuardLinkAnnotationText(inner)) {
             removed++;
             lastWasAnnotation = true;
             continue;
         }
         // Remove continuation lines that follow an annotation
-        if (lastWasAnnotation && isContinuationLine(line)) {
+        if (lastWasAnnotation && inner !== null && /^--\s*"/.test(inner.trim())) {
             removed++;
             continue;
         }
@@ -117,22 +106,19 @@ function removeAnnotationsFromContent(content) {
  */
 export async function clearAnnotations(options) {
     const { root, include = DEFAULT_INCLUDE, exclude = DEFAULT_EXCLUDE, dryRun = false, includeDefinitions = false, } = options;
-    // Build exclude list — skip .guardlink/ definitions unless explicitly included
-    const effectiveExclude = includeDefinitions
-        ? exclude
-        : [...exclude, '**/.guardlink/**'];
-    const files = await fg(include, {
+    const candidateFiles = await fg(include, {
         cwd: root,
-        ignore: effectiveExclude,
+        ignore: exclude,
         absolute: true,
         dot: true,
     });
+    const files = candidateFiles.filter(filePath => includeDefinitions || !isDefinitionsFile(relative(root, filePath)));
     const modifiedFiles = [];
     const perFile = new Map();
     let totalRemoved = 0;
     for (const filePath of files) {
         const content = await readFile(filePath, 'utf-8');
-        const { cleaned, removed } = removeAnnotationsFromContent(content);
+        const { cleaned, removed } = removeAnnotationsFromContent(content, isStandaloneAnnotationFile(filePath));
         if (removed > 0) {
             const relPath = relative(root, filePath);
             modifiedFiles.push(relPath);
@@ -145,4 +131,8 @@ export async function clearAnnotations(options) {
     }
     return { modifiedFiles, totalRemoved, perFile };
 }
+function isDefinitionsFile(relPath) {
+    const normalized = relPath.replaceAll('\\', '/');
+    return normalized.startsWith('.guardlink/definitions.');
+}
 //# sourceMappingURL=clear.js.map

package/dist/parser/clear.js.map

@@ -1 +1 @@
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+{"version":3,"file":"clear.js","sourceRoot":"","sources":["../../src/parser/clear.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;GAcG;AAEH,OAAO,EAAE,MAAM,WAAW,CAAC;AAC3B,OAAO,EAAE,QAAQ,EAAE,SAAS,EAAE,MAAM,kBAAkB,CAAC;AACvD,OAAO,EAAE,QAAQ,EAAE,MAAM,WAAW,CAAC;AACrC,OAAO,EAAE,0BAA0B,EAAE,kBAAkB,EAAE,MAAM,oBAAoB,CAAC;AAEpF,uEAAuE;AAEvE,MAAM,eAAe,GAAG,IAAI,GAAG,CAAC;IAC9B,OAAO,EAAE,QAAQ,EAAE,SAAS;IAC5B,WAAW,EAAE,SAAS,EAAE,SAAS,EAAE,WAAW,EAAE,OAAO,EAAE,UAAU;IACnE,WAAW,EAAE,OAAO,EAAE,MAAM,EAAE,SAAS,EAAE,SAAS;IAClD,SAAS,EAAE,QAAQ,EAAE,QAAQ,EAAE,cAAc,EAAE,YAAY;IAC3D,YAAY;IACZ,QAAQ,EAAE,UAAU;CACrB,CAAC,CAAC;AAEH,MAAM,eAAe,GAAG;IACtB,SAAS,EAAE,UAAU,EAAE,SAAS,EAAE,UAAU;IAC5C,SAAS,EAAE,SAAS,EAAE,SAAS,EAAE,SAAS;IAC1C,WAAW,EAAE,SAAS,EAAE,YAAY;IACpC,QAAQ,EAAE,UAAU,EAAE,SAAS,EAAE,QAAQ,EAAE,UAAU;IACrD,SAAS,EAAE,YAAY,EAAE,WAAW;IACpC,UAAU,EAAE,UAAU,EAAE,SAAS;IACjC,SAAS,EAAE,UAAU;IACrB,WAAW,EAAE,UAAU;IACvB,SAAS,EAAE,WAAW;IACtB,WAAW,EAAE,UAAU,EAAE,UAAU;IACnC,UAAU;IACV,SAAS,EAAE,UAAU;IACrB,mBAAmB;CACpB,CAAC;AAEF,MAAM,eAAe,GAAG;IACtB,oBAAoB,EAAE,YAAY,EAAE,aAAa,EAAE,YAAY;IAC/D,mBAAmB,EAAE,cAAc,EAAE,cAAc,EAAE,aAAa;IAClE,aAAa,EAAE,YAAY,EAAE,iBAAiB;CAC/C,CAAC;AAuBF,uEAAuE;AAEvE,SAAS,yBAAyB,CAAC,KAAoB;IACrD,IAAI,KAAK,KAAK,IAAI;QAAE,OAAO,KAAK,CAAC;IAEjC,MAAM,OAAO,GAAG,KAAK,CAAC,IAAI,EAAE,CAAC;IAC7B,IAAI,CAAC,OAAO,CAAC,UAAU,CAAC,GAAG,CAAC;QAAE,OAAO,KAAK,CAAC;IAE3C,mBAAmB;IACnB,MAAM,SAAS,GAAG,OAAO,CAAC,KAAK,CAAC,SAAS,CAAC,CAAC;IAC3C,IAAI,CAAC,SAAS;QAAE,OAAO,KAAK,CAAC;IAE7B,MAAM,IAAI,GAAG,SAAS,CAAC,CAAC,CAAC,CAAC;IAC1B,OAAO,eAAe,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC;AACnC,CAAC;AAED;;;;;;;GAOG;AACH,SAAS,4BAA4B,CAAC,OAAe,EAAE,uBAAgC;IACrF,MAAM,KAAK,GAAG,OAAO,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC;IAClC,MAAM,MAAM,GAAa,EAAE,CAAC;IAC5B,IAAI,OAAO,GAAG,CAAC,CAAC;IAChB,IAAI,iBAAiB,GAAG,KAAK,CAAC;IAE9B,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,KAAK,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;QACtC,MAAM,IAAI,GAAG,KAAK,CAAC,CAAC,CAAC,CAAC;QACtB,MAAM,KAAK,GAAG,uBAAuB,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,kBAAkB,CAAC,IAAI,CAAC,CAAC;QAExE,IAAI,yBAAyB,CAAC,KAAK,CAAC,EAAE,CAAC;YACrC,OAAO,EAAE,CAAC;YACV,iBAAiB,GAAG,IAAI,CAAC;YACzB,SAAS;QACX,CAAC;QAED,sDAAsD;QACtD,IAAI,iBAAiB,IAAI,KAAK,KAAK,IAAI,IAAI,SAAS,CAAC,IAAI,CAAC,KAAK,CAAC,IAAI,EAAE,CAAC,EAAE,CAAC;YACxE,OAAO,EAAE,CAAC;YACV,SAAS;QACX,CAAC;QAED,iBAAiB,GAAG,KAAK,CAAC;QAC1B,MAAM,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;IACpB,CAAC;IAED,2EAA2E;IAC3E,MAAM,KAAK,GAAa,EAAE,CAAC;IAC3B,IAAI,SAAS,GAAG,KAAK,CAAC;IACtB,KAAK,MAAM,IAAI,IAAI,MAAM,EAAE,CAAC;QAC1B,MAAM,OAAO,GAAG,IAAI,CAAC,IAAI,EAAE,KAAK,EAAE,CAAC;QACnC,IAAI,OAAO,IAAI,SAAS;YAAE,SAAS,CAAC,2BAA2B;QAC/D,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;QACjB,SAAS,GAAG,OAAO,CAAC;IACtB,CAAC;IAED,OAAO,EAAE,OAAO,EAAE,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,OAAO,EAAE,CAAC;AAChD,CAAC;AAED;;GAEG;AACH,MAAM,CAAC,KAAK,UAAU,gBAAgB,CAAC,OAAgC;IACrE,MAAM,EACJ,IAAI,EACJ,OAAO,GAAG,eAAe,EACzB,OAAO,GAAG,eAAe,EACzB,MAAM,GAAG,KAAK,EACd,kBAAkB,GAAG,KAAK,GAC3B,GAAG,OAAO,CAAC;IAEZ,MAAM,cAAc,GAAG,MAAM,EAAE,CAAC,OAAO,EAAE;QACvC,GAAG,EAAE,IAAI;QACT,MAAM,EAAE,OAAO;QACf,QAAQ,EAAE,IAAI;QACd,GAAG,EAAE,IAAI;KACV,CAAC,CAAC;IACH,MAAM,KAAK,GAAG,cAAc,CAAC,MAAM,CAAC,QAAQ,CAAC,EAAE,CAC7C,kBAAkB,IAAI,CAAC,iBAAiB,CAAC,QAAQ,CAAC,IAAI,EAAE,QAAQ,CAAC,CAAC,CACnE,CAAC;IAEF,MAAM,aAAa,GAAa,EAAE,CAAC;IACnC,MAAM,OAAO,GAAG,IAAI,GAAG,EAAkB,CAAC;IAC1C,IAAI,YAAY,GAAG,CAAC,CAAC;IAErB,KAAK,MAAM,QAAQ,IAAI,KAAK,EAAE,CAAC;QAC7B,MAAM,OAAO,GAAG,MAAM,QAAQ,CAAC,QAAQ,EAAE,OAAO,CAAC,CAAC;QAClD,MAAM,EAAE,OAAO,EAAE,OAAO,EAAE,GAAG,4BAA4B,CAAC,OAAO,EAAE,0BAA0B,CAAC,QAAQ,CAAC,CAAC,CAAC;QAEzG,IAAI,OAAO,GAAG,CAAC,EAAE,CAAC;YAChB,MAAM,OAAO,GAAG,QAAQ,CAAC,IAAI,EAAE,QAAQ,CAAC,CAAC;YACzC,aAAa,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC;YAC5B,OAAO,CAAC,GAAG,CAAC,OAAO,EAAE,OAAO,CAAC,CAAC;YAC9B,YAAY,IAAI,OAAO,CAAC;YAExB,IAAI,CAAC,MAAM,EAAE,CAAC;gBACZ,MAAM,SAAS,CAAC,QAAQ,EAAE,OAAO,CAAC,CAAC;YACrC,CAAC;QACH,CAAC;IACH,CAAC;IAED,OAAO,EAAE,aAAa,EAAE,YAAY,EAAE,OAAO,EAAE,CAAC;AAClD,CAAC;AAED,SAAS,iBAAiB,CAAC,OAAe;IACxC,MAAM,UAAU,GAAG,OAAO,CAAC,UAAU,CAAC,IAAI,EAAE,GAAG,CAAC,CAAC;IACjD,OAAO,UAAU,CAAC,UAAU,CAAC,yBAAyB,CAAC,CAAC;AAC1D,CAAC"}

package/dist/parser/comment-strip.d.ts

@@ -7,6 +7,11 @@
  * or null if the line is not a comment.
  */
 export declare function stripCommentPrefix(line: string): string | null;
+/**
+ * Standalone GAL files store raw annotation lines without host-language
+ * comment prefixes, unlike annotations embedded in source files.
+ */
+export declare function isStandaloneAnnotationFile(filePath: string): boolean;
 /**
  * Detect file's primary comment style from extension.
  * Used for multi-line continuation detection.

package/dist/parser/comment-strip.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"comment-strip.d.ts","sourceRoot":"","sources":["../../src/parser/comment-strip.ts"],"names":[],"mappings":"AAEA;;;GAGG;AAEH;;;GAGG;AACH,wBAAgB,kBAAkB,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,GAAG,IAAI,CA+C9D;AAED;;;GAGG;AACH,wBAAgB,0BAA0B,CAAC,QAAQ,EAAE,MAAM,GAAG,OAAO,CAEpE;AAED;;;GAGG;AACH,wBAAgB,kBAAkB,CAAC,GAAG,EAAE,MAAM,GAAG,MAAM,CAkBtD"}

package/dist/parser/comment-strip.js

@@ -1,3 +1,4 @@
+import { extname } from 'node:path';
 /**
  * Comment prefix stripping per §2.9.
  * Strips the host language's comment prefix to expose the annotation text.
@@ -50,6 +51,13 @@ export function stripCommentPrefix(line) {
         return ocamlBlock[1];
     return null;
 }
+/**
+ * Standalone GAL files store raw annotation lines without host-language
+ * comment prefixes, unlike annotations embedded in source files.
+ */
+export function isStandaloneAnnotationFile(filePath) {
+    return extname(filePath).toLowerCase() === '.gal';
+}
 /**
  * Detect file's primary comment style from extension.
  * Used for multi-line continuation detection.

package/dist/parser/comment-strip.js.map

@@ -1 +1 @@
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+{"version":3,"file":"comment-strip.js","sourceRoot":"","sources":["../../src/parser/comment-strip.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAEpC;;;GAGG;AAEH;;;GAGG;AACH,MAAM,UAAU,kBAAkB,CAAC,IAAY;IAC7C,MAAM,OAAO,GAAG,IAAI,CAAC,SAAS,EAAE,CAAC;IAEjC,6DAA6D;IAC7D,MAAM,cAAc,GAAG;QACrB,IAAI,EAAI,6BAA6B;QACrC,GAAG,EAAK,sCAAsC;QAC9C,IAAI,EAAI,yBAAyB;QACjC,GAAG,EAAK,wBAAwB;QAChC,GAAG,EAAK,0BAA0B;QAClC,MAAM,EAAE,8BAA8B;QACtC,OAAO;QACP,GAAG,EAAK,cAAc;KACvB,CAAC;IAEF,KAAK,MAAM,MAAM,IAAI,cAAc,EAAE,CAAC;QACpC,IAAI,OAAO,CAAC,UAAU,CAAC,MAAM,CAAC,EAAE,CAAC;YAC/B,OAAO,OAAO,CAAC,KAAK,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC,SAAS,EAAE,CAAC;QAClD,CAAC;IACH,CAAC;IAED,8CAA8C;IAC9C,wDAAwD;IACxD,IAAI,OAAO,CAAC,UAAU,CAAC,GAAG,CAAC,IAAI,CAAC,OAAO,CAAC,UAAU,CAAC,IAAI,CAAC,EAAE,CAAC;QACzD,OAAO,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,SAAS,EAAE,CAAC;IACtC,CAAC;IAED,iCAAiC;IACjC,MAAM,SAAS,GAAG,OAAO,CAAC,KAAK,CAAC,sBAAsB,CAAC,CAAC;IACxD,IAAI,SAAS;QAAE,OAAO,SAAS,CAAC,CAAC,CAAC,CAAC;IAEnC,4DAA4D;IAC5D,MAAM,cAAc,GAAG,OAAO,CAAC,KAAK,CAAC,uBAAuB,CAAC,CAAC;IAC9D,IAAI,cAAc;QAAE,OAAO,cAAc,CAAC,CAAC,CAAC,CAAC;IAE7C,MAAM,SAAS,GAAG,OAAO,CAAC,KAAK,CAAC,eAAe,CAAC,CAAC;IACjD,IAAI,SAAS;QAAE,OAAO,SAAS,CAAC,CAAC,CAAC,CAAC,SAAS,EAAE,CAAC;IAE/C,2BAA2B;IAC3B,MAAM,YAAY,GAAG,OAAO,CAAC,KAAK,CAAC,qBAAqB,CAAC,CAAC;IAC1D,IAAI,YAAY;QAAE,OAAO,YAAY,CAAC,CAAC,CAAC,CAAC;IAEzC,0BAA0B;IAC1B,MAAM,UAAU,GAAG,OAAO,CAAC,KAAK,CAAC,uBAAuB,CAAC,CAAC;IAC1D,IAAI,UAAU;QAAE,OAAO,UAAU,CAAC,CAAC,CAAC,CAAC;IAErC,OAAO,IAAI,CAAC;AACd,CAAC;AAED;;;GAGG;AACH,MAAM,UAAU,0BAA0B,CAAC,QAAgB;IACzD,OAAO,OAAO,CAAC,QAAQ,CAAC,CAAC,WAAW,EAAE,KAAK,MAAM,CAAC;AACpD,CAAC;AAED;;;GAGG;AACH,MAAM,UAAU,kBAAkB,CAAC,GAAW;IAC5C,MAAM,GAAG,GAA2B;QAClC,KAAK,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,KAAK,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI;QACpD,OAAO,EAAE,IAAI,EAAE,IAAI,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,KAAK,EAAE,IAAI;QACpD,KAAK,EAAE,IAAI,EAAE,KAAK,EAAE,IAAI,EAAE,KAAK,EAAE,IAAI,EAAE,QAAQ,EAAE,IAAI;QACrD,KAAK,EAAE,IAAI,EAAE,QAAQ,EAAE,IAAI,EAAE,OAAO,EAAE,IAAI;QAC1C,KAAK,EAAE,GAAG,EAAE,KAAK,EAAE,GAAG,EAAE,KAAK,EAAE,GAAG,EAAE,OAAO,EAAE,GAAG;QAChD,MAAM,EAAE,GAAG,EAAE,OAAO,EAAE,GAAG,EAAE,KAAK,EAAE,GAAG,EAAE,IAAI,EAAE,GAAG;QAChD,KAAK,EAAE,GAAG,EAAE,MAAM,EAAE,GAAG,EAAE,MAAM,EAAE,GAAG,EAAE,KAAK,EAAE,GAAG;QAChD,KAAK,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI;QACrD,OAAO,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM;QAC/C,MAAM,EAAE,IAAI;QACZ,MAAM,EAAE,GAAG,EAAE,MAAM,EAAE,GAAG,EAAE,IAAI,EAAE,GAAG;QACnC,OAAO,EAAE,GAAG,EAAE,KAAK,EAAE,GAAG,EAAE,MAAM,EAAE,GAAG,EAAE,MAAM,EAAE,GAAG;QAClD,MAAM,EAAE,KAAK,EAAE,MAAM,EAAE,KAAK;QAC5B,KAAK,EAAE,GAAG,EAAE,MAAM,EAAE,GAAG;KACxB,CAAC;IACF,OAAO,GAAG,CAAC,GAAG,CAAC,WAAW,EAAE,CAAC,IAAI,IAAI,CAAC;AACxC,CAAC"}

package/dist/parser/parse-file.d.ts

@@ -1,6 +1,7 @@
 /**
  * GuardLink — File-level parser.
  * Reads source files and extracts all GuardLink annotations.
+ * Standalone .gal files are treated as raw annotation text.
  *
  * @exposes #parser to #path-traversal [high] cwe:CWE-22 -- "File path from caller read via readFile; no validation here"
  * @exposes #parser to #dos [medium] cwe:CWE-400 -- "Large files loaded entirely into memory"

package/dist/parser/parse-file.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"parse-file.d.ts","sourceRoot":"","sources":["../../src/parser/parse-file.ts"],"names":[],"mappings":"AAAA;;;;;;;;;GASG;AAIH,OAAO,KAAK,EAA+B,WAAW,EAAE,MAAM,mBAAmB,CAAC;AAKlF;;GAEG;AACH,wBAAsB,SAAS,CAAC,QAAQ,EAAE,MAAM,GAAG,OAAO,CAAC,WAAW,CAAC,CAGtE;AAED;;;GAGG;AACH,wBAAgB,WAAW,CAAC,OAAO,EAAE,MAAM,EAAE,QAAQ,GAAE,MAAkB,GAAG,WAAW,CAuEtF"}
+{"version":3,"file":"parse-file.d.ts","sourceRoot":"","sources":["../../src/parser/parse-file.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;GAUG;AAGH,OAAO,KAAK,EAA+B,WAAW,EAAkB,MAAM,mBAAmB,CAAC;AAKlG;;GAEG;AACH,wBAAsB,SAAS,CAAC,QAAQ,EAAE,MAAM,GAAG,OAAO,CAAC,WAAW,CAAC,CAGtE;AAED;;;GAGG;AACH,wBAAgB,WAAW,CAAC,OAAO,EAAE,MAAM,EAAE,QAAQ,GAAE,MAAkB,GAAG,WAAW,CA8FtF"}

package/dist/parser/parse-file.js

@@ -1,6 +1,7 @@
 /**
  * GuardLink — File-level parser.
  * Reads source files and extracts all GuardLink annotations.
+ * Standalone .gal files are treated as raw annotation text.
  *
  * @exposes #parser to #path-traversal [high] cwe:CWE-22 -- "File path from caller read via readFile; no validation here"
  * @exposes #parser to #dos [medium] cwe:CWE-400 -- "Large files loaded entirely into memory"
@@ -9,7 +10,7 @@
  * @flows #parser -> Annotations via parseString -- "Parsed annotation output"
  */
 import { readFile } from 'node:fs/promises';
-import { stripCommentPrefix } from './comment-strip.js';
+import { isStandaloneAnnotationFile, stripCommentPrefix } from './comment-strip.js';
 import { parseLine } from './parse-line.js';
 import { unescapeDescription } from './normalize.js';
 /**
@@ -29,20 +30,24 @@ export function parseString(content, filePath = '<input>') {
     const diagnostics = [];
     let lastAnnotation = null;
     let inShield = false;
+    const allowRawAnnotationLines = isStandaloneAnnotationFile(filePath);
+    let currentSource = null;
     for (let i = 0; i < lines.length; i++) {
         const lineNum = i + 1; // 1-indexed
         const rawLine = lines[i];
-        // Strip comment prefix
-        const inner = stripCommentPrefix(rawLine);
+        // Strip comment prefix unless this is a standalone .gal file, where
+        // annotations are stored as raw lines instead of host-language comments.
+        const inner = allowRawAnnotationLines ? rawLine : stripCommentPrefix(rawLine);
         if (inner === null) {
             lastAnnotation = null;
             continue;
         }
+        const text = inner.trimStart();
         // Check for shield block boundaries — always parse these even inside shields
-        const trimmed = inner.trim();
+        const trimmed = text.trim();
         if (trimmed.startsWith('@shield:end')) {
             const location = { file: filePath, line: lineNum };
-            const result = parseLine(inner, location);
+            const result = parseLine(text, location);
             if (result.annotation)
                 annotations.push(result.annotation);
             inShield = false;
@@ -51,7 +56,7 @@ export function parseString(content, filePath = '<input>') {
         }
         if (trimmed.startsWith('@shield:begin')) {
             const location = { file: filePath, line: lineNum };
-            const result = parseLine(inner, location);
+            const result = parseLine(text, location);
             if (result.annotation)
                 annotations.push(result.annotation);
             inShield = true;
@@ -62,7 +67,7 @@ export function parseString(content, filePath = '<input>') {
         if (inShield)
             continue;
         // Check for continuation line: -- "..."
-        const contMatch = inner.match(/^--\s*"((?:[^"\\]|\\.)*)"/);
+        const contMatch = text.match(/^--\s*"((?:[^"\\]|\\.)*)"/);
         if (contMatch && lastAnnotation) {
             // Append to last annotation's description
             const contDesc = unescapeDescription(contMatch[1]);
@@ -76,8 +81,26 @@ export function parseString(content, filePath = '<input>') {
         }
         // Try to parse as annotation
         const location = { file: filePath, line: lineNum };
-        const result = parseLine(inner, location);
+        const result = parseLine(text, location);
+        if (result.sourceDirective) {
+            currentSource = {
+                file: result.sourceDirective.file,
+                line: result.sourceDirective.line,
+                parent_symbol: result.sourceDirective.symbol ?? null,
+            };
+            lastAnnotation = null;
+            continue;
+        }
         if (result.annotation) {
+            if (allowRawAnnotationLines && currentSource) {
+                result.annotation.location = {
+                    file: currentSource.file,
+                    line: currentSource.line,
+                    parent_symbol: currentSource.parent_symbol ?? null,
+                    origin_file: filePath,
+                    origin_line: lineNum,
+                };
+            }
             annotations.push(result.annotation);
             lastAnnotation = result.annotation;
         }

package/dist/parser/parse-file.js.map

@@ -1 +1 @@
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package/dist/parser/parse-line.d.ts

@@ -7,10 +7,16 @@
  * @comment -- "Regex patterns designed with bounded quantifiers and explicit structure"
  */
 import type { Annotation, ParseDiagnostic, SourceLocation } from '../types/index.js';
+export interface SourceDirective {
+    file: string;
+    line: number;
+    symbol?: string;
+}
 export interface ParseLineResult {
     annotation: Annotation | null;
     diagnostic: ParseDiagnostic | null;
     isContinuation: boolean;
+    sourceDirective?: SourceDirective | null;
 }
 /**
  * Parse a single annotation line (after comment prefix has been stripped).

package/dist/parser/parse-line.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"parse-line.d.ts","sourceRoot":"","sources":["../../src/parser/parse-line.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,KAAK,EACV,UAAU,EACV,eAAe,EAAE,cAAc,EAChC,MAAM,mBAAmB,CAAC;AAsE3B,MAAM,WAAW,eAAe;IAC9B,UAAU,EAAE,UAAU,GAAG,IAAI,CAAC;IAC9B,UAAU,EAAE,eAAe,GAAG,IAAI,CAAC;IACnC,cAAc,EAAE,OAAO,CAAC;CACzB;AAED;;;;GAIG;AACH,wBAAgB,SAAS,CACvB,IAAI,EAAE,MAAM,EACZ,QAAQ,EAAE,cAAc,GACvB,eAAe,CA8KjB"}
+{"version":3,"file":"parse-line.d.ts","sourceRoot":"","sources":["../../src/parser/parse-line.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,KAAK,EACV,UAAU,EACV,eAAe,EAAE,cAAc,EAChC,MAAM,mBAAmB,CAAC;AA4E3B,MAAM,WAAW,eAAe;IAC9B,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,EAAE,MAAM,CAAC;IACb,MAAM,CAAC,EAAE,MAAM,CAAC;CACjB;AAED,MAAM,WAAW,eAAe;IAC9B,UAAU,EAAE,UAAU,GAAG,IAAI,CAAC;IAC9B,UAAU,EAAE,eAAe,GAAG,IAAI,CAAC;IACnC,cAAc,EAAE,OAAO,CAAC;IACxB,eAAe,CAAC,EAAE,eAAe,GAAG,IAAI,CAAC;CAC1C;AAED;;;;GAIG;AACH,wBAAgB,SAAS,CACvB,IAAI,EAAE,MAAM,EACZ,QAAQ,EAAE,cAAc,GACvB,eAAe,CA4LjB"}

package/dist/parser/parse-line.js

@@ -17,6 +17,9 @@ const THREAT_REF = String.raw `(?:#[a-zA-Z0-9_-]+|[A-Za-z]\w*(?:[_\- ][A-Za-z]\w
 const SEVERITY = String.raw `\[(P[0-3]|critical|high|medium|low)\]`;
 const EXT_REF = String.raw `([a-zA-Z]+:[A-Za-z0-9_:.\-]+)`;
 const DESC = String.raw `--\s*"((?:[^"\\]|\\.)*)"`;
+const SOURCE_FILE = String.raw `\S+`;
+const SOURCE_LINE = String.raw `[1-9]\d*`;
+const SOURCE_SYMBOL = String.raw `\S+`;
 // Capture external refs (0 or more, space-separated)
 const EXT_REFS_OPT = String.raw `((?:\s+[a-zA-Z]+:[A-Za-z0-9_:.\-]+)*)`;
 // ─── Verb-specific patterns ──────────────────────────────────────────
@@ -45,6 +48,8 @@ const PATTERNS = {
     assumes: new RegExp(String.raw `^@assumes\s+(${ASSET_REF})(?:\s+${DESC})?$`),
     // Comment — developer note, description only
     comment: new RegExp(String.raw `^@comment(?:\s+${DESC})?$`),
+    // Standalone .gal directive — sets logical source location for following annotations
+    source: new RegExp(String.raw `^@source\s+file:(${SOURCE_FILE})\s+line:(${SOURCE_LINE})(?:\s+symbol:(${SOURCE_SYMBOL}))?$`),
     // Special
     shield: new RegExp(String.raw `^@shield(?!:)(?:\s+${DESC})?$`),
     shield_begin: new RegExp(String.raw `^@shield:begin(?:\s+${DESC})?$`),
@@ -72,9 +77,9 @@ export function parseLine(text, location) {
         // Check for continuation line (-- "...")
         const contMatch = trimmed.match(new RegExp(String.raw `^${DESC}$`));
         if (contMatch) {
-            return { annotation: null, diagnostic: null, isContinuation: true };
+            return { annotation: null, diagnostic: null, isContinuation: true, sourceDirective: null };
         }
-        return { annotation: null, diagnostic: null, isContinuation: false };
+        return { annotation: null, diagnostic: null, isContinuation: false, sourceDirective: null };
     }
     const base = { location, raw: trimmed };
     let m;
@@ -181,6 +186,19 @@ export function parseLine(text, location) {
     if ((m = trimmed.match(PATTERNS.comment))) {
         return ok({ ...base, verb: 'comment', description: desc(m[1]) });
     }
+    // ── @source ──
+    if ((m = trimmed.match(PATTERNS.source))) {
+        return {
+            annotation: null,
+            diagnostic: null,
+            isContinuation: false,
+            sourceDirective: {
+                file: m[1],
+                line: Number(m[2]),
+                symbol: m[3] || undefined,
+            },
+        };
+    }
     // ── @shield ──
     if ((m = trimmed.match(PATTERNS.shield_begin))) {
         return ok({ ...base, verb: 'shield:begin', description: desc(m[1]) });
@@ -197,7 +215,7 @@ export function parseLine(text, location) {
         const knownVerbs = new Set([
             'asset', 'threat', 'control', 'mitigates', 'exposes', 'accepts',
             'transfers', 'flows', 'boundary', 'validates', 'audit', 'owns',
-            'handles', 'assumes', 'comment', 'shield', 'shield:begin', 'shield:end',
+            'handles', 'assumes', 'comment', 'source', 'shield', 'shield:begin', 'shield:end',
             // v1 compat
             'review', 'connects',
         ]);
@@ -216,11 +234,11 @@ export function parseLine(text, location) {
         }
     }
     // Not a GuardLink annotation (could be @param, @returns, etc.)
-    return { annotation: null, diagnostic: null, isContinuation: false };
+    return { annotation: null, diagnostic: null, isContinuation: false, sourceDirective: null };
 }
 // ─── Helpers ─────────────────────────────────────────────────────────
 function ok(annotation) {
-    return { annotation, diagnostic: null, isContinuation: false };
+    return { annotation, diagnostic: null, isContinuation: false, sourceDirective: null };
 }
 function desc(raw) {
     if (!raw)

package/dist/parser/parse-line.js.map

@@ -1 +1 @@
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package/dist/parser/parse-project.d.ts

@@ -8,6 +8,7 @@
  * @mitigates #parser against #dos using #resource-limits -- "DEFAULT_EXCLUDE skips build artifacts, tests; limits effective file count"
  * @flows ProjectRoot -> #parser via fast-glob -- "Directory traversal path"
  * @flows #parser -> ThreatModel via assembleModel -- "Aggregated threat model output"
+ * @comment -- "Scans standalone .gal files in addition to comment-based source annotations"
  * @boundary #parser and FileSystem (#fs-boundary) -- "Trust boundary between parser and disk I/O"
  */
 import type { ThreatModel, ParseDiagnostic } from '../types/index.js';

package/dist/parser/parse-project.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"parse-project.d.ts","sourceRoot":"","sources":["../../src/parser/parse-project.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;GAWG;AAIH,OAAO,KAAK,EACE,WAAW,EAAe,eAAe,EAStD,MAAM,mBAAmB,CAAC;AAI3B,MAAM,WAAW,mBAAmB;IAClC,6BAA6B;IAC7B,IAAI,EAAE,MAAM,CAAC;IACb,8DAA8D;IAC9D,OAAO,CAAC,EAAE,MAAM,EAAE,CAAC;IACnB,mEAAmE;IACnE,OAAO,CAAC,EAAE,MAAM,EAAE,CAAC;IACnB,uCAAuC;IACvC,OAAO,CAAC,EAAE,MAAM,CAAC;CAClB;AAuBD;;GAEG;AACH,wBAAsB,YAAY,CAAC,OAAO,EAAE,mBAAmB,GAAG,OAAO,CAAC;IACxE,KAAK,EAAE,WAAW,CAAC;IACnB,WAAW,EAAE,eAAe,EAAE,CAAC;CAChC,CAAC,CAuED"}
+{"version":3,"file":"parse-project.d.ts","sourceRoot":"","sources":["../../src/parser/parse-project.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;GAYG;AAIH,OAAO,KAAK,EACE,WAAW,EAAe,eAAe,EAStD,MAAM,mBAAmB,CAAC;AAI3B,MAAM,WAAW,mBAAmB;IAClC,6BAA6B;IAC7B,IAAI,EAAE,MAAM,CAAC;IACb,8DAA8D;IAC9D,OAAO,CAAC,EAAE,MAAM,EAAE,CAAC;IACnB,mEAAmE;IACnE,OAAO,CAAC,EAAE,MAAM,EAAE,CAAC;IACnB,uCAAuC;IACvC,OAAO,CAAC,EAAE,MAAM,CAAC;CAClB;AAwBD;;GAEG;AACH,wBAAsB,YAAY,CAAC,OAAO,EAAE,mBAAmB,GAAG,OAAO,CAAC;IACxE,KAAK,EAAE,WAAW,CAAC;IACnB,WAAW,EAAE,eAAe,EAAE,CAAC;CAChC,CAAC,CA6ED"}

package/dist/parser/parse-project.js

@@ -8,10 +8,11 @@
  * @mitigates #parser against #dos using #resource-limits -- "DEFAULT_EXCLUDE skips build artifacts, tests; limits effective file count"
  * @flows ProjectRoot -> #parser via fast-glob -- "Directory traversal path"
  * @flows #parser -> ThreatModel via assembleModel -- "Aggregated threat model output"
+ * @comment -- "Scans standalone .gal files in addition to comment-based source annotations"
  * @boundary #parser and FileSystem (#fs-boundary) -- "Trust boundary between parser and disk I/O"
  */
 import fg from 'fast-glob';
-import { relative } from 'node:path';
+import { isAbsolute, relative } from 'node:path';
 import { parseFile } from './parse-file.js';
 import { loadWorkspaceConfig } from '../workspace/index.js';
 const DEFAULT_INCLUDE = [
@@ -27,6 +28,7 @@ const DEFAULT_INCLUDE = [
     '**/*.html', '**/*.xml', '**/*.svg',
     '**/*.css',
     '**/*.ex', '**/*.exs',
+    '**/*.[gG][aA][lL]',
 ];
 const DEFAULT_EXCLUDE = [
     '**/node_modules/**', '**/dist/**', '**/build/**', '**/.git/**',
@@ -54,13 +56,19 @@ export async function parseProject(options) {
         const relPath = relative(root, file);
         // Normalize file paths to relative
         for (const ann of result.annotations) {
-            ann.location.file = relPath;
+            ann.location.file = normalizeLocationPath(ann.location.file, file, root);
+            if (ann.location.origin_file) {
+                ann.location.origin_file = normalizeLocationPath(ann.location.origin_file, file, root);
+            }
         }
         for (const diag of result.diagnostics) {
             diag.file = relPath;
         }
         if (result.annotations.length > 0) {
             filesWithAnnotations.add(relPath);
+            for (const ann of result.annotations) {
+                filesWithAnnotations.add(ann.location.file);
+            }
         }
         allAnnotations.push(...result.annotations);
         allDiagnostics.push(...result.diagnostics);
@@ -96,6 +104,13 @@ export async function parseProject(options) {
     model.external_refs = detectExternalRefs(model, root);
     return { model, diagnostics: allDiagnostics };
 }
+function normalizeLocationPath(locationFile, physicalFile, root) {
+    if (locationFile === physicalFile)
+        return relative(root, physicalFile);
+    if (isAbsolute(locationFile))
+        return relative(root, locationFile);
+    return locationFile.replaceAll('\\', '/');
+}
 function getAnnotationId(ann) {
     if ('id' in ann)
         return ann.id;

package/dist/parser/parse-project.js.map

@@ -1 +1 @@
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package/dist/review/index.d.ts

@@ -20,7 +20,7 @@ export interface ReviewableExposure {
     /** 1-based index in the review list */
     index: number;
     exposure: ThreatModelExposure;
-    /** Stable ID for MCP: "file:line" */
+    /** Stable ID for MCP */
     id: string;
 }
 export interface ReviewAction {
@@ -32,6 +32,8 @@ export interface ReviewResult {
     action: ReviewAction;
     /** Lines inserted into the file (empty for skip) */
     linesInserted: number;
+    /** Physical file modified (or logical file for skip) */
+    targetFile: string;
 }
 /**
  * Get all unmitigated exposures eligible for review, sorted by severity.