gsd-pi 2.80.0-dev.c5f2443b3 → 2.80.0-dev.e51d2c88c

package/dist/resources/extensions/gsd/auto-dashboard.js

@@ -1,10 +1,4 @@
-/**
- * Auto-mode Dashboard — progress widget rendering, elapsed time formatting,
- * unit description helpers, and slice progress caching.
- *
- * Pure functions that accept specific parameters — no module-level globals
- * or AutoContext dependency. State accessors are passed as callbacks.
- */
+// GSD-2 + src/resources/extensions/gsd/auto-dashboard.ts - Auto-mode progress widget rendering and dashboard helpers.
 import { getCurrentBranch } from "./worktree.js";
 import { getActiveHook } from "./post-unit-hooks.js";
 import { getLedger, getProjectTotals } from "./metrics.js";
@@ -25,6 +19,7 @@ import { formatRtkSavingsLabel, getRtkSessionSavings, } from "../shared/rtk-sess
 import { logWarning } from "./workflow-logger.js";
 import { formattedShortcutPair } from "./shortcut-defs.js";
 import { homedir } from "node:os";
+import { readUnitRuntimeRecord } from "./unit-runtime.js";
 // ─── UAT Slice Extraction ─────────────────────────────────────────────────────
 /**
  * Extract the target slice ID from a run-uat unit ID (e.g. "M001/S01" → "S01").
@@ -165,6 +160,30 @@ export function formatWidgetTokens(count) {
         return `${(count / 1000000).toFixed(1)}M`;
     return `${Math.round(count / 1000000)}M`;
 }
+export function formatRuntimeHealthSignal(record, now = Date.now()) {
+    if (!record)
+        return null;
+    const idleMs = Math.max(0, now - record.lastProgressAt);
+    const idleMinutes = Math.floor(idleMs / 60_000);
+    if ((record.recoveryAttempts ?? 0) > 0 || record.phase === "recovered" || record.lastProgressKind.includes("recovery")) {
+        return {
+            level: "yellow",
+            summary: "Recovering",
+            detail: `retry ${record.recoveryAttempts ?? 1} after ${record.lastRecoveryReason ?? "idle"} stall`,
+        };
+    }
+    if (record.progressCount === 0 && idleMs >= 60_000) {
+        return {
+            level: "yellow",
+            summary: "Waiting on provider",
+            detail: `no output for ${idleMinutes}m`,
+        };
+    }
+    return null;
+}
+export function shouldRenderRoadmapProgress(progress) {
+    return !!progress && progress.total > 0;
+}
 // ─── ETA Estimation ──────────────────────────────────────────────────────────
 /**
  * Estimate remaining time based on average unit duration from the metrics ledger.
@@ -499,6 +518,7 @@ export function updateProgressWidget(ctx, unitType, unitId, state, accessors, ti
         let cachedLines;
         let cachedWidth;
         let cachedRtkLabel;
+        let cachedRuntimeRecord = null;
         const refreshRtkLabel = () => {
             try {
                 const sessionId = ctx.sessionManager.getSessionId();
@@ -510,7 +530,16 @@ export function updateProgressWidget(ctx, unitType, unitId, state, accessors, ti
                 cachedRtkLabel = null;
             }
         };
+        const refreshRuntimeRecord = () => {
+            try {
+                cachedRuntimeRecord = readUnitRuntimeRecord(accessors.getBasePath(), unitType, unitId);
+            }
+            catch {
+                cachedRuntimeRecord = null;
+            }
+        };
         refreshRtkLabel();
+        refreshRuntimeRecord();
         const pulseTimer = setInterval(() => {
             pulseBright = !pulseBright;
             cachedLines = undefined;
@@ -526,6 +555,7 @@ export function updateProgressWidget(ctx, unitType, unitId, state, accessors, ti
                     updateSliceProgressCache(accessors.getBasePath(), mid.id, slice?.id);
                 }
                 refreshRtkLabel();
+                refreshRuntimeRecord();
                 cachedLines = undefined;
             }
             catch (err) { /* non-fatal */
@@ -555,13 +585,16 @@ export function updateProgressWidget(ctx, unitType, unitId, state, accessors, ti
                 const modeTag = accessors.isStepMode() ? "NEXT" : "AUTO";
                 // Health indicator in header
                 const score = computeProgressScore();
-                const healthColor = score.level === "green" ? "success"
-                    : score.level === "yellow" ? "warning"
+                const runtimeSignal = formatRuntimeHealthSignal(cachedRuntimeRecord);
+                const healthLevel = runtimeSignal?.level ?? score.level;
+                const healthSummary = runtimeSignal?.summary ?? score.summary;
+                const healthColor = healthLevel === "green" ? "success"
+                    : healthLevel === "yellow" ? "warning"
                         : "error";
-                const healthIcon = score.level === "green" ? GLYPH.statusActive
-                    : score.level === "yellow" ? "!"
+                const healthIcon = healthLevel === "green" ? GLYPH.statusActive
+                    : healthLevel === "yellow" ? "!"
                         : "x";
-                const healthStr = `  ${theme.fg(healthColor, healthIcon)} ${theme.fg(healthColor, score.summary)}`;
+                const healthStr = `  ${theme.fg(healthColor, healthIcon)} ${theme.fg(healthColor, healthSummary)}`;
                 const headerLeft = `${pad}${dot} ${theme.fg("accent", theme.bold("GSD"))}  ${theme.fg("success", modeTag)}${healthStr}`;
                 // ETA in header right, after elapsed
                 const eta = estimateTimeRemaining();
@@ -573,7 +606,10 @@ export function updateProgressWidget(ctx, unitType, unitId, state, accessors, ti
                     : "";
                 lines.push(rightAlign(headerLeft, headerRight, width));
                 // Show health signal details when degraded (yellow/red)
-                if (score.level !== "green" && score.signals.length > 0 && widgetMode !== "min") {
+                if (runtimeSignal?.detail && widgetMode !== "min") {
+                    lines.push(`${pad}  ${theme.fg("dim", runtimeSignal.detail)}`);
+                }
+                else if (score.level !== "green" && score.signals.length > 0 && widgetMode !== "min") {
                     // Show up to 3 most relevant signals in compact form
                     const topSignals = score.signals
                         .filter(s => s.kind === "negative")
@@ -645,7 +681,7 @@ export function updateProgressWidget(ctx, unitType, unitId, state, accessors, ti
                     lines.push(rightAlign(actionLeft, theme.fg("dim", phaseLabel), width));
                     // Progress bar
                     const roadmapSlices = mid ? getRoadmapSlicesSync() : null;
-                    if (roadmapSlices) {
+                    if (shouldRenderRoadmapProgress(roadmapSlices)) {
                         const { done, total, activeSliceTasks } = roadmapSlices;
                         const barWidth = Math.max(6, Math.min(18, Math.floor(width * 0.25)));
                         const pct = total > 0 ? done / total : 0;
@@ -706,7 +742,7 @@ export function updateProgressWidget(ctx, unitType, unitId, state, accessors, ti
                     ? Math.floor(width * (width >= 100 ? 0.45 : 0.50))
                     : width;
                 const leftLines = [];
-                if (roadmapSlices) {
+                if (shouldRenderRoadmapProgress(roadmapSlices)) {
                     const { done, total, activeSliceTasks } = roadmapSlices;
                     const barWidth = Math.max(6, Math.min(18, Math.floor(leftColWidth * 0.4)));
                     const pct = total > 0 ? done / total : 0;

package/dist/resources/extensions/gsd/auto-dispatch.js

@@ -93,6 +93,16 @@ export function hasPendingDeepStage(prefs, basePath) {
     const gate = getDeepStageGate(prefs, basePath);
     return gate.status === "pending" || gate.status === "blocked";
 }
+export function shouldRunDeepProjectSetup(state, prefs, basePath, options = {}) {
+    if (options.hasSurvivorBranch === true)
+        return false;
+    if (state.phase !== "pre-planning" &&
+        state.phase !== "needs-discussion" &&
+        state.phase !== "planning") {
+        return false;
+    }
+    return hasPendingDeepStage(prefs, basePath);
+}
 function missingSliceStop(mid, phase) {
     return {
         action: "stop",

package/dist/resources/extensions/gsd/auto-post-unit.js

@@ -25,7 +25,7 @@ import { verifyExpectedArtifact, resolveExpectedArtifactPath, writeBlockerPlaceh
 import { regenerateIfMissing } from "./workflow-projections.js";
 import { syncStateToProjectRoot } from "./auto-worktree.js";
 import { normalizeWorktreePathForCompare } from "./worktree-root.js";
-import { isDbAvailable, getTask, getSlice, getMilestone, updateTaskStatus, _getAdapter } from "./gsd-db.js";
+import { isDbAvailable, getTask, getSlice, getMilestone, updateTaskStatus, _getAdapter, getVerificationEvidence } from "./gsd-db.js";
 import { renderPlanCheckboxes } from "./markdown-renderer.js";
 import { consumeSignal } from "./session-status-io.js";
 import { checkPostUnitHooks, isRetryPending, consumeRetryTrigger, persistHookState, resolveHookArtifactPath, } from "./post-unit-hooks.js";
@@ -719,21 +719,21 @@ export async function postUnitPreVerification(pctx, opts) {
                     }
                 }
                 // Evidence cross-reference (execute-task only)
-                // Verification evidence is passed via the complete-task tool call and
-                // stored in the SUMMARY.md on disk — not available as structured data
-                // in the DB. The evidence collector tracks actual bash tool calls, so
-                // we can still detect units that claimed success but ran no commands.
+                // Only compare against concrete command evidence persisted by the task
+                // completion tool. A prose Verify field can be satisfied later by the
+                // host verification gate, so it is not enough to accuse the unit.
                 if (safetyConfig.evidence_cross_reference && s.currentUnit.type === "execute-task") {
                     try {
                         const actual = getEvidence();
                         const bashCalls = actual.filter(e => e.kind === "bash");
-                        // If the task is marked complete but zero bash commands were run,
-                        // it's suspicious — the LLM may have fabricated results.
                         if (sMid && sSid && sTid && isDbAvailable()) {
                             const taskRow = getTask(sMid, sSid, sTid);
-                            if (taskRow?.status === "complete" && taskRow.verify && bashCalls.length === 0) {
-                                logWarning("safety", "task marked complete with verification commands but no bash calls were executed");
-                                ctx.ui.notify(`Safety: task ${sTid} has verification commands but no bash calls were recorded`, "warning");
+                            const claimedCommands = getVerificationEvidence(sMid, sSid, sTid)
+                                .map((row) => row.command)
+                                .filter((command) => typeof command === "string" && command.trim().length > 0);
+                            if (taskRow?.status === "complete" && claimedCommands.length > 0 && bashCalls.length === 0) {
+                                logWarning("safety", "task claimed verification command evidence but no execution tool calls were recorded");
+                                ctx.ui.notify(`Safety: task ${sTid} claimed command evidence but no execution tool calls were recorded`, "warning");
                             }
                         }
                     }

package/dist/resources/extensions/gsd/auto-prompts.js

@@ -6,7 +6,7 @@
  * utility.
  */
 import { loadFile, parseContinue, parseSummary, loadActiveOverrides, formatOverridesSection, parseTaskPlanFile } from "./files.js";
-import { hasVerdict, getUatType } from "./verdict-parser.js";
+import { hasVerdict, getUatType, extractVerdict } from "./verdict-parser.js";
 import { loadPrompt, inlineTemplate } from "./prompt-loader.js";
 import { resolveMilestoneFile, resolveSliceFile, resolveSlicePath, resolveTasksDir, resolveTaskFiles, resolveTaskFile, relMilestoneFile, relSliceFile, relSlicePath, relMilestonePath, resolveGsdRootFile, relGsdRootFile, resolveRuntimeFile, } from "./paths.js";
 import { resolveSkillDiscoveryMode, resolveInlineLevel, loadEffectiveGSDPreferences, resolveAllSkillReferences } from "./preferences.js";
@@ -21,10 +21,12 @@ import { assertGateCoverage, getGatesForTurn, } from "./gate-registry.js";
 import { formatDecisionsCompact, formatRequirementsCompact } from "./structured-data-formatter.js";
 import { readPhaseAnchor, formatAnchorForPrompt } from "./phase-anchor.js";
 import { composeContextModeInstructions, composeInlinedContext } from "./unit-context-composer.js";
+import { readCompactionSnapshot } from "./compaction-snapshot.js";
 import { logWarning } from "./workflow-logger.js";
 import { inlineGraphSubgraph } from "./graph-context.js";
 import { buildExtractionStepsBlock } from "./commands-extract-learnings.js";
 import { resolveSkillManifest, warnIfManifestHasMissingSkills } from "./skill-manifest.js";
+import { classifyProject } from "./detection.js";
 // ─── Preamble Cap ─────────────────────────────────────────────────────────────
 /**
  * Historical static ceiling for the preamble cap. Kept as an upper bound even
@@ -62,6 +64,104 @@ function resolvePromptBudgets() {
 function resolveSummaryBudgetChars() {
     return resolvePromptBudgets().summaryBudgetChars;
 }
+function formatProjectClassificationForPlanning(classification) {
+    const sampleFiles = classification.contentFiles.slice(0, 8);
+    const sample = sampleFiles.length > 0 ? sampleFiles.map((file) => `\`${file}\``).join(", ") : "(none)";
+    const lines = [
+        "### Project Classification",
+        "",
+        `- **Kind:** ${classification.kind}`,
+        `- **Content files:** ${classification.contentFiles.length}`,
+        `- **Sample files:** ${sample}`,
+        `- **Reason:** ${classification.reason}`,
+        "",
+    ];
+    if (classification.kind === "untyped-existing") {
+        if (classification.contentFiles.length <= 2) {
+            lines.push("**Workflow sizing:** This is a tiny existing untyped project. Prefer exactly one slice unless the milestone request clearly spans multiple independent user-visible capabilities.");
+        }
+        else if (classification.contentFiles.length <= 5) {
+            lines.push("**Workflow sizing:** This is a small existing untyped project. Prefer 1-2 slices unless the milestone request clearly spans multiple independent user-visible capabilities.");
+        }
+        else {
+            lines.push("**Workflow sizing:** Existing untyped project. Use generic file-level workflow guidance and size slices by real capability boundaries, not by missing tooling markers.");
+        }
+    }
+    else if (classification.kind === "greenfield") {
+        lines.push("**Workflow sizing:** No project content exists yet. Use normal greenfield sizing for the requested scope.");
+    }
+    else if (classification.kind === "typed-existing") {
+        lines.push("**Workflow sizing:** Known project markers exist. Use normal ecosystem-aware planning guidance.");
+    }
+    else {
+        lines.push("**Workflow sizing:** Invalid repository state. Planning should surface this as a blocker rather than inventing project structure.");
+    }
+    return lines.join("\n");
+}
+function normalizeArtifactRef(value) {
+    return value.trim().replace(/^[-\s]+/, "").replace(/^["'`]+|["'`]+$/g, "").replaceAll("\\", "/").replace(/^\.\//, "");
+}
+function parseCoveredArtifacts(validationContent) {
+    const covered = new Set();
+    const lines = validationContent.split(/\r?\n/);
+    let inCoveredArtifacts = false;
+    for (const line of lines) {
+        if (/^\s*covered[-_]?artifacts\s*:/i.test(line)) {
+            inCoveredArtifacts = true;
+            const inline = line.split(/covered[-_]?artifacts\s*:/i)[1]?.trim();
+            if (inline && inline !== "[]") {
+                inline.replace(/^\[|\]$/g, "").split(",").map(normalizeArtifactRef).filter(Boolean).forEach((item) => covered.add(item));
+            }
+            continue;
+        }
+        if (!inCoveredArtifacts)
+            continue;
+        if (/^\S/.test(line) && !/^\s*-/.test(line))
+            break;
+        const item = line.match(/^\s*-\s*(.+)$/)?.[1];
+        if (item)
+            covered.add(normalizeArtifactRef(item));
+    }
+    return covered;
+}
+function isValidationFreshOrApplicable(validationContent, currentArtifacts) {
+    if (!validationContent)
+        return false;
+    if (!/validation_metadata:/i.test(validationContent))
+        return false;
+    const coveredArtifacts = parseCoveredArtifacts(validationContent);
+    if (coveredArtifacts.size === 0)
+        return false;
+    return currentArtifacts
+        .map(normalizeArtifactRef)
+        .filter(Boolean)
+        .every((artifact) => coveredArtifacts.has(artifact));
+}
+function formatCloseoutReviewInstructions(validationContent, validationRel, currentArtifacts) {
+    const verdict = validationContent ? extractVerdict(validationContent) : null;
+    const validationFresh = isValidationFreshOrApplicable(validationContent, currentArtifacts);
+    if (verdict === "pass" && validationFresh) {
+        return [
+            "### Passing Validation Artifact",
+            "",
+            `A passing validation artifact is present at \`${validationRel}\`. Treat it as authoritative for success criteria, requirement coverage, verification classes, and cross-slice integration.`,
+            "",
+            "Do not delegate fresh reviewer/security/tester audits and do not redo the validation evidence review unless the artifact is internally inconsistent with the inlined summaries. Focus this unit on final milestone narrative, learnings, PROJECT/requirements updates, and `gsd_complete_milestone`.",
+        ].join("\n");
+    }
+    if (verdict) {
+        return [
+            "### Validation Requires Attention",
+            "",
+            `A validation artifact is present at \`${validationRel}\` with verdict \`${verdict}\`, but it is missing freshness metadata or does not cover current milestone artifacts. Do not treat the milestone as complete unless the issues are resolved and evidence supports completion.`,
+        ].join("\n");
+    }
+    return [
+        "### No Passing Validation Artifact",
+        "",
+        `No passing validation artifact was found at \`${validationRel}\`. Use the full closeout review path before completion.`,
+    ].join("\n");
+}
 function capPreamble(preamble) {
     // Cap inlined context at min(historical 30K ceiling, scaled inline budget).
     // The ceiling preserves pre-fix behavior for large-window users; the scaled
@@ -79,8 +179,19 @@ function renderContextModeForPrompt(unitType, base, renderMode = "standalone") {
         renderMode,
     });
 }
-function prependContextModeToBlock(unitType, base, block, renderMode = "standalone") {
+function renderContextModeBlockForPrompt(unitType, base, renderMode = "standalone") {
     const contextMode = renderContextModeForPrompt(unitType, base, renderMode);
+    if (!contextMode)
+        return "";
+    if (renderMode === "nested")
+        return contextMode;
+    const snapshot = readCompactionSnapshot(base);
+    if (!snapshot?.trim())
+        return contextMode;
+    return `${contextMode}\n\n## Context Snapshot\nSource: \`.gsd/last-snapshot.md\`\n\n${snapshot.trimEnd()}`;
+}
+function prependContextModeToBlock(unitType, base, block, renderMode = "standalone") {
+    const contextMode = renderContextModeBlockForPrompt(unitType, base, renderMode);
     if (!contextMode)
         return block;
     if (!block.trim())
@@ -1465,6 +1576,7 @@ export async function buildPlanMilestonePrompt(mid, midTitle, base, level) {
     const researchAnchor = readPhaseAnchor(base, mid, "research-milestone");
     if (researchAnchor)
         inlined.push(formatAnchorForPrompt(researchAnchor));
+    inlined.push(formatProjectClassificationForPlanning(classifyProject(base)));
     inlined.push(await inlineFile(contextPath, contextRel, "Milestone Context"));
     const researchInline = await inlineFileOptional(researchPath, researchRel, "Milestone Research");
     if (researchInline)
@@ -2017,6 +2129,9 @@ export async function buildCompleteMilestonePrompt(mid, midTitle, base, level) {
     const inlineLevel = level ?? resolveInlineLevel();
     const roadmapPath = resolveMilestoneFile(base, mid, "ROADMAP");
     const roadmapRel = relMilestoneFile(base, mid, "ROADMAP");
+    const validationPath = resolveMilestoneFile(base, mid, "VALIDATION");
+    const validationRel = relMilestoneFile(base, mid, "VALIDATION");
+    const validationContent = validationPath ? await loadFile(validationPath) : null;
     const inlined = [];
     inlined.push(await inlineFile(roadmapPath, roadmapRel, "Milestone Roadmap"));
     // Inline all slice summaries (deduplicated by slice ID)
@@ -2056,6 +2171,13 @@ export async function buildCompleteMilestonePrompt(mid, midTitle, base, level) {
         const pathList = summaryRelPaths.map(p => `- \`${p}\``).join("\n");
         inlined.push(`### On-demand Slice Summaries\n\nExcerpted above. Read the full file for any slice when the excerpt's section heads don't carry enough narrative for the milestone summary you're drafting:\n\n${pathList}`);
     }
+    const validationContext = [
+        formatCloseoutReviewInstructions(validationContent, validationRel, [validationRel, roadmapRel, ...summaryRelPaths]),
+    ];
+    if (validationContent) {
+        validationContext.push(`### Milestone Validation\nSource: \`${validationRel}\`\n\n${validationContent.trim()}`);
+    }
+    inlined.unshift(...validationContext);
     // Inline root GSD files (skip for minimal — completion can read these if needed)
     if (inlineLevel !== "minimal") {
         const requirementsInline = await inlineRequirementsFromDb(base, mid, undefined, inlineLevel);

package/dist/resources/extensions/gsd/auto-recovery.js

@@ -12,7 +12,7 @@ import { appendEvent } from "./workflow-events.js";
 import { atomicWriteSync } from "./atomic-write.js";
 import { clearParseCache } from "./files.js";
 import { parseRoadmap as parseLegacyRoadmap, parsePlan as parseLegacyPlan } from "./parsers-legacy.js";
-import { isDbAvailable, getTask, getSlice, getSliceTasks, getPendingGates, updateTaskStatus, updateSliceStatus, insertSlice, getMilestone, refreshOpenDatabaseFromDisk } from "./gsd-db.js";
+import { isDbAvailable, getTask, getSlice, getSliceTasks, getPendingGates, updateTaskStatus, updateSliceStatus, insertSlice, getMilestone, refreshOpenDatabaseFromDisk, getCompletedMilestoneTaskFileHints, getMilestoneCommitAttributionShas, recordMilestoneCommitAttribution } from "./gsd-db.js";
 import { isValidationTerminal } from "./state.js";
 import { getErrorMessage } from "./error-utils.js";
 import { logWarning, logError } from "./workflow-logger.js";
@@ -30,7 +30,49 @@ import { getProjectResearchStatus } from "./project-research-policy.js";
 // Re-export so existing consumers of auto-recovery.ts keep working.
 export { resolveExpectedArtifactPath, diagnoseExpectedArtifact };
 export { classifyMilestoneSummaryContent, } from "./milestone-summary-classifier.js";
-// ─── Artifact Resolution & Verification ───────────────────────────────────────
+export function refreshRecoveryDbForArtifact(unitType, unitId) {
+    if (unitType !== "plan-slice" && unitType !== "execute-task")
+        return { ok: true };
+    if (!isDbAvailable())
+        return { ok: true };
+    if (!refreshOpenDatabaseFromDisk()) {
+        return {
+            ok: false,
+            fatal: unitType === "execute-task",
+            reason: `${unitType}-db-refresh-failed`,
+            message: `Stuck recovery found ${unitType} ${unitId} artifacts, but the DB refresh failed.`,
+        };
+    }
+    if (unitType !== "execute-task")
+        return { ok: true };
+    const { milestone: mid, slice: sid, task: tid } = parseUnitId(unitId);
+    if (!mid || !sid || !tid) {
+        return {
+            ok: false,
+            fatal: true,
+            reason: "execute-task-invalid-unit-id",
+            message: `Stuck recovery found execute-task ${unitId} artifacts, but the unit id could not be parsed for DB verification.`,
+        };
+    }
+    const task = getTask(mid, sid, tid);
+    if (!task) {
+        return {
+            ok: false,
+            fatal: true,
+            reason: "execute-task-artifact-db-missing",
+            message: `Stuck recovery found execute-task ${unitId} artifacts, but no matching DB task row exists after refresh.`,
+        };
+    }
+    if (!isClosedStatus(task.status)) {
+        return {
+            ok: false,
+            fatal: true,
+            reason: "execute-task-artifact-db-mismatch",
+            message: `Stuck recovery found execute-task ${unitId} artifacts, but the DB task status is still '${task.status}' after refresh.`,
+        };
+    }
+    return { ok: true };
+}
 function hasCapturedWorkflowPrefs(base) {
     const prefsPath = resolveExpectedArtifactPath("workflow-preferences", "WORKFLOW-PREFS", base);
     if (!prefsPath || !existsSync(prefsPath))
@@ -110,17 +152,32 @@ export function hasImplementationArtifacts(basePath, milestoneId) {
         // milestone commits instead of treating the self-diff as proof of no work.
         if (changedFiles.length === 0) {
             if (milestoneId && currentBranch === integrationBranch) {
-                const tagged = getChangedFilesFromMilestoneTaggedCommits(basePath, milestoneId);
-                if (!tagged.ok)
+                const milestoneEvidence = getChangedFilesFromMilestoneEvidence(basePath, milestoneId);
+                if (!milestoneEvidence.ok)
                     return "unknown";
-                if (tagged.matched)
-                    return classifyImplementationFiles(tagged.files);
+                if (milestoneEvidence.matched)
+                    return classifyImplementationFiles(milestoneEvidence.files);
             }
             if (currentBranch && currentBranch !== "HEAD")
                 return "absent";
             return "unknown";
         }
-        return classifyImplementationFiles(changedFiles);
+        const branchClassification = classifyImplementationFiles(changedFiles);
+        if (branchClassification === "present")
+            return "present";
+        // A completing milestone branch can have a non-empty diff containing only
+        // .gsd/ closeout files after implementation commits already landed on the
+        // recorded integration branch. In that topology, the branch diff alone is
+        // insufficient; use the same milestone-tagged evidence fallback as the
+        // self-diff retry path before declaring the milestone implementation-free.
+        if (milestoneId) {
+            const milestoneEvidence = getChangedFilesFromMilestoneEvidence(basePath, milestoneId);
+            if (!milestoneEvidence.ok)
+                return "unknown";
+            if (milestoneEvidence.matched)
+                return classifyImplementationFiles(milestoneEvidence.files);
+        }
+        return "absent";
     }
     catch (e) {
         // Non-fatal — if git operations fail, return unknown so callers can decide
@@ -148,6 +205,9 @@ function classifyImplementationFiles(files) {
 function isImplementationPath(file) {
     return !file.startsWith(".gsd/") && !file.startsWith(".gsd\\");
 }
+function normalizeRepoPath(file) {
+    return file.trim().replace(/\\/g, "/").replace(/^\.\/+/, "");
+}
 /**
  * Detect the main/master branch name.
  */
@@ -217,7 +277,7 @@ function getChangedFilesFromMilestoneTaggedCommits(basePath, milestoneId) {
     ]);
     if (!scoped.ok)
         return scoped;
-    if (scoped.matched)
+    if (scoped.matched && classifyImplementationFiles(scoped.files) === "present")
         return scoped;
     // Fallback (#5033): when .gsd/ is gitignored / external / untracked, the
     // path-scoped scan matches no commits even though GSD-tagged commits
@@ -228,9 +288,137 @@ function getChangedFilesFromMilestoneTaggedCommits(basePath, milestoneId) {
     // Intentionally unbounded — symmetric with the primary scan, and avoids
     // reintroducing the rolling-depth failure class removed in #4699 where
     // milestone evidence aged out behind unrelated activity.
-    return scanGsdTaggedCommits(basePath, milestoneId, [
+    const unscoped = scanGsdTaggedCommits(basePath, milestoneId, [
         "log", "--format=%H%x1f%B%x1e", "HEAD",
     ]);
+    if (!unscoped.ok)
+        return scoped.matched ? scoped : unscoped;
+    if (!unscoped.matched)
+        return scoped;
+    return {
+        ok: true,
+        matched: true,
+        files: [...new Set([...scoped.files, ...unscoped.files])],
+    };
+}
+function getChangedFilesFromMilestoneEvidence(basePath, milestoneId) {
+    const tagged = getChangedFilesFromMilestoneTaggedCommits(basePath, milestoneId);
+    if (!tagged.ok)
+        return tagged;
+    if (tagged.matched && classifyImplementationFiles(tagged.files) === "present")
+        return tagged;
+    const attributed = getChangedFilesFromAttributedMilestoneCommits(basePath, milestoneId);
+    if (!attributed.ok)
+        return tagged.matched ? tagged : attributed;
+    if (attributed.matched && classifyImplementationFiles(attributed.files) === "present")
+        return attributed;
+    const backfilled = backfillChangedFilesFromUntaggedMilestoneCommits(basePath, milestoneId);
+    if (!backfilled.ok)
+        return tagged.matched ? tagged : attributed.matched ? attributed : backfilled;
+    if (!backfilled.matched) {
+        if (tagged.matched)
+            return tagged;
+        return attributed.matched ? attributed : backfilled;
+    }
+    return {
+        ok: true,
+        matched: true,
+        files: [...new Set([...tagged.files, ...attributed.files, ...backfilled.files])],
+    };
+}
+function getChangedFilesFromAttributedMilestoneCommits(basePath, milestoneId) {
+    try {
+        const shas = getMilestoneCommitAttributionShas(milestoneId);
+        if (shas.length === 0)
+            return { ok: true, matched: false, files: [] };
+        const files = new Set();
+        let matched = false;
+        for (const sha of shas) {
+            if (!isFullCommitSha(sha))
+                continue;
+            const commitFiles = getChangedFilesForCommit(basePath, sha);
+            if (commitFiles.length === 0)
+                continue;
+            matched = true;
+            for (const file of commitFiles)
+                files.add(file);
+        }
+        return { ok: true, matched, files: [...files] };
+    }
+    catch (e) {
+        logWarning("recovery", `milestone attribution scan failed: ${e.message}`);
+        return { ok: false, matched: false, files: [] };
+    }
+}
+function backfillChangedFilesFromUntaggedMilestoneCommits(basePath, milestoneId) {
+    try {
+        const milestone = getMilestone(milestoneId);
+        const milestoneStartedAt = milestone?.created_at ? Math.floor(Date.parse(milestone.created_at) / 1000) * 1000 : NaN;
+        if (!Number.isFinite(milestoneStartedAt))
+            return { ok: true, matched: false, files: [] };
+        const taskFileHints = getCompletedMilestoneTaskFileHints(milestoneId);
+        if (taskFileHints.length === 0)
+            return { ok: true, matched: false, files: [] };
+        const hintSet = new Set(taskFileHints.map(normalizeRepoPath).filter(Boolean));
+        if (hintSet.size === 0)
+            return { ok: true, matched: false, files: [] };
+        const records = getCommitRecords(basePath);
+        const files = new Set();
+        let matched = false;
+        for (const record of records) {
+            if (!isFullCommitSha(record.hash))
+                continue;
+            if (Date.parse(record.committedAt) < milestoneStartedAt)
+                continue;
+            if (record.parents.trim().split(/\s+/).filter(Boolean).length > 1)
+                continue;
+            if (commitMessageHasGsdTrailer(record.message))
+                continue;
+            const commitFiles = getChangedFilesForCommit(basePath, record.hash);
+            const implementationFiles = commitFiles.map(normalizeRepoPath).filter(isImplementationPath);
+            if (implementationFiles.length === 0)
+                continue;
+            if (!implementationFiles.some((file) => hintSet.has(file)))
+                continue;
+            matched = true;
+            for (const file of implementationFiles)
+                files.add(file);
+            recordMilestoneCommitAttribution({
+                commitSha: record.hash,
+                milestoneId,
+                source: "backfill",
+                confidence: 0.8,
+                files: implementationFiles,
+                createdAt: new Date().toISOString(),
+            });
+        }
+        return { ok: true, matched, files: [...files] };
+    }
+    catch (e) {
+        logWarning("recovery", `milestone attribution backfill failed: ${e.message}`);
+        return { ok: false, matched: false, files: [] };
+    }
+}
+function getCommitRecords(basePath) {
+    const logOutput = execFileSync("git", ["log", "--format=%H%x1f%P%x1f%cI%x1f%B%x1e", "HEAD"], {
+        cwd: basePath,
+        stdio: ["ignore", "pipe", "pipe"],
+        encoding: "utf-8",
+    });
+    return logOutput
+        .split("\x1e")
+        .map((record) => record.trim())
+        .filter(Boolean)
+        .flatMap((record) => {
+        const parts = record.split("\x1f");
+        if (parts.length < 4)
+            return [];
+        const [hash, parents, committedAt, ...messageParts] = parts;
+        return [{ hash: hash.trim(), parents: parents.trim(), committedAt: committedAt.trim(), message: messageParts.join("\x1f") }];
+    });
+}
+function isFullCommitSha(value) {
+    return /^[0-9a-f]{40}$/i.test(value);
 }
 function scanGsdTaggedCommits(basePath, milestoneId, gitArgs) {
     try {

package/dist/resources/extensions/gsd/auto-start.js

@@ -487,9 +487,8 @@ export async function bootstrapAutoSession(s, ctx, pi, base, verboseMode, reques
             hasSurvivorBranch = false;
         }
         const effectivePrefs = loadEffectiveGSDPreferences(base)?.preferences;
-        const deepProjectStagePending = !hasSurvivorBranch
-            ? (await import("./auto-dispatch.js")).hasPendingDeepStage(effectivePrefs, base)
-            : false;
+        const { shouldRunDeepProjectSetup } = await import("./auto-dispatch.js");
+        const deepProjectStagePending = shouldRunDeepProjectSetup(state, effectivePrefs, base, { hasSurvivorBranch });
         if (deepProjectStagePending) {
             // Deep project-level setup runs before the first milestone exists. Let
             // the auto loop dispatch workflow-preferences / project / requirements