gsd-pi 2.80.0-dev.c5c38454b → 2.80.0-dev.e146beb20

package/packages/pi-coding-agent/dist/resources/extensions/memory/storage.js.map

@@ -1 +1 @@
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\"pending\" | \"claimed\" | \"done\" | \"error\";\n\tworker_id: string | null;\n\townership_token: string | null;\n\tlease_expires_at: string | null;\n\terror_message: string | null;\n\tcreated_at: string;\n\tupdated_at: string;\n}\n\nexport class MemoryStorage {\n\tprivate db: SqlJsDatabase;\n\tprivate dbPath: string;\n\tprivate persistTimer: ReturnType<typeof setTimeout> | null = null;\n\n\tprivate constructor(db: SqlJsDatabase, dbPath: string) {\n\t\tthis.db = db;\n\t\tthis.dbPath = dbPath;\n\t}\n\n\tstatic async create(dbPath: string): Promise<MemoryStorage> {\n\t\tconst dir = dirname(dbPath);\n\t\tif (!existsSync(dir)) {\n\t\t\tmkdirSync(dir, { recursive: true });\n\t\t}\n\n\t\tconst SQL = await initSqlJs();\n\t\tconst buffer = existsSync(dbPath) ? readFileSync(dbPath) : undefined;\n\t\tconst db = buffer ? new SQL.Database(buffer) : new SQL.Database();\n\n\t\tdb.run(\"PRAGMA journal_mode = WAL\");\n\t\tdb.run(\"PRAGMA synchronous = NORMAL\");\n\t\tdb.run(\"PRAGMA busy_timeout = 5000\");\n\n\t\tconst storage = new MemoryStorage(db, dbPath);\n\t\tstorage.initSchema();\n\t\treturn storage;\n\t}\n\n\tprivate persist(): void {\n\t\tconst data = this.db.export();\n\t\twriteFileSync(this.dbPath, Buffer.from(data));\n\t}\n\n\tprivate schedulePersist(): void {\n\t\tif (this.persistTimer) {\n\t\t\tclearTimeout(this.persistTimer);\n\t\t}\n\t\tthis.persistTimer = setTimeout(() => {\n\t\t\tthis.persistTimer = null;\n\t\t\tthis.persist();\n\t\t}, 500);\n\t}\n\n\tprivate initSchema(): void {\n\t\tthis.db.run(`\n\t\t\tCREATE TABLE IF NOT EXISTS threads (\n\t\t\t\tthread_id TEXT PRIMARY KEY,\n\t\t\t\tfile_path TEXT NOT NULL,\n\t\t\t\tfile_size INTEGER NOT NULL DEFAULT 0,\n\t\t\t\tfile_mtime INTEGER NOT NULL DEFAULT 0,\n\t\t\t\tcwd TEXT NOT NULL DEFAULT '',\n\t\t\t\tstatus TEXT NOT NULL DEFAULT 'pending',\n\t\t\t\terror_message TEXT,\n\t\t\t\tcreated_at TEXT NOT NULL DEFAULT (datetime('now')),\n\t\t\t\tupdated_at TEXT NOT NULL DEFAULT (datetime('now'))\n\t\t\t)\n\t\t`);\n\t\tthis.db.run(`\n\t\t\tCREATE TABLE IF NOT EXISTS stage1_outputs (\n\t\t\t\tthread_id TEXT PRIMARY KEY,\n\t\t\t\textraction_json TEXT NOT NULL,\n\t\t\t\tcreated_at TEXT NOT NULL DEFAULT (datetime('now')),\n\t\t\t\tFOREIGN KEY (thread_id) REFERENCES threads(thread_id) ON DELETE CASCADE\n\t\t\t)\n\t\t`);\n\t\tthis.db.run(`\n\t\t\tCREATE TABLE IF NOT EXISTS jobs (\n\t\t\t\tid TEXT PRIMARY KEY,\n\t\t\t\tphase TEXT NOT NULL,\n\t\t\t\tthread_id TEXT,\n\t\t\t\tstatus TEXT NOT NULL DEFAULT 'pending',\n\t\t\t\tworker_id TEXT,\n\t\t\t\townership_token TEXT,\n\t\t\t\tlease_expires_at TEXT,\n\t\t\t\terror_message TEXT,\n\t\t\t\tcreated_at TEXT NOT NULL DEFAULT (datetime('now')),\n\t\t\t\tupdated_at TEXT NOT NULL DEFAULT (datetime('now'))\n\t\t\t)\n\t\t`);\n\t\tthis.db.run(\"CREATE INDEX IF NOT EXISTS idx_jobs_phase_status ON jobs(phase, status)\");\n\t\tthis.db.run(\"CREATE INDEX IF NOT EXISTS idx_threads_status ON threads(status)\");\n\t\tthis.db.run(\"CREATE INDEX IF NOT EXISTS idx_threads_cwd ON threads(cwd)\");\n\t\tthis.persist();\n\t}\n\n\tprivate queryAll<T>(sql: string, params: unknown[] = []): T[] {\n\t\tconst stmt = this.db.prepare(sql);\n\t\tstmt.bind(params as (string | number | null | Uint8Array)[]);\n\t\tconst rows: T[] = [];\n\t\twhile (stmt.step()) {\n\t\t\trows.push(stmt.getAsObject() as T);\n\t\t}\n\t\tstmt.free();\n\t\treturn rows;\n\t}\n\n\tprivate queryOne<T>(sql: string, params: unknown[] = []): T | undefined {\n\t\tconst rows = this.queryAll<T>(sql, params);\n\t\treturn rows[0];\n\t}\n\n\t/**\n\t * Insert or update thread records. Skips threads whose file hasn't changed\n\t * (same size + mtime = watermark match).\n\t */\n\tupsertThreads(\n\t\tthreads: Array<{\n\t\t\tthreadId: string;\n\t\t\tfilePath: string;\n\t\t\tfileSize: number;\n\t\t\tfileMtime: number;\n\t\t\tcwd: string;\n\t\t}>,\n\t): { inserted: number; updated: number; skipped: number } {\n\t\tlet inserted = 0;\n\t\tlet updated = 0;\n\t\tlet skipped = 0;\n\n\t\tfor (const t of threads) {\n\t\t\tconst existing = this.queryOne<{ file_size: number; file_mtime: number; status: string }>(\n\t\t\t\t\"SELECT file_size, file_mtime, status FROM threads WHERE thread_id = ?\",\n\t\t\t\t[t.threadId],\n\t\t\t);\n\n\t\t\tif (!existing) {\n\t\t\t\tthis.db.run(\n\t\t\t\t\t\"INSERT INTO threads (thread_id, file_path, file_size, file_mtime, cwd, status) VALUES (?, ?, ?, ?, ?, 'pending')\",\n\t\t\t\t\t[t.threadId, t.filePath, t.fileSize, t.fileMtime, t.cwd],\n\t\t\t\t);\n\t\t\t\tthis.db.run(\n\t\t\t\t\t\"INSERT OR IGNORE INTO jobs (id, phase, thread_id, status) VALUES (?, 'stage1', ?, 'pending')\",\n\t\t\t\t\t[randomUUID(), t.threadId],\n\t\t\t\t);\n\t\t\t\tinserted++;\n\t\t\t} else if (existing.file_size !== t.fileSize || existing.file_mtime !== t.fileMtime) {\n\t\t\t\tthis.db.run(\n\t\t\t\t\t\"UPDATE threads SET file_path = ?, file_size = ?, file_mtime = ?, cwd = ?, status = 'pending', updated_at = datetime('now') WHERE thread_id = ?\",\n\t\t\t\t\t[t.filePath, t.fileSize, t.fileMtime, t.cwd, t.threadId],\n\t\t\t\t);\n\t\t\t\tif (existing.status === \"done\" || existing.status === \"error\") {\n\t\t\t\t\tthis.db.run(\n\t\t\t\t\t\t\"INSERT OR IGNORE INTO jobs (id, phase, thread_id, status) VALUES (?, 'stage1', ?, 'pending')\",\n\t\t\t\t\t\t[randomUUID(), t.threadId],\n\t\t\t\t\t);\n\t\t\t\t}\n\t\t\t\tupdated++;\n\t\t\t} else {\n\t\t\t\tskipped++;\n\t\t\t}\n\t\t}\n\n\t\tthis.schedulePersist();\n\t\treturn { inserted, updated, skipped };\n\t}\n\n\t/**\n\t * Claim up to `limit` stage1 jobs for the given worker.\n\t * Uses lease-based ownership with an ownership_token UUID.\n\t */\n\tclaimStage1Jobs(\n\t\tworkerId: string,\n\t\tlimit: number,\n\t\tleaseSeconds: number,\n\t): Array<{ jobId: string; threadId: string; ownershipToken: string }> {\n\t\tconst token = randomUUID();\n\t\tconst expiresAt = new Date(Date.now() + leaseSeconds * 1000).toISOString();\n\n\t\tthis.db.run(\n\t\t\t`UPDATE jobs SET\n\t\t\t\tstatus = 'claimed',\n\t\t\t\tworker_id = ?,\n\t\t\t\townership_token = ?,\n\t\t\t\tlease_expires_at = ?,\n\t\t\t\tupdated_at = datetime('now')\n\t\t\tWHERE id IN (\n\t\t\t\tSELECT id FROM jobs\n\t\t\t\tWHERE phase = 'stage1'\n\t\t\t\t\tAND (status = 'pending' OR (status = 'claimed' AND lease_expires_at < datetime('now')))\n\t\t\t\tLIMIT ?\n\t\t\t)`,\n\t\t\t[workerId, token, expiresAt, limit],\n\t\t);\n\n\t\tconst rows = this.queryAll<{ id: string; thread_id: string }>(\n\t\t\t\"SELECT id, thread_id FROM jobs WHERE ownership_token = ? AND status = 'claimed'\",\n\t\t\t[token],\n\t\t);\n\n\t\tthis.schedulePersist();\n\n\t\treturn rows.map((r) => ({\n\t\t\tjobId: r.id,\n\t\t\tthreadId: r.thread_id,\n\t\t\townershipToken: token,\n\t\t}));\n\t}\n\n\t/**\n\t * Mark a stage1 job as complete and store the extraction output.\n\t */\n\tcompleteStage1Job(threadId: string, output: string): void {\n\t\tthis.db.run(\n\t\t\t\"UPDATE jobs SET status = 'done', updated_at = datetime('now') WHERE thread_id = ? AND phase = 'stage1' AND status = 'claimed'\",\n\t\t\t[threadId],\n\t\t);\n\t\tthis.db.run(\n\t\t\t\"INSERT OR REPLACE INTO stage1_outputs (thread_id, extraction_json, created_at) VALUES (?, ?, datetime('now'))\",\n\t\t\t[threadId, output],\n\t\t);\n\t\tthis.db.run(\n\t\t\t\"UPDATE threads SET status = 'done', updated_at = datetime('now') WHERE thread_id = ?\",\n\t\t\t[threadId],\n\t\t);\n\t\tthis.schedulePersist();\n\t}\n\n\t/**\n\t * Mark a stage1 job as errored.\n\t */\n\tfailStage1Job(threadId: string, errorMessage: string): void {\n\t\tthis.db.run(\n\t\t\t\"UPDATE jobs SET status = 'error', error_message = ?, updated_at = datetime('now') WHERE thread_id = ? AND phase = 'stage1' AND status = 'claimed'\",\n\t\t\t[errorMessage, threadId],\n\t\t);\n\t\tthis.db.run(\n\t\t\t\"UPDATE threads SET status = 'error', error_message = ?, updated_at = datetime('now') WHERE thread_id = ?\",\n\t\t\t[errorMessage, threadId],\n\t\t);\n\t\tthis.schedulePersist();\n\t}\n\n\t/**\n\t * Try to claim the global phase 2 consolidation job.\n\t * Only one worker can hold this at a time.\n\t */\n\ttryClaimGlobalPhase2Job(\n\t\tworkerId: string,\n\t\tleaseSeconds: number,\n\t): { jobId: string; ownershipToken: string } | null {\n\t\tconst token = randomUUID();\n\t\tconst expiresAt = new Date(Date.now() + leaseSeconds * 1000).toISOString();\n\n\t\tconst pendingStage1 = this.queryOne<{ cnt: number }>(\n\t\t\t\"SELECT COUNT(*) as cnt FROM jobs WHERE phase = 'stage1' AND status IN ('pending', 'claimed')\",\n\t\t);\n\n\t\tif (pendingStage1 && pendingStage1.cnt > 0) {\n\t\t\treturn null;\n\t\t}\n\n\t\tconst existingPhase2 = this.queryOne<{ id: string }>(\n\t\t\t\"SELECT id FROM jobs WHERE phase = 'stage2' AND status = 'claimed' AND lease_expires_at > datetime('now')\",\n\t\t);\n\n\t\tif (existingPhase2) {\n\t\t\treturn null;\n\t\t}\n\n\t\tconst outputCount = this.queryOne<{ cnt: number }>(\n\t\t\t\"SELECT COUNT(*) as cnt FROM stage1_outputs\",\n\t\t);\n\n\t\tif (!outputCount || outputCount.cnt === 0) {\n\t\t\treturn null;\n\t\t}\n\n\t\tconst jobId = randomUUID();\n\t\tthis.db.run(\n\t\t\t\"INSERT INTO jobs (id, phase, status, worker_id, ownership_token, lease_expires_at) VALUES (?, 'stage2', 'claimed', ?, ?, ?)\",\n\t\t\t[jobId, workerId, token, expiresAt],\n\t\t);\n\n\t\tthis.schedulePersist();\n\t\treturn { jobId, ownershipToken: token };\n\t}\n\n\t/**\n\t * Complete the phase 2 consolidation job.\n\t */\n\tcompletePhase2Job(jobId: string): void {\n\t\tthis.db.run(\n\t\t\t\"UPDATE jobs SET status = 'done', updated_at = datetime('now') WHERE id = ? AND phase = 'stage2'\",\n\t\t\t[jobId],\n\t\t);\n\t\tthis.schedulePersist();\n\t}\n\n\t/**\n\t * Get all stage1 extraction outputs.\n\t */\n\tgetStage1Outputs(): Array<{ threadId: string; extractionJson: string }> {\n\t\tconst rows = this.queryAll<{ thread_id: string; extraction_json: string }>(\n\t\t\t\"SELECT thread_id, extraction_json FROM stage1_outputs\",\n\t\t);\n\n\t\treturn rows.map((r) => ({\n\t\t\tthreadId: r.thread_id,\n\t\t\textractionJson: r.extraction_json,\n\t\t}));\n\t}\n\n\t/**\n\t * Get all stage1 outputs for a specific cwd.\n\t */\n\tgetStage1OutputsForCwd(cwd: string): Array<{ threadId: string; extractionJson: string }> {\n\t\tconst rows = this.queryAll<{ thread_id: string; extraction_json: string }>(\n\t\t\t`SELECT s.thread_id, s.extraction_json FROM stage1_outputs s\n\t\t\tINNER JOIN threads t ON t.thread_id = s.thread_id\n\t\t\tWHERE t.cwd = ?`,\n\t\t\t[cwd],\n\t\t);\n\n\t\treturn rows.map((r) => ({\n\t\t\tthreadId: r.thread_id,\n\t\t\textractionJson: r.extraction_json,\n\t\t}));\n\t}\n\n\t/**\n\t * Get thread info by ID.\n\t */\n\tgetThread(threadId: string): ThreadRow | undefined {\n\t\treturn this.queryOne<ThreadRow>(\n\t\t\t\"SELECT * FROM threads WHERE thread_id = ?\",\n\t\t\t[threadId],\n\t\t);\n\t}\n\n\t/**\n\t * Get pipeline statistics.\n\t */\n\tgetStats(): {\n\t\ttotalThreads: number;\n\t\tpendingThreads: number;\n\t\tdoneThreads: number;\n\t\terrorThreads: number;\n\t\ttotalStage1Outputs: number;\n\t\tpendingStage1Jobs: number;\n\t} {\n\t\tconst threads = this.queryOne<{ total: number; pending: number; done: number; errors: number }>(`\n\t\t\tSELECT\n\t\t\t\tCOUNT(*) as total,\n\t\t\t\tSUM(CASE WHEN status = 'pending' THEN 1 ELSE 0 END) as pending,\n\t\t\t\tSUM(CASE WHEN status = 'done' THEN 1 ELSE 0 END) as done,\n\t\t\t\tSUM(CASE WHEN status = 'error' THEN 1 ELSE 0 END) as errors\n\t\t\tFROM threads\n\t\t`)!;\n\n\t\tconst outputs = this.queryOne<{ cnt: number }>(\n\t\t\t\"SELECT COUNT(*) as cnt FROM stage1_outputs\",\n\t\t)!;\n\n\t\tconst pendingJobs = this.queryOne<{ cnt: number }>(\n\t\t\t\"SELECT COUNT(*) as cnt FROM jobs WHERE phase = 'stage1' AND status IN ('pending', 'claimed')\",\n\t\t)!;\n\n\t\treturn {\n\t\t\ttotalThreads: threads.total,\n\t\t\tpendingThreads: threads.pending,\n\t\t\tdoneThreads: threads.done,\n\t\t\terrorThreads: threads.errors,\n\t\t\ttotalStage1Outputs: outputs.cnt,\n\t\t\tpendingStage1Jobs: pendingJobs.cnt,\n\t\t};\n\t}\n\n\t/**\n\t * Clear all data (for /memory clear).\n\t */\n\tclearAll(): void {\n\t\tthis.db.run(\"DELETE FROM stage1_outputs\");\n\t\tthis.db.run(\"DELETE FROM jobs\");\n\t\tthis.db.run(\"DELETE FROM threads\");\n\t\tthis.schedulePersist();\n\t}\n\n\t/**\n\t * Clear data for a specific cwd (for /memory clear in project scope).\n\t */\n\tclearForCwd(cwd: string): void {\n\t\tthis.db.run(\n\t\t\t\"DELETE FROM stage1_outputs WHERE thread_id IN (SELECT thread_id FROM threads WHERE cwd = ?)\",\n\t\t\t[cwd],\n\t\t);\n\t\tthis.db.run(\n\t\t\t\"DELETE FROM jobs WHERE thread_id IN (SELECT thread_id FROM threads WHERE cwd = ?)\",\n\t\t\t[cwd],\n\t\t);\n\t\tthis.db.run(\"DELETE FROM threads WHERE cwd = ?\", [cwd]);\n\t\tthis.schedulePersist();\n\t}\n\n\t/**\n\t * Reset all threads to pending (for /memory rebuild).\n\t */\n\tresetAllForCwd(cwd: string): void {\n\t\tthis.db.run(\n\t\t\t\"DELETE FROM stage1_outputs WHERE thread_id IN (SELECT thread_id FROM threads WHERE cwd = ?)\",\n\t\t\t[cwd],\n\t\t);\n\t\tthis.db.run(\n\t\t\t\"DELETE FROM jobs WHERE thread_id IN (SELECT thread_id FROM threads WHERE cwd = ?)\",\n\t\t\t[cwd],\n\t\t);\n\t\tthis.db.run(\n\t\t\t\"UPDATE threads SET status = 'pending', updated_at = datetime('now') WHERE cwd = ?\",\n\t\t\t[cwd],\n\t\t);\n\n\t\tconst threads = this.queryAll<{ thread_id: string }>(\n\t\t\t\"SELECT thread_id FROM threads WHERE cwd = ?\",\n\t\t\t[cwd],\n\t\t);\n\n\t\tfor (const t of threads) {\n\t\t\tthis.db.run(\n\t\t\t\t\"INSERT INTO jobs (id, phase, thread_id, status) VALUES (?, 'stage1', ?, 'pending')\",\n\t\t\t\t[randomUUID(), t.thread_id],\n\t\t\t);\n\t\t}\n\t\tthis.schedulePersist();\n\t}\n\n\tclose(): void {\n\t\tif (this.persistTimer) {\n\t\t\tclearTimeout(this.persistTimer);\n\t\t\tthis.persistTimer = null;\n\t\t}\n\t\tthis.persist();\n\t\tthis.db.close();\n\t}\n}\n"]}
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* SQLite storage for the memory extraction pipeline.\n *\n * Tables:\n * - threads: tracks session files and their processing state\n * - stage1_outputs: stores per-thread extraction results\n * - jobs: lease-based job queue for pipeline phases\n */\n\nimport initSqlJs, { type Database as SqlJsDatabase } from \"sql.js\";\nimport { randomUUID } from \"crypto\";\nimport { existsSync, mkdirSync, readFileSync } from \"fs\";\nimport { dirname } from \"path\";\nimport { atomicWriteDbSnapshotSync } from \"../../../core/db-snapshot.js\";\n\nexport interface ThreadRow {\n\tthread_id: string;\n\tfile_path: string;\n\tfile_size: number;\n\tfile_mtime: number;\n\tcwd: string;\n\tstatus: \"pending\" | \"processing\" | \"done\" | \"error\";\n\terror_message: string | null;\n\tcreated_at: string;\n\tupdated_at: string;\n}\n\nexport interface Stage1OutputRow {\n\tthread_id: string;\n\textraction_json: string;\n\tcreated_at: string;\n}\n\nexport interface JobRow {\n\tid: string;\n\tphase: \"stage1\" | \"stage2\";\n\tthread_id: string | null;\n\tstatus: \"pending\" | \"claimed\" | \"done\" | \"error\";\n\tworker_id: string | null;\n\townership_token: string | null;\n\tlease_expires_at: string | null;\n\terror_message: string | null;\n\tcreated_at: string;\n\tupdated_at: string;\n}\n\nexport class MemoryStorage {\n\tprivate db: SqlJsDatabase;\n\tprivate dbPath: string;\n\tprivate persistTimer: ReturnType<typeof setTimeout> | null = null;\n\n\tprivate constructor(db: SqlJsDatabase, dbPath: string) {\n\t\tthis.db = db;\n\t\tthis.dbPath = dbPath;\n\t}\n\n\tstatic async create(dbPath: string): Promise<MemoryStorage> {\n\t\tconst dir = dirname(dbPath);\n\t\tif (!existsSync(dir)) {\n\t\t\tmkdirSync(dir, { recursive: true });\n\t\t}\n\n\t\tconst SQL = await initSqlJs();\n\t\tconst buffer = existsSync(dbPath) ? readFileSync(dbPath) : undefined;\n\t\tconst db = buffer ? new SQL.Database(buffer) : new SQL.Database();\n\n\t\tdb.run(\"PRAGMA journal_mode = WAL\");\n\t\tdb.run(\"PRAGMA synchronous = NORMAL\");\n\t\tdb.run(\"PRAGMA busy_timeout = 5000\");\n\n\t\tconst storage = new MemoryStorage(db, dbPath);\n\t\tstorage.initSchema();\n\t\treturn storage;\n\t}\n\n\tprivate persist(): void {\n\t\tconst data = this.db.export();\n\t\tatomicWriteDbSnapshotSync(this.dbPath, data);\n\t}\n\n\tprivate schedulePersist(): void {\n\t\tif (this.persistTimer) {\n\t\t\tclearTimeout(this.persistTimer);\n\t\t}\n\t\tthis.persistTimer = setTimeout(() => {\n\t\t\tthis.persistTimer = null;\n\t\t\tthis.persist();\n\t\t}, 500);\n\t}\n\n\tprivate initSchema(): void {\n\t\tthis.db.run(`\n\t\t\tCREATE TABLE IF NOT EXISTS threads (\n\t\t\t\tthread_id TEXT PRIMARY KEY,\n\t\t\t\tfile_path TEXT NOT NULL,\n\t\t\t\tfile_size INTEGER NOT NULL DEFAULT 0,\n\t\t\t\tfile_mtime INTEGER NOT NULL DEFAULT 0,\n\t\t\t\tcwd TEXT NOT NULL DEFAULT '',\n\t\t\t\tstatus TEXT NOT NULL DEFAULT 'pending',\n\t\t\t\terror_message TEXT,\n\t\t\t\tcreated_at TEXT NOT NULL DEFAULT (datetime('now')),\n\t\t\t\tupdated_at TEXT NOT NULL DEFAULT (datetime('now'))\n\t\t\t)\n\t\t`);\n\t\tthis.db.run(`\n\t\t\tCREATE TABLE IF NOT EXISTS stage1_outputs (\n\t\t\t\tthread_id TEXT PRIMARY KEY,\n\t\t\t\textraction_json TEXT NOT NULL,\n\t\t\t\tcreated_at TEXT NOT NULL DEFAULT (datetime('now')),\n\t\t\t\tFOREIGN KEY (thread_id) REFERENCES threads(thread_id) ON DELETE CASCADE\n\t\t\t)\n\t\t`);\n\t\tthis.db.run(`\n\t\t\tCREATE TABLE IF NOT EXISTS jobs (\n\t\t\t\tid TEXT PRIMARY KEY,\n\t\t\t\tphase TEXT NOT NULL,\n\t\t\t\tthread_id TEXT,\n\t\t\t\tstatus TEXT NOT NULL DEFAULT 'pending',\n\t\t\t\tworker_id TEXT,\n\t\t\t\townership_token TEXT,\n\t\t\t\tlease_expires_at TEXT,\n\t\t\t\terror_message TEXT,\n\t\t\t\tcreated_at TEXT NOT NULL DEFAULT (datetime('now')),\n\t\t\t\tupdated_at TEXT NOT NULL DEFAULT (datetime('now'))\n\t\t\t)\n\t\t`);\n\t\tthis.db.run(\"CREATE INDEX IF NOT EXISTS idx_jobs_phase_status ON jobs(phase, status)\");\n\t\tthis.db.run(\"CREATE INDEX IF NOT EXISTS idx_threads_status ON threads(status)\");\n\t\tthis.db.run(\"CREATE INDEX IF NOT EXISTS idx_threads_cwd ON threads(cwd)\");\n\t\tthis.persist();\n\t}\n\n\tprivate queryAll<T>(sql: string, params: unknown[] = []): T[] {\n\t\tconst stmt = this.db.prepare(sql);\n\t\tstmt.bind(params as (string | number | null | Uint8Array)[]);\n\t\tconst rows: T[] = [];\n\t\twhile (stmt.step()) {\n\t\t\trows.push(stmt.getAsObject() as T);\n\t\t}\n\t\tstmt.free();\n\t\treturn rows;\n\t}\n\n\tprivate queryOne<T>(sql: string, params: unknown[] = []): T | undefined {\n\t\tconst rows = this.queryAll<T>(sql, params);\n\t\treturn rows[0];\n\t}\n\n\t/**\n\t * Insert or update thread records. Skips threads whose file hasn't changed\n\t * (same size + mtime = watermark match).\n\t */\n\tupsertThreads(\n\t\tthreads: Array<{\n\t\t\tthreadId: string;\n\t\t\tfilePath: string;\n\t\t\tfileSize: number;\n\t\t\tfileMtime: number;\n\t\t\tcwd: string;\n\t\t}>,\n\t): { inserted: number; updated: number; skipped: number } {\n\t\tlet inserted = 0;\n\t\tlet updated = 0;\n\t\tlet skipped = 0;\n\n\t\tfor (const t of threads) {\n\t\t\tconst existing = this.queryOne<{ file_size: number; file_mtime: number; status: string }>(\n\t\t\t\t\"SELECT file_size, file_mtime, status FROM threads WHERE thread_id = ?\",\n\t\t\t\t[t.threadId],\n\t\t\t);\n\n\t\t\tif (!existing) {\n\t\t\t\tthis.db.run(\n\t\t\t\t\t\"INSERT INTO threads (thread_id, file_path, file_size, file_mtime, cwd, status) VALUES (?, ?, ?, ?, ?, 'pending')\",\n\t\t\t\t\t[t.threadId, t.filePath, t.fileSize, t.fileMtime, t.cwd],\n\t\t\t\t);\n\t\t\t\tthis.db.run(\n\t\t\t\t\t\"INSERT OR IGNORE INTO jobs (id, phase, thread_id, status) VALUES (?, 'stage1', ?, 'pending')\",\n\t\t\t\t\t[randomUUID(), t.threadId],\n\t\t\t\t);\n\t\t\t\tinserted++;\n\t\t\t} else if (existing.file_size !== t.fileSize || existing.file_mtime !== t.fileMtime) {\n\t\t\t\tthis.db.run(\n\t\t\t\t\t\"UPDATE threads SET file_path = ?, file_size = ?, file_mtime = ?, cwd = ?, status = 'pending', updated_at = datetime('now') WHERE thread_id = ?\",\n\t\t\t\t\t[t.filePath, t.fileSize, t.fileMtime, t.cwd, t.threadId],\n\t\t\t\t);\n\t\t\t\tif (existing.status === \"done\" || existing.status === \"error\") {\n\t\t\t\t\tthis.db.run(\n\t\t\t\t\t\t\"INSERT OR IGNORE INTO jobs (id, phase, thread_id, status) VALUES (?, 'stage1', ?, 'pending')\",\n\t\t\t\t\t\t[randomUUID(), t.threadId],\n\t\t\t\t\t);\n\t\t\t\t}\n\t\t\t\tupdated++;\n\t\t\t} else {\n\t\t\t\tskipped++;\n\t\t\t}\n\t\t}\n\n\t\tthis.schedulePersist();\n\t\treturn { inserted, updated, skipped };\n\t}\n\n\t/**\n\t * Claim up to `limit` stage1 jobs for the given worker.\n\t * Uses lease-based ownership with an ownership_token UUID.\n\t */\n\tclaimStage1Jobs(\n\t\tworkerId: string,\n\t\tlimit: number,\n\t\tleaseSeconds: number,\n\t): Array<{ jobId: string; threadId: string; ownershipToken: string }> {\n\t\tconst token = randomUUID();\n\t\tconst expiresAt = new Date(Date.now() + leaseSeconds * 1000).toISOString();\n\n\t\tthis.db.run(\n\t\t\t`UPDATE jobs SET\n\t\t\t\tstatus = 'claimed',\n\t\t\t\tworker_id = ?,\n\t\t\t\townership_token = ?,\n\t\t\t\tlease_expires_at = ?,\n\t\t\t\tupdated_at = datetime('now')\n\t\t\tWHERE id IN (\n\t\t\t\tSELECT id FROM jobs\n\t\t\t\tWHERE phase = 'stage1'\n\t\t\t\t\tAND (status = 'pending' OR (status = 'claimed' AND lease_expires_at < datetime('now')))\n\t\t\t\tLIMIT ?\n\t\t\t)`,\n\t\t\t[workerId, token, expiresAt, limit],\n\t\t);\n\n\t\tconst rows = this.queryAll<{ id: string; thread_id: string }>(\n\t\t\t\"SELECT id, thread_id FROM jobs WHERE ownership_token = ? AND status = 'claimed'\",\n\t\t\t[token],\n\t\t);\n\n\t\tthis.schedulePersist();\n\n\t\treturn rows.map((r) => ({\n\t\t\tjobId: r.id,\n\t\t\tthreadId: r.thread_id,\n\t\t\townershipToken: token,\n\t\t}));\n\t}\n\n\t/**\n\t * Mark a stage1 job as complete and store the extraction output.\n\t */\n\tcompleteStage1Job(threadId: string, output: string): void {\n\t\tthis.db.run(\n\t\t\t\"UPDATE jobs SET status = 'done', updated_at = datetime('now') WHERE thread_id = ? AND phase = 'stage1' AND status = 'claimed'\",\n\t\t\t[threadId],\n\t\t);\n\t\tthis.db.run(\n\t\t\t\"INSERT OR REPLACE INTO stage1_outputs (thread_id, extraction_json, created_at) VALUES (?, ?, datetime('now'))\",\n\t\t\t[threadId, output],\n\t\t);\n\t\tthis.db.run(\n\t\t\t\"UPDATE threads SET status = 'done', updated_at = datetime('now') WHERE thread_id = ?\",\n\t\t\t[threadId],\n\t\t);\n\t\tthis.schedulePersist();\n\t}\n\n\t/**\n\t * Mark a stage1 job as errored.\n\t */\n\tfailStage1Job(threadId: string, errorMessage: string): void {\n\t\tthis.db.run(\n\t\t\t\"UPDATE jobs SET status = 'error', error_message = ?, updated_at = datetime('now') WHERE thread_id = ? AND phase = 'stage1' AND status = 'claimed'\",\n\t\t\t[errorMessage, threadId],\n\t\t);\n\t\tthis.db.run(\n\t\t\t\"UPDATE threads SET status = 'error', error_message = ?, updated_at = datetime('now') WHERE thread_id = ?\",\n\t\t\t[errorMessage, threadId],\n\t\t);\n\t\tthis.schedulePersist();\n\t}\n\n\t/**\n\t * Try to claim the global phase 2 consolidation job.\n\t * Only one worker can hold this at a time.\n\t */\n\ttryClaimGlobalPhase2Job(\n\t\tworkerId: string,\n\t\tleaseSeconds: number,\n\t): { jobId: string; ownershipToken: string } | null {\n\t\tconst token = randomUUID();\n\t\tconst expiresAt = new Date(Date.now() + leaseSeconds * 1000).toISOString();\n\n\t\tconst pendingStage1 = this.queryOne<{ cnt: number }>(\n\t\t\t\"SELECT COUNT(*) as cnt FROM jobs WHERE phase = 'stage1' AND status IN ('pending', 'claimed')\",\n\t\t);\n\n\t\tif (pendingStage1 && pendingStage1.cnt > 0) {\n\t\t\treturn null;\n\t\t}\n\n\t\tconst existingPhase2 = this.queryOne<{ id: string }>(\n\t\t\t\"SELECT id FROM jobs WHERE phase = 'stage2' AND status = 'claimed' AND lease_expires_at > datetime('now')\",\n\t\t);\n\n\t\tif (existingPhase2) {\n\t\t\treturn null;\n\t\t}\n\n\t\tconst outputCount = this.queryOne<{ cnt: number }>(\n\t\t\t\"SELECT COUNT(*) as cnt FROM stage1_outputs\",\n\t\t);\n\n\t\tif (!outputCount || outputCount.cnt === 0) {\n\t\t\treturn null;\n\t\t}\n\n\t\tconst jobId = randomUUID();\n\t\tthis.db.run(\n\t\t\t\"INSERT INTO jobs (id, phase, status, worker_id, ownership_token, lease_expires_at) VALUES (?, 'stage2', 'claimed', ?, ?, ?)\",\n\t\t\t[jobId, workerId, token, expiresAt],\n\t\t);\n\n\t\tthis.schedulePersist();\n\t\treturn { jobId, ownershipToken: token };\n\t}\n\n\t/**\n\t * Complete the phase 2 consolidation job.\n\t */\n\tcompletePhase2Job(jobId: string): void {\n\t\tthis.db.run(\n\t\t\t\"UPDATE jobs SET status = 'done', updated_at = datetime('now') WHERE id = ? AND phase = 'stage2'\",\n\t\t\t[jobId],\n\t\t);\n\t\tthis.schedulePersist();\n\t}\n\n\t/**\n\t * Get all stage1 extraction outputs.\n\t */\n\tgetStage1Outputs(): Array<{ threadId: string; extractionJson: string }> {\n\t\tconst rows = this.queryAll<{ thread_id: string; extraction_json: string }>(\n\t\t\t\"SELECT thread_id, extraction_json FROM stage1_outputs\",\n\t\t);\n\n\t\treturn rows.map((r) => ({\n\t\t\tthreadId: r.thread_id,\n\t\t\textractionJson: r.extraction_json,\n\t\t}));\n\t}\n\n\t/**\n\t * Get all stage1 outputs for a specific cwd.\n\t */\n\tgetStage1OutputsForCwd(cwd: string): Array<{ threadId: string; extractionJson: string }> {\n\t\tconst rows = this.queryAll<{ thread_id: string; extraction_json: string }>(\n\t\t\t`SELECT s.thread_id, s.extraction_json FROM stage1_outputs s\n\t\t\tINNER JOIN threads t ON t.thread_id = s.thread_id\n\t\t\tWHERE t.cwd = ?`,\n\t\t\t[cwd],\n\t\t);\n\n\t\treturn rows.map((r) => ({\n\t\t\tthreadId: r.thread_id,\n\t\t\textractionJson: r.extraction_json,\n\t\t}));\n\t}\n\n\t/**\n\t * Get thread info by ID.\n\t */\n\tgetThread(threadId: string): ThreadRow | undefined {\n\t\treturn this.queryOne<ThreadRow>(\n\t\t\t\"SELECT * FROM threads WHERE thread_id = ?\",\n\t\t\t[threadId],\n\t\t);\n\t}\n\n\t/**\n\t * Get pipeline statistics.\n\t */\n\tgetStats(): {\n\t\ttotalThreads: number;\n\t\tpendingThreads: number;\n\t\tdoneThreads: number;\n\t\terrorThreads: number;\n\t\ttotalStage1Outputs: number;\n\t\tpendingStage1Jobs: number;\n\t} {\n\t\tconst threads = this.queryOne<{ total: number; pending: number; done: number; errors: number }>(`\n\t\t\tSELECT\n\t\t\t\tCOUNT(*) as total,\n\t\t\t\tSUM(CASE WHEN status = 'pending' THEN 1 ELSE 0 END) as pending,\n\t\t\t\tSUM(CASE WHEN status = 'done' THEN 1 ELSE 0 END) as done,\n\t\t\t\tSUM(CASE WHEN status = 'error' THEN 1 ELSE 0 END) as errors\n\t\t\tFROM threads\n\t\t`)!;\n\n\t\tconst outputs = this.queryOne<{ cnt: number }>(\n\t\t\t\"SELECT COUNT(*) as cnt FROM stage1_outputs\",\n\t\t)!;\n\n\t\tconst pendingJobs = this.queryOne<{ cnt: number }>(\n\t\t\t\"SELECT COUNT(*) as cnt FROM jobs WHERE phase = 'stage1' AND status IN ('pending', 'claimed')\",\n\t\t)!;\n\n\t\treturn {\n\t\t\ttotalThreads: threads.total,\n\t\t\tpendingThreads: threads.pending,\n\t\t\tdoneThreads: threads.done,\n\t\t\terrorThreads: threads.errors,\n\t\t\ttotalStage1Outputs: outputs.cnt,\n\t\t\tpendingStage1Jobs: pendingJobs.cnt,\n\t\t};\n\t}\n\n\t/**\n\t * Clear all data (for /memory clear).\n\t */\n\tclearAll(): void {\n\t\tthis.db.run(\"DELETE FROM stage1_outputs\");\n\t\tthis.db.run(\"DELETE FROM jobs\");\n\t\tthis.db.run(\"DELETE FROM threads\");\n\t\tthis.schedulePersist();\n\t}\n\n\t/**\n\t * Clear data for a specific cwd (for /memory clear in project scope).\n\t */\n\tclearForCwd(cwd: string): void {\n\t\tthis.db.run(\n\t\t\t\"DELETE FROM stage1_outputs WHERE thread_id IN (SELECT thread_id FROM threads WHERE cwd = ?)\",\n\t\t\t[cwd],\n\t\t);\n\t\tthis.db.run(\n\t\t\t\"DELETE FROM jobs WHERE thread_id IN (SELECT thread_id FROM threads WHERE cwd = ?)\",\n\t\t\t[cwd],\n\t\t);\n\t\tthis.db.run(\"DELETE FROM threads WHERE cwd = ?\", [cwd]);\n\t\tthis.schedulePersist();\n\t}\n\n\t/**\n\t * Reset all threads to pending (for /memory rebuild).\n\t */\n\tresetAllForCwd(cwd: string): void {\n\t\tthis.db.run(\n\t\t\t\"DELETE FROM stage1_outputs WHERE thread_id IN (SELECT thread_id FROM threads WHERE cwd = ?)\",\n\t\t\t[cwd],\n\t\t);\n\t\tthis.db.run(\n\t\t\t\"DELETE FROM jobs WHERE thread_id IN (SELECT thread_id FROM threads WHERE cwd = ?)\",\n\t\t\t[cwd],\n\t\t);\n\t\tthis.db.run(\n\t\t\t\"UPDATE threads SET status = 'pending', updated_at = datetime('now') WHERE cwd = ?\",\n\t\t\t[cwd],\n\t\t);\n\n\t\tconst threads = this.queryAll<{ thread_id: string }>(\n\t\t\t\"SELECT thread_id FROM threads WHERE cwd = ?\",\n\t\t\t[cwd],\n\t\t);\n\n\t\tfor (const t of threads) {\n\t\t\tthis.db.run(\n\t\t\t\t\"INSERT INTO jobs (id, phase, thread_id, status) VALUES (?, 'stage1', ?, 'pending')\",\n\t\t\t\t[randomUUID(), t.thread_id],\n\t\t\t);\n\t\t}\n\t\tthis.schedulePersist();\n\t}\n\n\tclose(): void {\n\t\tif (this.persistTimer) {\n\t\t\tclearTimeout(this.persistTimer);\n\t\t\tthis.persistTimer = null;\n\t\t}\n\t\tthis.persist();\n\t\tthis.db.close();\n\t}\n}\n"]}

package/packages/pi-coding-agent/src/core/chat-controller-ordering.test.ts

@@ -1053,6 +1053,42 @@ test("chat-controller rolls up only contiguous low-signal tool runs on message_e
 	assert.equal(host.chatContainer._prevRender, null, "summary reposition must invalidate the chat container render cache");
 });
 
+test("chat-controller rolls up low-signal direct tool execution events on agent_end", async () => {
+	(globalThis as any)[Symbol.for("@gsd/pi-coding-agent:theme")] = {
+		fg: (_key: string, text: string) => text,
+		bg: (_key: string, text: string) => text,
+		bold: (text: string) => text,
+		italic: (text: string) => text,
+		truncate: (text: string) => text,
+	};
+
+	const host = createHost();
+	host.getMarkdownThemeWithSettings = () => ({});
+
+	for (const toolCallId of ["bash-1", "bash-2", "bash-3"]) {
+		await handleAgentEvent(host, {
+			type: "tool_execution_start",
+			toolCallId,
+			toolName: "bash",
+			args: { command: "true" },
+		} as any);
+		await handleAgentEvent(host, {
+			type: "tool_execution_end",
+			toolCallId,
+			isError: false,
+			result: { content: [], details: {} },
+		} as any);
+	}
+
+	assert.equal(host.chatContainer.children.length, 3, "direct tool events render as individual rows while running");
+
+	await handleAgentEvent(host, { type: "agent_end" } as any);
+
+	assert.equal(host.chatContainer.children.length, 1, "direct low-signal tool rows should roll up on agent_end");
+	assert.equal(host.chatContainer.children[0]?.constructor?.name, "ToolPhaseSummaryComponent");
+	assert.match(host.chatContainer.children[0].render(120).join("\n"), /Setup \/ shell 3 actions/);
+});
+
 // Regression test for issue #4144: interleaved text/tool content must render in content[] index order.
 // Stream: [text "A", toolCall T1, text "B", toolCall T2, text "C"]
 // Expected chatContainer order: textRun(A), toolExec(T1), textRun(B), toolExec(T2), textRun(C)

package/packages/pi-coding-agent/src/core/db-snapshot.test.ts

@@ -0,0 +1,32 @@
+import assert from "node:assert/strict";
+import { describe, it, afterEach } from "node:test";
+import { existsSync, mkdtempSync, readFileSync, readdirSync, rmSync } from "node:fs";
+import { join } from "node:path";
+import { tmpdir } from "node:os";
+
+import { atomicWriteDbSnapshotSync } from "./db-snapshot.js";
+
+describe("atomicWriteDbSnapshotSync", () => {
+	let dir: string;
+
+	afterEach(() => {
+		if (dir) {
+			rmSync(dir, { recursive: true, force: true });
+		}
+	});
+
+	it("writes the full snapshot and leaves no temp file after success", () => {
+		dir = mkdtempSync(join(tmpdir(), "gsd-db-snapshot-test-"));
+		const dbPath = join(dir, "agent.db");
+		const snapshot = new Uint8Array([0x53, 0x51, 0x4c, 0x69, 0x74, 0x65]);
+
+		atomicWriteDbSnapshotSync(dbPath, snapshot);
+
+		assert.deepEqual(readFileSync(dbPath), Buffer.from(snapshot));
+		assert.equal(existsSync(`${dbPath}.tmp`), false);
+		assert.deepEqual(
+			readdirSync(dir).filter((entry) => entry.includes("agent.db") && entry.includes(".tmp")),
+			[],
+		);
+	});
+});

package/packages/pi-coding-agent/src/core/db-snapshot.ts

@@ -0,0 +1,66 @@
+import { randomUUID } from "node:crypto";
+import { closeSync, fsyncSync, openSync, renameSync, unlinkSync, writeFileSync } from "node:fs";
+import { basename, dirname, join } from "node:path";
+
+export type DbSnapshot = Buffer | Uint8Array;
+
+function closeBestEffort(fd: number | null): void {
+	if (fd === null) return;
+	try {
+		closeSync(fd);
+	} catch {
+		// Preserve the original write/rename failure when cleaning up.
+	}
+}
+
+function fsyncDirectoryBestEffort(dirPath: string): void {
+	let fd: number | null = null;
+	try {
+		fd = openSync(dirPath, "r");
+		fsyncSync(fd);
+	} catch {
+		// Directory fsync is unsupported on some platforms/filesystems.
+	} finally {
+		closeBestEffort(fd);
+	}
+}
+
+/**
+ * Persist a sql.js database export without exposing callers to a torn live file.
+ *
+ * The snapshot is written to a unique temp file in the same directory, flushed,
+ * then renamed over the target. A hard kill during the temp write leaves the
+ * previous target intact; after rename, readers see the complete new snapshot.
+ *
+ * The rename replaces the target inode: existing file mode/ownership is not
+ * preserved, and a symlink at dbPath is replaced rather than written through.
+ * Agent DB snapshots are owned runtime files, so this trade-off favors a
+ * private 0600 replacement over retaining prior target metadata.
+ */
+export function atomicWriteDbSnapshotSync(dbPath: string, snapshot: DbSnapshot): void {
+	const dirPath = dirname(dbPath);
+	const tmpPath = join(dirPath, `.${basename(dbPath)}.${process.pid}.${Date.now()}.${randomUUID()}.tmp`);
+	let fd: number | null = null;
+	let renamed = false;
+
+	try {
+		fd = openSync(tmpPath, "wx", 0o600);
+		writeFileSync(fd, Buffer.from(snapshot));
+		fsyncSync(fd);
+		closeSync(fd);
+		fd = null;
+
+		renameSync(tmpPath, dbPath);
+		renamed = true;
+		fsyncDirectoryBestEffort(dirPath);
+	} finally {
+		closeBestEffort(fd);
+		if (!renamed) {
+			try {
+				unlinkSync(tmpPath);
+			} catch {
+				// The temp file may not have been created yet.
+			}
+		}
+	}
+}

package/packages/pi-coding-agent/src/modes/interactive/controllers/chat-controller.ts

@@ -894,6 +894,7 @@ export async function handleAgentEvent(host: InteractiveModeStateHost & {
 				component.setExpanded(host.toolOutputExpanded);
 				host.chatContainer.addChild(component);
 				host.pendingTools.set(event.toolCallId, component);
+				renderedSegments.push({ kind: "tool", contentIndex: Number.MAX_SAFE_INTEGER, component });
 				host.ui.requestRender();
 			}
 			break;
@@ -927,6 +928,7 @@ export async function handleAgentEvent(host: InteractiveModeStateHost & {
 				host.streamingComponent.setShowMetadata(true);
 				host.streamingComponent.updateContent(host.streamingMessage);
 			}
+			replaceCompactToolRowsWithPhaseSummary(host);
 			host.streamingComponent = undefined;
 			host.streamingMessage = undefined;
 			renderedSegments = [];

package/packages/pi-coding-agent/src/resources/extensions/memory/storage-safety-guard.test.ts

@@ -0,0 +1,14 @@
+import assert from "node:assert/strict";
+import { readFileSync } from "node:fs";
+import { join } from "node:path";
+import test from "node:test";
+
+test("MemoryStorage persists sql.js snapshots through the atomic DB snapshot writer", () => {
+	const src = readFileSync(
+		join(process.cwd(), "packages", "pi-coding-agent", "src", "resources", "extensions", "memory", "storage.ts"),
+		"utf-8",
+	);
+
+	assert.match(src, /atomicWriteDbSnapshotSync\(/, "storage must use atomic DB snapshot writes");
+	assert.doesNotMatch(src, /writeFileSync\(this\.dbPath/, "direct live DB overwrite is forbidden");
+});

package/packages/pi-coding-agent/src/resources/extensions/memory/storage.ts

@@ -9,8 +9,9 @@
 
 import initSqlJs, { type Database as SqlJsDatabase } from "sql.js";
 import { randomUUID } from "crypto";
-import { existsSync, mkdirSync, readFileSync, writeFileSync } from "fs";
+import { existsSync, mkdirSync, readFileSync } from "fs";
 import { dirname } from "path";
+import { atomicWriteDbSnapshotSync } from "../../../core/db-snapshot.js";
 
 export interface ThreadRow {
 	thread_id: string;
@@ -74,7 +75,7 @@ export class MemoryStorage {
 
 	private persist(): void {
 		const data = this.db.export();
-		writeFileSync(this.dbPath, Buffer.from(data));
+		atomicWriteDbSnapshotSync(this.dbPath, data);
 	}
 
 	private schedulePersist(): void {