gsd-pi 2.80.0-dev.2be7caf18 → 2.80.0-dev.3065f7bfa

package/dist/resources/extensions/gsd/clean-root-preflight.js

@@ -3,13 +3,13 @@
  *
  * #2909: Adds a fast-path git status check before milestone completion merges.
  * When the working tree is dirty the user is warned and changes are auto-stashed
- * so the merge can proceed cleanly.  After the merge completes, postflightPopStash
- * restores the stashed changes.
+ * so the merge can proceed cleanly. After the merge completes, postflightPopStash
+ * restores the stashed changes and reports whether manual recovery is needed.
  *
  * Design constraints (from Trek-e approval):
  *  - Warn the user before stashing (no silent surprises)
  *  - git stash push / git stash pop only — no custom stash management layer
- *  - Stash/pop errors are logged but MUST NOT block the merge
+ *  - Stash/pop errors are logged but MUST NOT block the merge itself
  *  - Fast-path status check — clean trees pay no extra cost
  */
 import { execFileSync } from "node:child_process";
@@ -98,7 +98,8 @@ export function preflightCleanRoot(basePath, milestoneId, notify) {
  *
  * Only called when preflightCleanRoot returned stashPushed=true.
  * Any pop error (e.g. conflict) is logged and notified but does NOT throw —
- * the merge already completed successfully.
+ * the merge already completed successfully. Callers must treat
+ * needsManualRecovery=true as a dirty workspace stop, not a clean completion.
  */
 export function postflightPopStash(basePath, milestoneId, stashMarker, notify) {
     let stashRef = null;
@@ -108,7 +109,11 @@ export function postflightPopStash(basePath, milestoneId, stashMarker, notify) {
             const msg = `No matching GSD preflight stash found for milestone ${milestoneId}; leaving stash list untouched.`;
             logWarning("preflight", msg);
             notify(msg, "warning");
-            return;
+            return {
+                restored: false,
+                needsManualRecovery: true,
+                message: msg,
+            };
         }
         execFileSync("git", ["stash", "pop", stashRef], {
             cwd: basePath,
@@ -116,7 +121,14 @@ export function postflightPopStash(basePath, milestoneId, stashMarker, notify) {
             encoding: "utf-8",
             env: GIT_NO_PROMPT_ENV,
         });
-        notify(`Restored stashed changes after milestone ${milestoneId} merge.`, "info");
+        const msg = `Restored stashed changes after milestone ${milestoneId} merge.`;
+        notify(msg, "info");
+        return {
+            restored: true,
+            needsManualRecovery: false,
+            message: msg,
+            stashRef,
+        };
     }
     catch (err) {
         // Pop conflicts mean the merged code collides with the stashed changes.
@@ -127,5 +139,11 @@ export function postflightPopStash(basePath, milestoneId, stashMarker, notify) {
         const msg = `git stash pop ${stashRef ?? ""}`.trim() + ` failed after merge of milestone ${milestoneId}: ${err instanceof Error ? err.message : String(err)}. ${restoreHint}`;
         logWarning("preflight", msg);
         notify(msg, "warning");
+        return {
+            restored: false,
+            needsManualRecovery: true,
+            message: msg,
+            ...(stashRef ? { stashRef } : {}),
+        };
     }
 }

package/dist/resources/extensions/gsd/commands-handlers.js

@@ -17,6 +17,8 @@ import { isAutoActive, checkRemoteAutoSession } from "./auto.js";
 import { getAutoWorktreePath } from "./auto-worktree.js";
 import { currentDirectoryRoot, projectRoot } from "./commands/context.js";
 import { loadPrompt } from "./prompt-loader.js";
+import { buildDoctorHealIssuePayload, buildDoctorHealSummary, buildWorkflowDispatchContent, } from "./workflow-protocol.js";
+import { restoreGsdWorkflowTools, scopeGsdWorkflowToolsForDispatch, } from "./bootstrap/register-hooks.js";
 const UPDATE_REGISTRY_URL = "https://registry.npmjs.org/gsd-pi/latest";
 const UPDATE_FETCH_TIMEOUT_MS = 5000;
 // Detects a bun-installed gsd via `process.argv[1]`. Mirrors isBunInstall in
@@ -64,13 +66,19 @@ export function dispatchDoctorHeal(pi, scope, reportText, structuredIssues) {
     const workflowPath = process.env.GSD_WORKFLOW_PATH ?? join(gsdHome(), "agent", "GSD-WORKFLOW.md");
     const workflow = readFileSync(workflowPath, "utf-8");
     const prompt = loadPrompt("doctor-heal", {
-        doctorSummary: reportText,
-        structuredIssues,
+        doctorSummary: buildDoctorHealSummary(reportText),
+        structuredIssues: buildDoctorHealIssuePayload(structuredIssues),
         scopeLabel: scope ?? "active milestone / blocking scope",
         doctorCommandSuffix: scope ? ` ${scope}` : "",
     });
-    const content = `Read the following GSD workflow protocol and execute exactly.\n\n${workflow}\n\n## Your Task\n\n${prompt}`;
-    pi.sendMessage({ customType: "gsd-doctor-heal", content, display: false }, { triggerTurn: true });
+    const content = buildWorkflowDispatchContent({ workflow, workflowPath, task: prompt });
+    const savedTools = scopeGsdWorkflowToolsForDispatch(pi);
+    try {
+        pi.sendMessage({ customType: "gsd-doctor-heal", content, display: false }, { triggerTurn: true });
+    }
+    finally {
+        restoreGsdWorkflowTools(pi, savedTools);
+    }
 }
 /** Parse doctor command args into structured flags and positionals (pure, no I/O). */
 export function parseDoctorArgs(args) {
@@ -213,11 +221,17 @@ export async function handleTriage(ctx, pi, basePath) {
     });
     const workflowPath = process.env.GSD_WORKFLOW_PATH ?? join(gsdHome(), "agent", "GSD-WORKFLOW.md");
     const workflow = readFileSync(workflowPath, "utf-8");
-    pi.sendMessage({
-        customType: "gsd-triage",
-        content: `Read the following GSD workflow protocol and execute exactly.\n\n${workflow}\n\n## Your Task\n\n${prompt}`,
-        display: false,
-    }, { triggerTurn: true });
+    const savedTools = scopeGsdWorkflowToolsForDispatch(pi);
+    try {
+        pi.sendMessage({
+            customType: "gsd-triage",
+            content: buildWorkflowDispatchContent({ workflow, workflowPath, task: prompt }),
+            display: false,
+        }, { triggerTurn: true });
+    }
+    finally {
+        restoreGsdWorkflowTools(pi, savedTools);
+    }
 }
 export async function handleSteer(change, ctx, pi) {
     const basePath = currentDirectoryRoot();

package/dist/resources/extensions/gsd/context-budget.js

@@ -7,7 +7,7 @@
  *
  * @see D001 (module location), D002 (200K fallback), D003 (section-boundary truncation)
  */
-import { getCharsPerToken } from "./token-counter.js";
+import { getCharsPerToken, isAccurateCountingAvailable, countTokensSync, } from "./token-counter.js";
 // ─── Budget ratio constants ──────────────────────────────────────────────────
 // Percentages of total context window allocated to each budget category.
 // These are applied after tokens→chars conversion.
@@ -23,6 +23,22 @@ const CHARS_PER_TOKEN = 4;
 const DEFAULT_CONTEXT_WINDOW = 200_000;
 /** Conservative effective context for Claude Code subscription routing (#4676) */
 const CLAUDE_CODE_EFFECTIVE_CONTEXT_WINDOW = 200_000;
+/**
+ * Cached empirical chars-per-token from a tiktoken probe, keyed by provider.
+ * countTokensSync's fallback path is provider-aware, so we cache per-provider
+ * to preserve that distinction once the encoder warms. The cl100k_base encoder
+ * itself gives a stable ratio for ASCII English so a single probe per provider
+ * key is sufficient. Empty map means "not yet probed" or "encoder unavailable".
+ */
+const _empiricalCharsPerTokenByProvider = new Map();
+/**
+ * Test hook — clears the empirical chars-per-token cache so test cases that
+ * assert against the static char-ratio fallback aren't polluted by a prior
+ * tiktoken-warmed run in the same process. Production code must not call this.
+ */
+export function _resetEmpiricalCacheForTest() {
+    _empiricalCharsPerTokenByProvider.clear();
+}
 /** Percentage of context consumed before suggesting a continue-here checkpoint */
 const CONTINUE_THRESHOLD_PERCENT = 70;
 // ─── Task count bounds ───────────────────────────────────────────────────────
@@ -46,7 +62,26 @@ const TASK_COUNT_TIERS = [
 export function computeBudgets(contextWindow, provider) {
     const effectiveWindow = contextWindow > 0 ? contextWindow : DEFAULT_CONTEXT_WINDOW;
     const charsPerToken = provider ? getCharsPerToken(provider) : CHARS_PER_TOKEN;
-    const totalChars = effectiveWindow * charsPerToken;
+    // Prefer the tiktoken encoder for total-char estimation when it has been
+    // warmed (initTokenCounter resolved). The cl100k_base ratio is stable for
+    // ASCII English, so probe once per provider and cache — computeBudgets is
+    // called multiple times per prompt build and the probe encode is otherwise
+    // wasted work.
+    let totalChars;
+    if (isAccurateCountingAvailable()) {
+        const providerKey = provider ?? "__default__";
+        let empirical = _empiricalCharsPerTokenByProvider.get(providerKey);
+        if (empirical === undefined) {
+            const probe = "the quick brown fox jumps over the lazy dog ".repeat(64);
+            const probeTokens = countTokensSync(probe, provider);
+            empirical = probeTokens > 0 ? probe.length / probeTokens : charsPerToken;
+            _empiricalCharsPerTokenByProvider.set(providerKey, empirical);
+        }
+        totalChars = effectiveWindow * empirical;
+    }
+    else {
+        totalChars = effectiveWindow * charsPerToken;
+    }
     return {
         summaryBudgetChars: Math.floor(totalChars * SUMMARY_RATIO),
         inlineContextBudgetChars: Math.floor(totalChars * INLINE_CONTEXT_RATIO),

package/dist/resources/extensions/gsd/db/unit-dispatches.js

@@ -253,6 +253,45 @@ export function markCanceled(dispatchId, reason) {
      SET status = 'canceled', ended_at = :ended_at, exit_reason = :reason
      WHERE id = :id AND status IN ('pending','claimed','running')`).run({ ":id": dispatchId, ":ended_at": now, ":reason": reason });
 }
+/**
+ * Best-effort signal/crash cleanup: cancel the latest active dispatch owned by
+ * a worker when the process is exiting before the normal loop can settle it.
+ */
+export function markLatestActiveForWorkerCanceled(workerId, reason) {
+    if (!isDbAvailable())
+        return false;
+    const now = new Date().toISOString();
+    const db = _getAdapter();
+    const result = transaction(() => {
+        return db.prepare(`UPDATE unit_dispatches
+       SET status = 'canceled', ended_at = :ended_at, exit_reason = :reason
+       WHERE id = (
+         SELECT id FROM unit_dispatches
+         WHERE worker_id = :worker_id
+           AND status IN ('pending','claimed','running')
+         ORDER BY id DESC
+         LIMIT 1
+       )`).run({
+            ":ended_at": now,
+            ":reason": reason,
+            ":worker_id": workerId,
+        });
+    });
+    const changes = typeof result.changes === "number"
+        ? result.changes
+        : 0;
+    if (changes <= 0)
+        return false;
+    insertAuditEvent({
+        eventId: randomUUID(),
+        traceId: workerId,
+        category: "orchestration",
+        type: "dispatch-canceled",
+        ts: now,
+        payload: { workerId, reason },
+    });
+    return true;
+}
 /**
  * Fetch the most recent N dispatches for a unit. Used by recordDispatchClaim
  * callers to compute attempt_n and by detect-stuck.ts (B3) to consult

package/dist/resources/extensions/gsd/db-base-schema.js

@@ -46,7 +46,8 @@ export function createBaseSchemaObjects(db, hooks) {
       slice_id TEXT DEFAULT NULL,
       task_id TEXT DEFAULT NULL,
       full_content TEXT NOT NULL DEFAULT '',
-      imported_at TEXT NOT NULL DEFAULT ''
+      imported_at TEXT NOT NULL DEFAULT '',
+      content_hash TEXT DEFAULT NULL
     )
   `);
     db.exec(`
@@ -64,7 +65,8 @@ export function createBaseSchemaObjects(db, hooks) {
       hit_count INTEGER NOT NULL DEFAULT 0,
       scope TEXT NOT NULL DEFAULT 'project',
       tags TEXT NOT NULL DEFAULT '[]',
-      structured_fields TEXT DEFAULT NULL
+      structured_fields TEXT DEFAULT NULL,
+      last_hit_at TEXT DEFAULT NULL
     )
   `);
     db.exec(`

package/dist/resources/extensions/gsd/db-migration-steps.js

@@ -379,6 +379,12 @@ export function applyMigrationV26MilestoneCommitAttributions(db) {
   `);
     db.exec("CREATE INDEX IF NOT EXISTS idx_milestone_commit_attr_milestone ON milestone_commit_attributions(milestone_id)");
 }
+export function applyMigrationV27ArtifactHash(db) {
+    ensureColumn(db, "artifacts", "content_hash", "ALTER TABLE artifacts ADD COLUMN content_hash TEXT DEFAULT NULL");
+}
+export function applyMigrationV28MemoryLastHitAt(db) {
+    ensureColumn(db, "memories", "last_hit_at", "ALTER TABLE memories ADD COLUMN last_hit_at TEXT DEFAULT NULL");
+}
 export function applyMigrationV22QualityGateRepair(db, hooks) {
     const qgInfo = db.prepare("PRAGMA table_info(quality_gates)").all();
     const taskIdCol = qgInfo.find((r) => r["name"] === "task_id");

package/dist/resources/extensions/gsd/ecosystem/gsd-extension-api.js

@@ -127,6 +127,8 @@ export function createGSDExtensionAPI(pi, sharedHandlers) {
         getActiveTools: () => pi.getActiveTools(),
         getAllTools: () => pi.getAllTools(),
         setActiveTools: (...args) => pi.setActiveTools(...args),
+        getVisibleSkills: () => pi.getVisibleSkills(),
+        setVisibleSkills: (...args) => pi.setVisibleSkills(...args),
         getCommands: () => pi.getCommands(),
         // ── Model & thinking ───────────────────────────────────────────────
         setModel: (...args) => pi.setModel(...args),

package/dist/resources/extensions/gsd/git-service.js

@@ -13,6 +13,7 @@ import { isAbsolute, join, normalize, relative, resolve, sep } from "node:path";
 import { gsdRoot } from "./paths.js";
 import { GIT_NO_PROMPT_ENV } from "./git-constants.js";
 import { loadEffectiveGSDPreferences } from "./preferences.js";
+import { logWarning } from "./workflow-logger.js";
 import { detectWorktreeName, } from "./worktree.js";
 import { SLICE_BRANCH_RE, QUICK_BRANCH_RE, WORKFLOW_BRANCH_RE } from "./branch-patterns.js";
 import { nativeGetCurrentBranch, nativeDetectMainBranch, nativeBranchExists, nativeHasChanges, nativeAddAllWithExclusions, nativeHasStagedChanges, nativeCommit, nativeRmCached, nativeUpdateRef, nativeAddPaths, nativeResetSoft, nativeCommitSubject, _resetHasChangesCache, } from "./native-git-bridge.js";
@@ -535,14 +536,45 @@ export class GitServiceImpl {
         if (keyFiles.length === 0)
             return false;
         const allExclusions = [...RUNTIME_EXCLUSION_PATHS, ...extraExclusions];
-        const paths = Array.from(new Set(keyFiles
+        const normalized = keyFiles
             .map(file => normalizeRepoRelativePath(this.basePath, file))
             .filter((file) => file !== null)
-            .filter(file => !isExcludedScopedPath(file, allExclusions))));
+            .filter(file => !isExcludedScopedPath(file, allExclusions));
+        // Drop entries that don't exist on disk. The LLM occasionally lists files
+        // it intended to write but didn't (or names them with wrong casing/path).
+        // Pre-`b304f738b` `git add -A` swallowed these silently; the scoped
+        // pathspec form passes each path explicitly, so a single bad entry made
+        // the whole commit fail (see #5500). Filter so valid paths still commit.
+        const missing = [];
+        const existing = [];
+        for (const path of normalized) {
+            if (existsSync(join(this.basePath, path))) {
+                existing.push(path);
+            }
+            else {
+                missing.push(path);
+            }
+        }
+        if (missing.length > 0) {
+            logWarning("engine", `scoped stage: dropping ${missing.length} non-existent keyFile(s) from task commit: ${missing.join(", ")}`, { file: "git-service.ts" });
+        }
+        const paths = Array.from(new Set(existing));
         if (paths.length === 0)
             return false;
-        nativeAddPaths(this.basePath, paths);
-        return true;
+        try {
+            nativeAddPaths(this.basePath, paths);
+            return true;
+        }
+        catch (err) {
+            // Defense-in-depth: even after existence filtering, libgit2/git can
+            // still reject paths (gitignore matches, case-only differences on
+            // case-insensitive FS, submodule boundaries). Returning false lets
+            // autoCommit fall through to smartStage so the commit still goes out
+            // — restoring the resilience the unscoped path used to provide.
+            const msg = err instanceof Error ? err.message : String(err);
+            logWarning("engine", `scoped stage failed (${msg}); falling back to smartStage`, { file: "git-service.ts" });
+            return false;
+        }
     }
     /** Tracks whether runtime file cleanup has run this session. */
     _runtimeFilesCleanedUp = false;

package/dist/resources/extensions/gsd/gsd-db.js

@@ -22,6 +22,7 @@
 // intentionally independent store for cross-worktree claim races and is
 // excluded from this invariant.
 import { createRequire } from "node:module";
+import { createHash } from "node:crypto";
 import { existsSync, copyFileSync, mkdirSync, realpathSync } from "node:fs";
 import { dirname } from "node:path";
 import { GSDError, GSD_STALE_STATE } from "./errors.js";
@@ -36,7 +37,7 @@ import { rowToActiveDecision, rowToActiveRequirement, rowToDecision, rowToRequir
 import { rowToGate } from "./db-gate-rows.js";
 import { rowToArtifact, rowToMilestone } from "./db-milestone-artifact-rows.js";
 import { backupDatabaseBeforeMigration } from "./db-migration-backup.js";
-import { applyMigrationV2Artifacts, applyMigrationV3Memories, applyMigrationV4DecisionMadeBy, applyMigrationV5HierarchyTables, applyMigrationV6SliceSummaries, applyMigrationV7Dependencies, applyMigrationV8PlanningFields, applyMigrationV9Ordering, applyMigrationV10ReplanTrigger, applyMigrationV11TaskPlanning, applyMigrationV12QualityGates, applyMigrationV13HotPathIndexes, applyMigrationV14SliceDependencies, applyMigrationV15AuditTables, applyMigrationV16EscalationSource, applyMigrationV17TaskEscalation, applyMigrationV18MemorySources, applyMigrationV19MemoryFts, applyMigrationV20MemoryRelations, applyMigrationV21StructuredMemories, applyMigrationV22QualityGateRepair, applyMigrationV23MilestoneQueue, applyMigrationV26MilestoneCommitAttributions, } from "./db-migration-steps.js";
+import { applyMigrationV2Artifacts, applyMigrationV3Memories, applyMigrationV4DecisionMadeBy, applyMigrationV5HierarchyTables, applyMigrationV6SliceSummaries, applyMigrationV7Dependencies, applyMigrationV8PlanningFields, applyMigrationV9Ordering, applyMigrationV10ReplanTrigger, applyMigrationV11TaskPlanning, applyMigrationV12QualityGates, applyMigrationV13HotPathIndexes, applyMigrationV14SliceDependencies, applyMigrationV15AuditTables, applyMigrationV16EscalationSource, applyMigrationV17TaskEscalation, applyMigrationV18MemorySources, applyMigrationV19MemoryFts, applyMigrationV20MemoryRelations, applyMigrationV21StructuredMemories, applyMigrationV22QualityGateRepair, applyMigrationV23MilestoneQueue, applyMigrationV26MilestoneCommitAttributions, applyMigrationV27ArtifactHash, applyMigrationV28MemoryLastHitAt, } from "./db-migration-steps.js";
 import { isMemoriesFtsAvailableSchema, tryCreateMemoriesFtsSchema } from "./db-memory-fts-schema.js";
 import { createDbOpenState } from "./db-open-state.js";
 import { createRuntimeKvTableV25 } from "./db-runtime-kv-schema.js";
@@ -52,7 +53,7 @@ const providerLoader = createSqliteProviderLoader({
     nodeVersion: process.versions.node,
     writeStderr: (message) => process.stderr.write(message),
 });
-export const SCHEMA_VERSION = 26;
+export const SCHEMA_VERSION = 28;
 function initSchema(db, fileBacked) {
     if (fileBacked)
         db.exec("PRAGMA journal_mode=WAL");
@@ -250,6 +251,14 @@ function migrateSchema(db) {
             applyMigrationV26MilestoneCommitAttributions(db);
             recordSchemaVersion(db, 26);
         }
+        if (currentVersion < 27) {
+            applyMigrationV27ArtifactHash(db);
+            recordSchemaVersion(db, 27);
+        }
+        if (currentVersion < 28) {
+            applyMigrationV28MemoryLastHitAt(db);
+            recordSchemaVersion(db, 28);
+        }
         db.exec("COMMIT");
     }
     catch (err) {
@@ -821,8 +830,9 @@ export function clearArtifacts() {
 export function insertArtifact(a) {
     if (!currentDb)
         throw new GSDError(GSD_STALE_STATE, "gsd-db: No database open");
-    currentDb.prepare(`INSERT OR REPLACE INTO artifacts (path, artifact_type, milestone_id, slice_id, task_id, full_content, imported_at)
-     VALUES (:path, :artifact_type, :milestone_id, :slice_id, :task_id, :full_content, :imported_at)`).run({
+    const contentHash = createHash("sha256").update(a.full_content).digest("hex");
+    currentDb.prepare(`INSERT OR REPLACE INTO artifacts (path, artifact_type, milestone_id, slice_id, task_id, full_content, imported_at, content_hash)
+     VALUES (:path, :artifact_type, :milestone_id, :slice_id, :task_id, :full_content, :imported_at, :content_hash)`).run({
         ":path": a.path,
         ":artifact_type": a.artifact_type,
         ":milestone_id": a.milestone_id,
@@ -830,6 +840,7 @@ export function insertArtifact(a) {
         ":task_id": a.task_id,
         ":full_content": a.full_content,
         ":imported_at": new Date().toISOString(),
+        ":content_hash": contentHash,
     });
 }
 export function insertMilestone(m) {
@@ -1521,6 +1532,13 @@ export function reconcileWorktreeDb(mainDbPath, worktreeDbPath) {
             const hasEscalationAwaiting = wtTaskInfo.some((col) => col["name"] === "escalation_awaiting_review");
             const hasEscalationArtifact = wtTaskInfo.some((col) => col["name"] === "escalation_artifact_path");
             const hasEscalationOverride = wtTaskInfo.some((col) => col["name"] === "escalation_override_applied_at");
+            const wtArtifactInfo = adapter.prepare("PRAGMA wt.table_info('artifacts')").all();
+            const hasArtifactContentHash = wtArtifactInfo.some((col) => col["name"] === "content_hash");
+            const wtMemoryInfo = adapter.prepare("PRAGMA wt.table_info('memories')").all();
+            const hasMemoryScope = wtMemoryInfo.some((col) => col["name"] === "scope");
+            const hasMemoryTags = wtMemoryInfo.some((col) => col["name"] === "tags");
+            const hasMemoryStructuredFields = wtMemoryInfo.some((col) => col["name"] === "structured_fields");
+            const hasMemoryLastHitAt = wtMemoryInfo.some((col) => col["name"] === "last_hit_at");
             const decConf = adapter.prepare(`SELECT m.id FROM decisions m INNER JOIN wt.decisions w ON m.id = w.id WHERE m.decision != w.decision OR m.choice != w.choice OR m.rationale != w.rationale OR ${hasMadeBy ? "m.made_by != w.made_by" : "'agent' != 'agent'"} OR m.superseded_by IS NOT w.superseded_by`).all();
             for (const row of decConf)
                 conflicts.push(`decision ${row["id"]}: modified in both`);
@@ -1553,12 +1571,17 @@ export function reconcileWorktreeDb(mainDbPath, worktreeDbPath) {
                  supporting_slices, validation, notes, full_content, superseded_by
           FROM wt.requirements
         `).run());
+                // V27: preserve content_hash. If the worktree predates V27 (no column),
+                // fall back to the main DB's existing hash so reconcile doesn't null
+                // out integrity fingerprints on artifacts that were unchanged in wt.
                 merged.artifacts = countChanges(adapter.prepare(`
           INSERT OR REPLACE INTO artifacts (
-            path, artifact_type, milestone_id, slice_id, task_id, full_content, imported_at
+            path, artifact_type, milestone_id, slice_id, task_id, full_content, imported_at, content_hash
           )
-          SELECT path, artifact_type, milestone_id, slice_id, task_id, full_content, imported_at
-          FROM wt.artifacts
+          SELECT w.path, w.artifact_type, w.milestone_id, w.slice_id, w.task_id, w.full_content, w.imported_at,
+                 ${hasArtifactContentHash ? "w.content_hash" : "m.content_hash"}
+          FROM wt.artifacts w
+          LEFT JOIN artifacts m ON m.path = w.path
         `).run());
                 // Merge milestones — worktree may have updated status/planning fields.
                 // Never downgrade status: complete > active > pre-planning (#4372).
@@ -1656,15 +1679,25 @@ export function reconcileWorktreeDb(mainDbPath, worktreeDbPath) {
           FROM wt.tasks w
           LEFT JOIN tasks m ON m.milestone_id = w.milestone_id AND m.slice_id = w.slice_id AND m.id = w.id
         `).run());
-                // Merge memories — keep worktree-learned insights
+                // Merge memories — keep worktree-learned insights.
+                // V18 (scope, tags), V21 (structured_fields), V28 (last_hit_at): for each
+                // column the wt may not yet have (older worktree DB), fall back to the
+                // main DB's existing value via LEFT JOIN so reconcile never silently
+                // resets these fields to defaults on rows that already had them.
                 merged.memories = countChanges(adapter.prepare(`
           INSERT OR REPLACE INTO memories (
             seq, id, category, content, confidence, source_unit_type, source_unit_id,
-            created_at, updated_at, superseded_by, hit_count
+            created_at, updated_at, superseded_by, hit_count,
+            scope, tags, structured_fields, last_hit_at
           )
-          SELECT seq, id, category, content, confidence, source_unit_type, source_unit_id,
-                 created_at, updated_at, superseded_by, hit_count
-          FROM wt.memories
+          SELECT w.seq, w.id, w.category, w.content, w.confidence, w.source_unit_type, w.source_unit_id,
+                 w.created_at, w.updated_at, w.superseded_by, w.hit_count,
+                 ${hasMemoryScope ? "w.scope" : "COALESCE(m.scope, 'project')"},
+                 ${hasMemoryTags ? "w.tags" : "COALESCE(m.tags, '[]')"},
+                 ${hasMemoryStructuredFields ? "w.structured_fields" : "m.structured_fields"},
+                 ${hasMemoryLastHitAt ? "w.last_hit_at" : "m.last_hit_at"}
+          FROM wt.memories w
+          LEFT JOIN memories m ON m.id = w.id
         `).run());
                 // Merge verification evidence — append-only, use INSERT OR IGNORE to avoid duplicates
                 merged.verification_evidence = countChanges(adapter.prepare(`
@@ -2423,7 +2456,7 @@ export function updateMemoryContentRow(id, content, confidence, updatedAt) {
 export function incrementMemoryHitCount(id, updatedAt) {
     if (!currentDb)
         throw new GSDError(GSD_STALE_STATE, "gsd-db: No database open");
-    currentDb.prepare("UPDATE memories SET hit_count = hit_count + 1, updated_at = :updated_at WHERE id = :id").run({ ":updated_at": updatedAt, ":id": id });
+    currentDb.prepare("UPDATE memories SET hit_count = hit_count + 1, updated_at = :updated_at, last_hit_at = :last_hit_at WHERE id = :id").run({ ":updated_at": updatedAt, ":last_hit_at": updatedAt, ":id": id });
 }
 export function supersedeMemoryRow(oldId, newId, updatedAt) {
     if (!currentDb)

package/dist/resources/extensions/gsd/guided-flow.js

@@ -51,6 +51,23 @@ export { showQueue, handleQueueReorder, showQueueAdd, buildExistingMilestonesCon
 import { logWarning } from "./workflow-logger.js";
 import { deleteRuntimeKv } from "./db/runtime-kv.js";
 import { PAUSED_SESSION_KV_KEY } from "./interrupted-session.js";
+import { buildWorkflowDispatchContent } from "./workflow-protocol.js";
+import { isFullGsdToolSurfaceRequested, restoreGsdWorkflowTools, scopeGsdWorkflowToolsForDispatch } from "./bootstrap/register-hooks.js";
+function scheduleAutoStartAfterIdle(ctx, pi, basePath, verboseMode, options, launch = startAutoDetached) {
+    const waitForIdle = typeof ctx.waitForIdle === "function"
+        ? ctx.waitForIdle.bind(ctx)
+        : async () => { };
+    void waitForIdle()
+        .then(() => {
+        setTimeout(() => launch(ctx, pi, basePath, verboseMode, options), 0);
+    })
+        .catch((err) => {
+        const message = err instanceof Error ? err.message : String(err);
+        ctx.ui.notify(`Auto-start failed while waiting for the prior turn to settle: ${message}`, "error");
+        logWarning("guided", `auto-start idle wait failed: ${message}`);
+    });
+}
+export const _scheduleAutoStartAfterIdleForTest = scheduleAutoStartAfterIdle;
 // ─── Scope-based validator wrappers ──────────────────────────────────────────
 // These thin wrappers accept a MilestoneScope so callers that already hold a
 // pinned scope never have to re-derive (basePath, milestoneId) separately.
@@ -325,7 +342,7 @@ async function dispatchNextDeepProjectSetupStage(entry) {
     const { DISPATCH_RULES, hasPendingDeepStage } = await import("./auto-dispatch.js");
     if (!hasPendingDeepStage(prefs, entry.basePath)) {
         pendingDeepProjectSetupMap.delete(entry.basePath);
-        startAutoDetached(entry.ctx, entry.pi, entry.basePath, false, { step: entry.step });
+        scheduleAutoStartAfterIdle(entry.ctx, entry.pi, entry.basePath, false, { step: entry.step });
         return true;
     }
     const state = await deriveState(entry.basePath);
@@ -359,14 +376,14 @@ async function dispatchNextDeepProjectSetupStage(entry) {
         }
         else if (hasPendingDeepStage(prefs, entry.basePath)) {
             pendingDeepProjectSetupMap.delete(entry.basePath);
-            startAutoDetached(entry.ctx, entry.pi, entry.basePath, false, { step: entry.step });
+            scheduleAutoStartAfterIdle(entry.ctx, entry.pi, entry.basePath, false, { step: entry.step });
             return true;
         }
         return false;
     }
     if (!USER_DRIVEN_DEEP_SETUP_UNITS.has(result.unitType)) {
         pendingDeepProjectSetupMap.delete(entry.basePath);
-        startAutoDetached(entry.ctx, entry.pi, entry.basePath, false, { step: entry.step });
+        scheduleAutoStartAfterIdle(entry.ctx, entry.pi, entry.basePath, false, { step: entry.step });
         return true;
     }
     entry.currentUnitType = result.unitType;
@@ -544,7 +561,7 @@ export function checkAutoStartAfterDiscuss() {
     }
     pendingAutoStartMap.delete(basePath);
     ctx.ui.notify(`Milestone ${milestoneId} ready.`, "success");
-    startAutoDetached(ctx, pi, basePath, false, { step });
+    scheduleAutoStartAfterIdle(ctx, pi, basePath, false, { step });
     return true;
 }
 /**
@@ -830,38 +847,55 @@ async function dispatchWorkflow(pi, note, customType = "gsd-run", ctx, unitType)
             return;
         }
     }
-    // Scope tools for discuss flows (#2949).
+    // Scope tools for guided workflow turns (#2949, token-consumption savings).
     // Providers with grammar-based constrained decoding (xAI/Grok) return
     // "Grammar is too complex" when the combined tool schema is too large.
-    // Discuss flows only need a small subset of GSD tools — strip the heavy
-    // planning/execution/completion tools to keep the grammar within limits.
+    // Guided workflow turns only need the active unit's tool surface; strip
+    // unrelated GSD tools and broad non-GSD tools for this queued turn, then
+    // restore so the narrowed surface does not leak into future dispatches.
     let savedTools = null;
-    if (unitType?.startsWith("discuss-")) {
+    try {
         const currentTools = pi.getActiveTools();
-        savedTools = currentTools;
-        // Keep all non-GSD tools (builtins, other extensions) and only the
-        // GSD tools on the discuss allowlist.
-        const scopedTools = currentTools.filter((t) => !t.startsWith("gsd_") || DISCUSS_TOOLS_ALLOWLIST.includes(t));
-        pi.setActiveTools(scopedTools);
-        debugLog("discuss-tool-scoping", {
-            unitType,
-            before: currentTools.length,
-            after: scopedTools.length,
-            removed: currentTools.length - scopedTools.length,
-        });
-    }
-    const workflowPath = process.env.GSD_WORKFLOW_PATH ?? join(gsdHome(), "agent", "GSD-WORKFLOW.md");
-    const workflow = readFileSync(workflowPath, "utf-8");
-    pi.sendMessage({
-        customType,
-        content: `Read the following GSD workflow protocol and execute exactly.\n\n${workflow}\n\n## Your Task\n\n${note}`,
-        display: false,
-    }, { triggerTurn: true });
-    // Restore full tool set after the message is queued. The LLM turn has
-    // already captured the scoped set — restoring prevents the narrowed
-    // tools from leaking into subsequent dispatches (#3628).
-    if (savedTools) {
-        pi.setActiveTools(savedTools);
+        savedTools = {
+            tools: currentTools,
+            visibleSkills: typeof pi.getVisibleSkills === "function" ? pi.getVisibleSkills() : undefined,
+            restoreVisibleSkills: typeof pi.setVisibleSkills === "function",
+        };
+        if (unitType?.startsWith("discuss-") && !isFullGsdToolSurfaceRequested()) {
+            // Keep all non-GSD tools (builtins, other extensions) and only the
+            // GSD tools on the discuss allowlist.
+            const scopedTools = currentTools.filter((t) => !t.startsWith("gsd_") || DISCUSS_TOOLS_ALLOWLIST.includes(t));
+            pi.setActiveTools(scopedTools);
+            const scopedState = scopeGsdWorkflowToolsForDispatch(pi, unitType);
+            savedTools = {
+                tools: currentTools,
+                visibleSkills: scopedState?.visibleSkills ?? savedTools.visibleSkills,
+                restoreVisibleSkills: scopedState?.restoreVisibleSkills ?? savedTools.restoreVisibleSkills,
+            };
+            debugLog("discuss-tool-scoping", {
+                unitType,
+                before: currentTools.length,
+                after: pi.getActiveTools().length,
+                removed: currentTools.length - pi.getActiveTools().length,
+            });
+        }
+        else {
+            savedTools = scopeGsdWorkflowToolsForDispatch(pi, unitType) ?? savedTools;
+        }
+        const workflowPath = process.env.GSD_WORKFLOW_PATH ?? join(gsdHome(), "agent", "GSD-WORKFLOW.md");
+        const workflow = readFileSync(workflowPath, "utf-8");
+        pi.sendMessage({
+            customType,
+            content: buildWorkflowDispatchContent({ workflow, workflowPath, task: note }),
+            display: false,
+        }, { triggerTurn: true });
+    }
+    finally {
+        // Restore full tool set after the message is queued. The LLM turn has
+        // already captured the scoped set — restoring prevents the narrowed
+        // tools from leaking into subsequent dispatches (#3628). The finally
+        // block ensures restoration even if sendMessage throws.
+        restoreGsdWorkflowTools(pi, savedTools);
     }
 }
 function getStructuredQuestionsAvailability(pi, ctx) {