gsd-pi 2.80.0-dev.2848d9009 → 2.80.0-dev.2be7caf18

package/README.md

@@ -361,7 +361,7 @@ The database is authoritative for milestones, slices, tasks, requirements, decis
 
 2. **Context pre-loading** — The dispatch prompt includes inlined task plans, slice plans, prior task summaries, dependency summaries, roadmap excerpts, and decisions register. The LLM starts with everything it needs instead of spending tool calls reading files.
 
-3. **Context Mode** — Context Mode is enabled by default and gives every auto-mode unit guidance for preserving context. Agents are steered toward `gsd_exec` for noisy scans, builds, tests, and diagnostics; full stdout/stderr is saved under `.gsd/exec/` while only a short digest enters the conversation. `gsd_exec_search` lets agents reuse prior runs instead of repeating expensive checks, and `gsd_resume` reads `.gsd/last-snapshot.md` after compaction or resume. Opt out with `context_mode.enabled: false`; tune sandbox timeout/output caps with `context_mode.exec_timeout_ms`, `context_mode.exec_stdout_cap_bytes`, and `context_mode.exec_digest_chars`.
+3. **Context Mode** — Context Mode is enabled by default and gives eligible auto-mode units guidance for preserving context. Agents are steered toward `gsd_exec` for noisy scans, builds, tests, and diagnostics; capped stdout/stderr and metadata are saved under `.gsd/exec/` while only a short digest enters the conversation. `gsd_exec_search` lets agents reuse prior runs instead of repeating expensive checks, and `gsd_resume` reads a prior compaction snapshot from `.gsd/last-snapshot.md` when one exists. Opt out with `context_mode.enabled: false` to disable Context Mode guidance, snapshot injection, `gsd_exec`, `gsd_exec_search`, and `gsd_resume`; tune sandbox timeout/output caps and environment forwarding with `context_mode.exec_timeout_ms`, `context_mode.exec_stdout_cap_bytes`, `context_mode.exec_digest_chars`, and `context_mode.exec_env_allowlist`.
 
 4. **Git isolation** — When `git.isolation` is set to `worktree` or `branch`, each milestone runs on its own `milestone/<MID>` branch (in a worktree or in-place). All slice work commits sequentially — no branch switching, no merge conflicts. When the milestone completes, it's squash-merged to main as one clean commit. The default is `none` (work on the current branch), configurable via preferences. If `worktree` is configured in a repo with no committed `HEAD`, GSD temporarily behaves as `none` until the first commit exists because git worktrees need a committed start point.
 
@@ -659,10 +659,11 @@ auto_report: true
 | `unique_milestone_ids`            | Uses unique milestone names to avoid clashes when working in teams of people                          |
 | `git.isolation`                   | `none` (default), `worktree`, or `branch` — enable worktree or branch isolation for milestone work. `worktree` requires a committed `HEAD`; zero-commit repos temporarily run as `none`    |
 | `git.manage_gitignore`            | Set `false` to prevent GSD from modifying `.gitignore`                                                |
-| `context_mode.enabled`            | Context Mode is default-on; set `false` to disable `gsd_exec`, exec history guidance, and resume snapshots |
+| `context_mode.enabled`            | Context Mode is default-on; set `false` to disable prompt guidance, snapshot injection, `gsd_exec`, `gsd_exec_search`, and `gsd_resume` |
 | `context_mode.exec_timeout_ms`    | Timeout for sandboxed `gsd_exec` runs (default: 30000)                                                |
 | `context_mode.exec_stdout_cap_bytes` | Persisted stdout cap for `gsd_exec` output (default: 1048576)                                      |
 | `context_mode.exec_digest_chars`  | Trailing stdout characters returned to the agent context (default: 300)                              |
+| `context_mode.exec_env_allowlist` | Environment variables forwarded to sandboxed `gsd_exec` runs in addition to `PATH` and `HOME`        |
 | `verification_commands`           | Array of shell commands to run after task execution (e.g., `["npm run lint", "npm run test"]`)        |
 | `verification_auto_fix`           | Auto-retry on verification failures (default: true)                                                   |
 | `verification_max_retries`        | Max retries for verification failures (default: 2)                                                    |

package/dist/resources/.managed-resources-content-hash

@@ -1 +1 @@
-4b5e4f1bfb55a0a1
+8e6c04d763f9ba00

package/dist/resources/extensions/gsd/auto/loop.js

@@ -25,6 +25,8 @@ import { normalizeRealPath } from "../paths.js";
 import { decideCooldownRecovery, decideDispatchClaim, decideEngineDispatch, decideFinalizeResult, decideInfrastructureError, decideIterationErrorRecovery, decideMemoryPressure, decideModelPolicyBlocked, decideMinRequestInterval, decideWorkflowLoop, formatDispatchExceptionSummary, formatUnhandledDispatchErrorSummary, resolveUnitRequestTimestamp, shouldUseCustomEnginePath, } from "./workflow-kernel.js";
 import { hydrateCustomVerifyRetryCounts, saveCustomVerifyRetryCounts, } from "./custom-verify-retry-store.js";
 import { settleDispatchCompleted, settleDispatchFailed, } from "./workflow-dispatch-ledger.js";
+import { emitOpenUnitEndForUnit } from "../crash-recovery.js";
+import { writeUnitRuntimeRecord } from "../unit-runtime.js";
 import { openDispatchClaim } from "./workflow-dispatch-claim.js";
 import { completeWorkflowIteration } from "./workflow-iteration-completion.js";
 import { createWorkflowJournalReporter } from "./workflow-journal-reporter.js";
@@ -133,6 +135,24 @@ async function enforceMinRequestInterval(s, prefs) {
         await new Promise(r => setTimeout(r, decision.waitMs));
     }
 }
+function closeOutCrashedUnit(s, iterData, err) {
+    const summary = formatDispatchExceptionSummary({ error: err });
+    try {
+        emitOpenUnitEndForUnit(s.basePath, iterData.unitType, iterData.unitId, "cancelled", {
+            message: summary,
+            category: "unit-exception",
+            isTransient: false,
+        });
+        writeUnitRuntimeRecord(s.basePath, iterData.unitType, iterData.unitId, s.currentUnit?.startedAt ?? Date.now(), {
+            phase: "crashed",
+            lastProgressAt: Date.now(),
+            lastProgressKind: "unit-exception",
+        });
+    }
+    catch (closeoutErr) {
+        logWarning("dispatch", `unit crash closeout failed: ${closeoutErr instanceof Error ? closeoutErr.message : String(closeoutErr)}`);
+    }
+}
 /**
  * Main auto-mode execution loop. Iterates: derive → dispatch → guards →
  * runUnit → finalize → repeat. Exits when s.active becomes false or a
@@ -392,7 +412,17 @@ export async function autoLoop(ctx, pi, s, deps, options) {
                 }
                 // ── Unit execution (shared with dev path) ──
                 await enforceMinRequestInterval(s, prefs);
-                const unitPhaseResult = await runUnitPhaseViaContract(dispatchContract, ic, iterData, loopState, undefined, unitDispatchDeps);
+                let unitPhaseResult;
+                try {
+                    unitPhaseResult = await runUnitPhaseViaContract(dispatchContract, ic, iterData, loopState, undefined, unitDispatchDeps);
+                }
+                catch (err) {
+                    if (err instanceof ModelPolicyDispatchBlockedError) {
+                        throw err;
+                    }
+                    closeOutCrashedUnit(s, iterData, err);
+                    throw err;
+                }
                 if (unitPhaseResult.action === "next") {
                     const requestTimestamp = resolveUnitRequestTimestamp(unitPhaseResult.data);
                     if (requestTimestamp !== undefined)
@@ -580,6 +610,7 @@ export async function autoLoop(ctx, pi, s, deps, options) {
                 if (err instanceof ModelPolicyDispatchBlockedError) {
                     throw err;
                 }
+                closeOutCrashedUnit(s, iterData, err);
                 dispatchSettled = settleDispatchFailed(dispatchId, formatDispatchExceptionSummary({ error: err }), {
                     markFailed: markDispatchFailed,
                     logWriteFailure: logDispatchLedgerWriteFailure,

package/dist/resources/extensions/gsd/auto-prompts.js

@@ -21,6 +21,7 @@ import { assertGateCoverage, getGatesForTurn, } from "./gate-registry.js";
 import { formatDecisionsCompact, formatRequirementsCompact } from "./structured-data-formatter.js";
 import { readPhaseAnchor, formatAnchorForPrompt } from "./phase-anchor.js";
 import { composeContextModeInstructions, composeInlinedContext } from "./unit-context-composer.js";
+import { readCompactionSnapshot } from "./compaction-snapshot.js";
 import { logWarning } from "./workflow-logger.js";
 import { inlineGraphSubgraph } from "./graph-context.js";
 import { buildExtractionStepsBlock } from "./commands-extract-learnings.js";
@@ -178,8 +179,19 @@ function renderContextModeForPrompt(unitType, base, renderMode = "standalone") {
         renderMode,
     });
 }
-function prependContextModeToBlock(unitType, base, block, renderMode = "standalone") {
+function renderContextModeBlockForPrompt(unitType, base, renderMode = "standalone") {
     const contextMode = renderContextModeForPrompt(unitType, base, renderMode);
+    if (!contextMode)
+        return "";
+    if (renderMode === "nested")
+        return contextMode;
+    const snapshot = readCompactionSnapshot(base);
+    if (!snapshot?.trim())
+        return contextMode;
+    return `${contextMode}\n\n## Context Snapshot\nSource: \`.gsd/last-snapshot.md\`\n\n${snapshot.trimEnd()}`;
+}
+function prependContextModeToBlock(unitType, base, block, renderMode = "standalone") {
+    const contextMode = renderContextModeBlockForPrompt(unitType, base, renderMode);
     if (!contextMode)
         return block;
     if (!block.trim())

package/dist/resources/extensions/gsd/auto.js

@@ -112,11 +112,12 @@ const STATE_REBUILD_MIN_INTERVAL_MS = 30_000;
  * the DB is unavailable (e.g. fresh project before init) we skip registration
  * silently rather than blocking session start.
  */
-function registerAutoWorkerForSession(session) {
+function registerAutoWorkerForSession(session, projectRootOverride) {
     if (session.workerId)
         return; // already registered (e.g. resume re-runs)
     try {
-        const projectRootRealpath = normalizeRealPath(session.scope?.workspace.projectRoot
+        const projectRootRealpath = normalizeRealPath(projectRootOverride
+            ?? session.scope?.workspace.projectRoot
             ?? (session.originalBasePath || session.basePath));
         session.workerId = registerAutoWorker({ projectRootRealpath });
     }
@@ -1631,6 +1632,10 @@ export async function startAuto(ctx, pi, base, verboseMode, options) {
         lockBase,
         buildResolver,
     };
+    // Register the worker before bootstrap enters a milestone worktree.
+    // This ensures enterMilestone can claim a lease and seed dispatch claims
+    // for crash-recovery fidelity (#5405).
+    registerAutoWorkerForSession(s, base);
     const ready = await bootstrapAutoSession(s, ctx, pi, base, verboseMode, requestedStepMode, bootstrapDeps, freshStartAssessment);
     if (!ready)
         return;

package/dist/resources/extensions/gsd/bootstrap/exec-tools.js

@@ -3,21 +3,34 @@
 // Exposes the Context Mode runtime tools in-process. Default-on; opt out with
 // `context_mode.enabled: false` in preferences.
 import { Type } from "@sinclair/typebox";
+async function loadContextModePreferences(baseDir) {
+    const [{ loadEffectiveGSDPreferences }, { logWarning }] = await Promise.all([
+        import("../preferences.js"),
+        import("../workflow-logger.js"),
+    ]);
+    try {
+        return loadEffectiveGSDPreferences(baseDir)?.preferences ?? null;
+    }
+    catch (err) {
+        logWarning("tool", `Context Mode tool could not load preferences: ${err instanceof Error ? err.message : String(err)}`);
+        return null;
+    }
+}
 export function registerExecTools(pi) {
     pi.registerTool({
         name: "gsd_exec",
         label: "Exec (Sandboxed)",
-        description: "Run a short script (bash/node/python) in a subprocess. Full stdout/stderr persist to " +
+        description: "Run a short script (bash/node/python) in a subprocess. Capped stdout/stderr and metadata persist to " +
             ".gsd/exec/<id>.{stdout,stderr,meta.json}; only a short digest returns in context. Use " +
             "this instead of reading many files or emitting large tool outputs — e.g. have the script " +
             "count/grep/summarize and log the finding. Enabled by default; opt out via " +
             "preferences.context_mode.enabled=false.",
-        promptSnippet: "Run a bash/node/python script in a sandbox; full output is saved to disk and only a digest returns",
+        promptSnippet: "Run a bash/node/python script in a sandbox; capped output is saved to disk and only a digest returns",
         promptGuidelines: [
             "Prefer gsd_exec for analyses that would otherwise read >3 files or produce large tool output.",
             "Write scripts that log the finding (counts, matches, summaries) rather than raw dumps.",
             "The digest is the last ~300 chars of stdout — size your log output accordingly.",
-            "Need the full output? Read the stdout_path returned in details (file on local disk).",
+            "Need persisted output? Read the stdout_path returned in details (file on local disk).",
         ],
         parameters: Type.Object({
             runtime: Type.Union([Type.Literal("bash"), Type.Literal("node"), Type.Literal("python")], { description: "Interpreter: bash (-c), node (-e), or python3 (-c)." }),
@@ -30,21 +43,11 @@ export function registerExecTools(pi) {
             })),
         }),
         async execute(_toolCallId, params, _signal, _onUpdate, _ctx) {
-            const [{ executeGsdExec }, { loadEffectiveGSDPreferences }, { logWarning }] = await Promise.all([
-                import("../tools/exec-tool.js"),
-                import("../preferences.js"),
-                import("../workflow-logger.js"),
-            ]);
-            let prefs = null;
-            try {
-                prefs = loadEffectiveGSDPreferences();
-            }
-            catch (err) {
-                logWarning("tool", `gsd_exec could not load preferences: ${err instanceof Error ? err.message : String(err)}`);
-            }
+            const { executeGsdExec } = await import("../tools/exec-tool.js");
+            const baseDir = process.cwd();
             return executeGsdExec(params, {
-                baseDir: process.cwd(),
-                preferences: prefs?.preferences ?? null,
+                baseDir,
+                preferences: await loadContextModePreferences(baseDir),
             });
         },
     });
@@ -56,7 +59,7 @@ export function registerExecTools(pi) {
         promptSnippet: "Search prior gsd_exec runs by substring, runtime, or failing-only filter",
         promptGuidelines: [
             "Use this before re-running an expensive analysis — the prior run's stdout file may still answer.",
-            "The preview shows the trailing ~300 chars of stdout; read stdout_path for the full transcript.",
+            "The preview shows the trailing ~300 chars of stdout; read stdout_path for persisted output.",
         ],
         parameters: Type.Object({
             query: Type.Optional(Type.String({ description: "Substring matched against id and purpose (case-insensitive)." })),
@@ -68,8 +71,10 @@ export function registerExecTools(pi) {
         }),
         async execute(_toolCallId, params, _signal, _onUpdate, _ctx) {
             const { executeExecSearch } = await import("../tools/exec-search-tool.js");
+            const baseDir = process.cwd();
             return executeExecSearch(params, {
-                baseDir: process.cwd(),
+                baseDir,
+                preferences: await loadContextModePreferences(baseDir),
             });
         },
     });
@@ -87,8 +92,10 @@ export function registerExecTools(pi) {
         parameters: Type.Object({}),
         async execute(_toolCallId, params, _signal, _onUpdate, _ctx) {
             const { executeResume } = await import("../tools/resume-tool.js");
+            const baseDir = process.cwd();
             return executeResume(params, {
-                baseDir: process.cwd(),
+                baseDir,
+                preferences: await loadContextModePreferences(baseDir),
             });
         },
     });

package/dist/resources/extensions/gsd/bootstrap/register-hooks.js

@@ -52,6 +52,25 @@ async function applyDisabledModelProviderPolicy(ctx) {
         // Non-fatal: keep default provider visibility if preferences cannot be loaded.
     }
 }
+/**
+ * Bridge `context_management.compaction_threshold_percent` from GSD preferences
+ * into the agent's runtime compaction settings (#5475). The preference is
+ * validated to (0.5, 0.95) at load time, but defense-in-depth normalization
+ * here protects against a stale or hand-edited prefs file. Calling with
+ * `undefined` clears any prior override so a removed preference does not leak.
+ */
+async function applyCompactionThresholdOverride(ctx) {
+    try {
+        const { loadEffectiveGSDPreferences } = await import("../preferences.js");
+        const prefs = loadEffectiveGSDPreferences();
+        const raw = prefs?.preferences.context_management?.compaction_threshold_percent;
+        const value = typeof raw === "number" && Number.isFinite(raw) && raw > 0 && raw < 1 ? raw : undefined;
+        ctx.setCompactionThresholdOverride(value);
+    }
+    catch {
+        // Non-fatal: leave any existing override in place.
+    }
+}
 export function resolveNotificationStoreBasePath(cwd = process.cwd()) {
     return resolveWorktreeProjectRoot(cwd);
 }
@@ -101,6 +120,7 @@ export function registerHooks(pi, ecosystemHandlers) {
         await resetAskUserQuestionsTurnCache();
         await syncServiceTierStatus(ctx);
         await applyDisabledModelProviderPolicy(ctx);
+        await applyCompactionThresholdOverride(ctx);
         // Skip MCP auto-prep when running inside an auto-worktree (see session_switch below).
         const { isInAutoWorktree } = await import("../auto-worktree.js");
         if (!isInAutoWorktree(process.cwd())) {
@@ -149,6 +169,7 @@ export function registerHooks(pi, ecosystemHandlers) {
         clearDiscussionFlowState(process.cwd());
         await syncServiceTierStatus(ctx);
         await applyDisabledModelProviderPolicy(ctx);
+        await applyCompactionThresholdOverride(ctx);
         // Skip MCP auto-prep when running inside an auto-worktree. The worktree
         // already has .mcp.json from createAutoWorktree, and re-running the writer
         // post-chdir rewrites the file mid-run (non-idempotent due to cwd-relative

package/dist/resources/extensions/gsd/crash-recovery.js

@@ -29,6 +29,7 @@ import { _getAdapter, isDbAvailable } from "./gsd-db.js";
 import { gsdRoot, normalizeRealPath } from "./paths.js";
 import { atomicWriteSync } from "./atomic-write.js";
 import { effectiveLockFile } from "./session-lock.js";
+import { isInFlightRuntimePhase, listUnitRuntimeRecords } from "./unit-runtime.js";
 const SESSION_FILE_KV_KEY = "session_file";
 function lockPath(basePath) {
     return join(gsdRoot(basePath), effectiveLockFile());
@@ -72,9 +73,37 @@ function getLatestDispatchForWorker(workerId) {
      LIMIT 1`).get({ ":worker_id": workerId });
     return row ?? null;
 }
-function workerToLockData(worker) {
+function latestInFlightRuntimeRecord(basePath) {
+    const records = listUnitRuntimeRecords(basePath).filter((record) => isInFlightRuntimePhase(record.phase));
+    if (records.length === 0)
+        return null;
+    return records.sort((a, b) => {
+        const bTime = b.updatedAt || b.startedAt || 0;
+        const aTime = a.updatedAt || a.startedAt || 0;
+        return bTime - aTime;
+    })[0] ?? null;
+}
+function runtimeRecordToLockData(worker, record, sessionFile) {
+    const startedAt = Number.isFinite(record.startedAt)
+        ? new Date(record.startedAt).toISOString()
+        : worker.started_at;
+    return {
+        pid: worker.pid,
+        startedAt: worker.started_at,
+        unitType: record.unitType,
+        unitId: record.unitId,
+        unitStartedAt: startedAt,
+        sessionFile,
+    };
+}
+function workerToLockData(basePath, worker) {
     const dispatch = getLatestDispatchForWorker(worker.worker_id);
     const sessionFile = getRuntimeKv("worker", worker.worker_id, SESSION_FILE_KV_KEY) ?? undefined;
+    if (!dispatch) {
+        const runtimeRecord = latestInFlightRuntimeRecord(basePath);
+        if (runtimeRecord)
+            return runtimeRecordToLockData(worker, runtimeRecord, sessionFile);
+    }
     return {
         pid: worker.pid,
         startedAt: worker.started_at,
@@ -172,7 +201,7 @@ export function readCrashLock(basePath) {
             const projectRoot = normalizeRealPath(basePath);
             const stale = findStaleWorkerForProject(projectRoot);
             if (stale)
-                return workerToLockData(stale);
+                return workerToLockData(basePath, stale);
         }
         catch {
             // Fall through to the legacy lock-file compatibility path.
@@ -232,18 +261,32 @@ export function formatCrashInfo(lock) {
 export function emitCrashRecoveredUnitEnd(basePath, lock) {
     if (!lock.unitType || !lock.unitId || lock.unitType === "starting")
         return;
+    emitOpenUnitEndForUnit(basePath, lock.unitType, lock.unitId, "crash-recovered");
+}
+export function emitOpenUnitEndForUnit(basePath, unitType, unitId, status, errorContext) {
     try {
         const all = queryJournal(basePath);
-        const starts = all.filter((e) => e.eventType === "unit-start" && e.data?.unitId === lock.unitId);
+        const starts = all.filter((e) => e.eventType === "unit-start" &&
+            e.data?.unitType === unitType &&
+            e.data?.unitId === unitId);
         if (starts.length === 0)
-            return;
-        const lastStart = starts[starts.length - 1];
+            return false;
+        const lastStart = [...starts].reverse().find((start) => {
+            return !all.some((e) => e.eventType === "unit-end" &&
+                e.data?.unitType === unitType &&
+                e.data?.unitId === unitId &&
+                e.causedBy?.flowId === start.flowId &&
+                e.causedBy?.seq === start.seq);
+        });
+        if (!lastStart)
+            return false;
         const alreadyClosed = all.some((e) => e.eventType === "unit-end" &&
-            e.data?.unitId === lock.unitId &&
+            e.data?.unitType === unitType &&
+            e.data?.unitId === unitId &&
             e.causedBy?.flowId === lastStart.flowId &&
             e.causedBy?.seq === lastStart.seq);
         if (alreadyClosed)
-            return;
+            return false;
         const maxSeq = all
             .filter((e) => e.flowId === lastStart.flowId)
             .reduce((max, e) => Math.max(max, e.seq), lastStart.seq);
@@ -253,16 +296,19 @@ export function emitCrashRecoveredUnitEnd(basePath, lock) {
             seq: maxSeq + 1,
             eventType: "unit-end",
             data: {
-                unitType: lock.unitType,
-                unitId: lock.unitId,
-                status: "crash-recovered",
+                unitType,
+                unitId,
+                status,
                 artifactVerified: false,
+                ...(errorContext ? { errorContext } : {}),
             },
             causedBy: { flowId: lastStart.flowId, seq: lastStart.seq },
         });
+        return true;
     }
     catch {
         // Never throw from crash recovery path.
+        return false;
     }
 }
 /**

package/dist/resources/extensions/gsd/guided-flow.js

@@ -16,7 +16,7 @@ import { invalidateAllCaches } from "./cache.js";
 import { startAutoDetached } from "./auto.js";
 import { clearLock } from "./crash-recovery.js";
 import { assessInterruptedSession, formatInterruptedSessionRunningMessage, formatInterruptedSessionSummary, } from "./interrupted-session.js";
-import { listUnitRuntimeRecords, clearUnitRuntimeRecord } from "./unit-runtime.js";
+import { listUnitRuntimeRecords, clearUnitRuntimeRecord, isInFlightRuntimePhase } from "./unit-runtime.js";
 import { resolveExpectedArtifactPath } from "./auto.js";
 import { gsdHome } from "./gsd-home.js";
 import { gsdRoot, milestonesDir, resolveMilestoneFile, resolveMilestonePath, resolveSliceFile, resolveSlicePath, resolveGsdRootFile, relGsdRootFile, relMilestoneFile, relSliceFile, clearPathCache, } from "./paths.js";
@@ -71,6 +71,19 @@ export function verifyExpectedArtifactForScope(scope, unitType, unitId) {
 export function resolveExpectedArtifactPathForScope(scope, unitType, unitId) {
     return resolveExpectedArtifactPath(unitType, unitId, scope.workspace.projectRoot);
 }
+async function runQuickTaskChoice(ctx, pi) {
+    if (!ctx.hasUI) {
+        ctx.ui.notify("Run /gsd quick <task> for small bounded work, or /gsd do <task> for natural-language routing.", "info");
+        return;
+    }
+    const task = (await ctx.ui.input("Quick task", "Describe the small task to run with /gsd quick"))?.trim();
+    if (!task) {
+        ctx.ui.notify("Quick task cancelled.", "info");
+        return;
+    }
+    const { handleQuick } = await import("./quick.js");
+    await handleQuick(task, ctx, pi);
+}
 /**
  * Scope-based overload of isGhostMilestone.
  * Binds basePath and milestoneId from the scope, ensuring path resolution
@@ -1469,8 +1482,8 @@ function selfHealRuntimeRecords(basePath, ctx) {
                 cleared++;
                 continue;
             }
-            // Clear records stuck in dispatched or timeout phase (process died mid-unit)
-            if (phase === "dispatched" || phase === "timeout") {
+            // Clear records stuck in an in-flight phase (process died mid-unit).
+            if (isInFlightRuntimePhase(phase)) {
                 clearUnitRuntimeRecord(basePath, unitType, unitId);
                 cleared++;
             }
@@ -1695,6 +1708,20 @@ export async function showSmartEntry(ctx, pi, basePath, options) {
             return;
         }
     }
+    if (interrupted.classification !== "recoverable") {
+        try {
+            const { autoImportMarkdownHierarchyIfDbMismatch } = await import("./migration-auto-check.js");
+            const result = await autoImportMarkdownHierarchyIfDbMismatch(basePath);
+            if (result.action === "imported") {
+                ctx.ui.notify(`Recovered migrated planning state into gsd.db (${result.reason}): ${result.afterDb.milestones} milestone(s), ${result.afterDb.slices} slice(s), ${result.afterDb.tasks} task(s).`, "info");
+            }
+        }
+        catch (err) {
+            const message = err instanceof Error ? err.message : String(err);
+            ctx.ui.notify(`GSD could not auto-import existing planning state into gsd.db: ${message}`, "warning");
+            logWarning("guided", `planning state auto-import failed: ${message}`, { file: "guided-flow.ts" });
+        }
+    }
     // Always derive from the project root — the assessment may have derived
     // state from a worktree path that was cleaned up in the stale branch above.
     const state = await deriveState(basePath);
@@ -1795,7 +1822,7 @@ export async function showSmartEntry(ctx, pi, basePath, options) {
                 notYetMessage: "Run /gsd when ready.",
             });
             if (choice === "quick_task") {
-                ctx.ui.notify("Run /gsd quick <task> for small bounded work, or /gsd do <task> for natural-language routing.", "info");
+                await runQuickTaskChoice(ctx, pi);
             }
             else if (choice === "new_milestone") {
                 setPendingAutoStart(basePath, { ctx, pi, basePath, milestoneId: nextId, step: stepMode });
@@ -1837,7 +1864,7 @@ export async function showSmartEntry(ctx, pi, basePath, options) {
             notYetMessage: "Run /gsd when ready.",
         });
         if (choice === "quick_task") {
-            ctx.ui.notify("Run /gsd quick <task> for small bounded work, or /gsd do <task> for natural-language routing.", "info");
+            await runQuickTaskChoice(ctx, pi);
         }
         else if (choice === "new_milestone") {
             const milestoneIds = findMilestoneIds(basePath);
@@ -1968,7 +1995,7 @@ export async function showSmartEntry(ctx, pi, basePath, options) {
                 notYetMessage: "Run /gsd when ready.",
             });
             if (choice === "quick_task") {
-                ctx.ui.notify("Run /gsd quick <task> for small bounded work, or /gsd do <task> for natural-language routing.", "info");
+                await runQuickTaskChoice(ctx, pi);
             }
             else if (choice === "plan") {
                 setPendingAutoStart(basePath, { ctx, pi, basePath, milestoneId, step: stepMode });

package/dist/resources/extensions/gsd/migrate/command.js

@@ -15,6 +15,43 @@ import { fileURLToPath } from "node:url";
 import { showNextAction } from "../../shared/tui.js";
 import { validatePlanningDirectory, parsePlanningDirectory, transformToGSD, generatePreview, writeGSDDirectory, } from "./index.js";
 import { homedir } from "node:os";
+import { ensureDbOpen } from "../bootstrap/dynamic-tools.js";
+import { clearEngineHierarchy, transaction } from "../gsd-db.js";
+import { migrateFromMarkdown } from "../md-importer.js";
+import { invalidateStateCache } from "../state.js";
+function assertMigrationImportMatchesPreview(imported, preview) {
+    const mismatches = [];
+    if (imported.hierarchy.milestones !== preview.milestoneCount) {
+        mismatches.push(`milestones ${imported.hierarchy.milestones}/${preview.milestoneCount}`);
+    }
+    if (imported.hierarchy.slices !== preview.totalSlices) {
+        mismatches.push(`slices ${imported.hierarchy.slices}/${preview.totalSlices}`);
+    }
+    if (imported.hierarchy.tasks !== preview.totalTasks) {
+        mismatches.push(`tasks ${imported.hierarchy.tasks}/${preview.totalTasks}`);
+    }
+    if (imported.requirements !== preview.requirements.total) {
+        mismatches.push(`requirements ${imported.requirements}/${preview.requirements.total}`);
+    }
+    if (mismatches.length > 0) {
+        throw new Error(`migration DB import verification failed: ${mismatches.join(", ")}`);
+    }
+}
+export async function importWrittenMigrationToDb(basePath, preview) {
+    const opened = await ensureDbOpen(basePath);
+    if (!opened) {
+        throw new Error(`failed to open or create the GSD database at ${basePath}`);
+    }
+    const counts = transaction(() => {
+        clearEngineHierarchy();
+        const imported = migrateFromMarkdown(basePath);
+        if (preview)
+            assertMigrationImportMatchesPreview(imported, preview);
+        return imported;
+    });
+    invalidateStateCache();
+    return counts;
+}
 /** Format preview stats for embedding in the review prompt. */
 function formatPreviewStats(preview) {
     const lines = [
@@ -126,12 +163,14 @@ export async function handleMigrate(args, ctx, pi) {
     ctx.ui.notify("Writing .gsd directory…", "info");
     const result = await writeGSDDirectory(project, process.cwd());
     const gsdPath = gsdRoot(process.cwd());
-    ctx.ui.notify(`✓ Migration complete — ${result.paths.length} file(s) written to .gsd/`, "info");
+    const imported = await importWrittenMigrationToDb(process.cwd(), preview);
+    ctx.ui.notify(`✓ Migration complete — ${result.paths.length} file(s) written to .gsd/ and ${imported.hierarchy.milestones}M/${imported.hierarchy.slices}S/${imported.hierarchy.tasks}T imported to the database`, "info");
     // ── Post-write review offer ────────────────────────────────────────────────
     const reviewChoice = await showNextAction(ctx, {
         title: "Migration written",
         summary: [
             `${result.paths.length} files written to .gsd/`,
+            `${imported.hierarchy.milestones} milestone(s), ${imported.hierarchy.slices} slice(s), and ${imported.hierarchy.tasks} task(s) imported to gsd.db`,
             "",
             "The agent can now review the migrated output against GSD-2 standards —",
             "checking structure, content quality, deriveState() round-trip, and",

package/dist/resources/extensions/gsd/migration-auto-check.js

@@ -0,0 +1,87 @@
+import { existsSync, readdirSync, readFileSync } from "node:fs";
+import { ensureDbOpen } from "./bootstrap/dynamic-tools.js";
+import { clearEngineHierarchy, getAllMilestones, getMilestoneSlices, getSliceTasks, isDbAvailable, transaction, } from "./gsd-db.js";
+import { migrateHierarchyToDb } from "./md-importer.js";
+import { parsePlan, parseRoadmap } from "./parsers-legacy.js";
+import { milestonesDir, resolveMilestoneFile, resolveSliceFile, } from "./paths.js";
+import { invalidateStateCache } from "./state.js";
+function zeroCounts() {
+    return { milestones: 0, slices: 0, tasks: 0 };
+}
+function sameCounts(a, b) {
+    return a.milestones === b.milestones && a.slices === b.slices && a.tasks === b.tasks;
+}
+export function countMarkdownHierarchy(basePath) {
+    const root = milestonesDir(basePath);
+    if (!existsSync(root))
+        return zeroCounts();
+    const counts = zeroCounts();
+    for (const entry of readdirSync(root, { withFileTypes: true })) {
+        if (!entry.isDirectory() || !/^M\d+/.test(entry.name))
+            continue;
+        counts.milestones++;
+        const roadmapPath = resolveMilestoneFile(basePath, entry.name, "ROADMAP");
+        if (!roadmapPath || !existsSync(roadmapPath))
+            continue;
+        const roadmap = parseRoadmap(readFileSync(roadmapPath, "utf-8"));
+        counts.slices += roadmap.slices.length;
+        for (const slice of roadmap.slices) {
+            const planPath = resolveSliceFile(basePath, entry.name, slice.id, "PLAN");
+            if (!planPath || !existsSync(planPath))
+                continue;
+            const plan = parsePlan(readFileSync(planPath, "utf-8"));
+            counts.tasks += plan.tasks.length;
+        }
+    }
+    return counts;
+}
+export function countDbHierarchy() {
+    if (!isDbAvailable())
+        return zeroCounts();
+    const counts = zeroCounts();
+    const milestones = getAllMilestones();
+    counts.milestones = milestones.length;
+    for (const milestone of milestones) {
+        const slices = getMilestoneSlices(milestone.id);
+        counts.slices += slices.length;
+        for (const slice of slices) {
+            counts.tasks += getSliceTasks(milestone.id, slice.id).length;
+        }
+    }
+    return counts;
+}
+export async function autoImportMarkdownHierarchyIfDbMismatch(basePath) {
+    const markdown = countMarkdownHierarchy(basePath);
+    if (sameCounts(markdown, zeroCounts())) {
+        return {
+            action: "none",
+            reason: "no-markdown",
+            markdown,
+            beforeDb: zeroCounts(),
+            afterDb: zeroCounts(),
+        };
+    }
+    const opened = await ensureDbOpen(basePath);
+    if (!opened || !isDbAvailable()) {
+        throw new Error(`failed to open or create the GSD database at ${basePath}`);
+    }
+    const beforeDb = countDbHierarchy();
+    if (sameCounts(markdown, beforeDb)) {
+        return { action: "none", reason: "in-sync", markdown, beforeDb, afterDb: beforeDb };
+    }
+    const reason = sameCounts(beforeDb, zeroCounts()) ? "db-empty" : "count-mismatch";
+    const imported = transaction(() => {
+        clearEngineHierarchy();
+        return migrateHierarchyToDb(basePath);
+    });
+    invalidateStateCache();
+    const afterDb = {
+        milestones: imported.milestones,
+        slices: imported.slices,
+        tasks: imported.tasks,
+    };
+    if (!sameCounts(markdown, afterDb)) {
+        throw new Error(`migration auto-import verification failed: markdown ${markdown.milestones}M/${markdown.slices}S/${markdown.tasks}T, db ${afterDb.milestones}M/${afterDb.slices}S/${afterDb.tasks}T`);
+    }
+    return { action: "imported", reason, markdown, beforeDb, afterDb };
+}