gsd-pi 2.74.0 → 2.75.0-dev.fd2382b9f

package/packages/mcp-server/src/readers/graph.ts

@@ -0,0 +1,855 @@
+// GSD MCP Server — knowledge graph reader
+// Copyright (c) 2026 Jeremy McSpadden <jeremy@fluxlabs.net>
+
+/**
+ * Knowledge Graph for GSD projects.
+ *
+ * Parses .gsd/ artifacts (STATE.md, milestone ROADMAPs, slice PLANs,
+ * KNOWLEDGE.md) into a graph of nodes and edges. Parse errors in any
+ * single artifact are caught and never propagate — the artifact is skipped
+ * and the rest of the graph is returned.
+ *
+ * writeGraph() is atomic: writes to graph.tmp.json then renames to graph.json.
+ */
+
+import { readFileSync, writeFileSync, renameSync, existsSync, mkdirSync } from 'node:fs';
+import { join, resolve } from 'node:path';
+import { resolveGsdRoot, findMilestoneIds, resolveMilestoneDir, findSliceIds, resolveSliceDir } from './paths.js';
+
+// ---------------------------------------------------------------------------
+// Types
+// ---------------------------------------------------------------------------
+
+export type NodeType =
+  | 'milestone'
+  | 'slice'
+  | 'task'
+  | 'rule'
+  | 'pattern'
+  | 'lesson'
+  | 'concept'
+  | 'decision';
+
+export type EdgeType =
+  | 'contains'
+  | 'depends_on'
+  | 'relates_to'
+  | 'implements';
+
+export type ConfidenceTier = 'EXTRACTED' | 'INFERRED' | 'AMBIGUOUS';
+
+export interface GraphNode {
+  id: string;
+  label: string;
+  type: NodeType;
+  description?: string;
+  confidence: ConfidenceTier;
+  sourceFile?: string;
+}
+
+export interface GraphEdge {
+  from: string;
+  to: string;
+  type: EdgeType;
+  confidence: ConfidenceTier;
+}
+
+export interface KnowledgeGraph {
+  nodes: GraphNode[];
+  edges: GraphEdge[];
+  builtAt: string;
+}
+
+export interface GraphStatusResult {
+  exists: boolean;
+  lastBuild?: string;
+  nodeCount?: number;
+  edgeCount?: number;
+  stale?: boolean;
+  ageHours?: number;
+}
+
+export interface GraphQueryResult {
+  nodes: GraphNode[];
+  edges: GraphEdge[];
+  term: string;
+  budget: number;
+}
+
+export interface GraphDiffResult {
+  nodes: {
+    added: string[];
+    removed: string[];
+    changed: string[];
+  };
+  edges: {
+    added: string[];
+    removed: string[];
+  };
+}
+
+// ---------------------------------------------------------------------------
+// Graph file paths
+// ---------------------------------------------------------------------------
+
+function graphsDir(gsdRoot: string): string {
+  return join(gsdRoot, 'graphs');
+}
+
+function graphJsonPath(gsdRoot: string): string {
+  return join(graphsDir(gsdRoot), 'graph.json');
+}
+
+function graphTmpPath(gsdRoot: string): string {
+  return join(graphsDir(gsdRoot), 'graph.tmp.json');
+}
+
+function snapshotPath(gsdRoot: string): string {
+  return join(graphsDir(gsdRoot), '.last-build-snapshot.json');
+}
+
+// ---------------------------------------------------------------------------
+// Parsers — each returns nodes/edges and never throws
+// ---------------------------------------------------------------------------
+
+/**
+ * Parse STATE.md for active milestone and phase concepts.
+ */
+function parseStateFile(gsdRoot: string, nodes: GraphNode[], _edges: GraphEdge[]): void {
+  const statePath = join(gsdRoot, 'STATE.md');
+  if (!existsSync(statePath)) return;
+
+  let content: string;
+  try {
+    content = readFileSync(statePath, 'utf-8');
+  } catch {
+    return;
+  }
+
+  // Extract active milestone
+  const activeMilestoneMatch = content.match(/\*\*Active Milestone:\*\*\s+([A-Z]\d+):\s+(.+)/i);
+  if (activeMilestoneMatch) {
+    const [, milestoneId, title] = activeMilestoneMatch;
+    const id = `milestone:${milestoneId}`;
+    if (!nodes.some((n) => n.id === id)) {
+      nodes.push({
+        id,
+        label: `${milestoneId}: ${title.trim()}`,
+        type: 'milestone',
+        description: `Active milestone: ${milestoneId}`,
+        confidence: 'EXTRACTED',
+        sourceFile: 'STATE.md',
+      });
+    }
+  }
+
+  // Extract phase as concept
+  const phaseMatch = content.match(/\*\*Phase:\*\*\s+(\S+)/i);
+  if (phaseMatch) {
+    const phase = phaseMatch[1].trim();
+    nodes.push({
+      id: `concept:phase:${phase}`,
+      label: `Phase: ${phase}`,
+      type: 'concept',
+      confidence: 'EXTRACTED',
+      sourceFile: 'STATE.md',
+    });
+  }
+}
+
+/**
+ * Parse KNOWLEDGE.md for rules, patterns, and lessons.
+ */
+function parseKnowledgeFile(gsdRoot: string, nodes: GraphNode[], _edges: GraphEdge[]): void {
+  const knowledgePath = join(gsdRoot, 'KNOWLEDGE.md');
+  if (!existsSync(knowledgePath)) return;
+
+  let content: string;
+  try {
+    content = readFileSync(knowledgePath, 'utf-8');
+  } catch {
+    return;
+  }
+
+  // Parse Rules table
+  const rulesMatch = content.match(/## Rules\s*\n([\s\S]*?)(?=\n## |$)/i);
+  if (rulesMatch) {
+    for (const line of rulesMatch[1].split('\n')) {
+      if (!line.includes('|')) continue;
+      const cells = line.split('|').map((c) => c.trim()).filter(Boolean);
+      if (cells.length < 3) continue;
+      if (cells[0].startsWith('#') || cells[0].startsWith('-')) continue;
+      const id = cells[0];
+      if (!/^K\d+$/i.test(id)) continue;
+      nodes.push({
+        id: `rule:${id}`,
+        label: id,
+        type: 'rule',
+        description: cells[2] ?? '',
+        confidence: 'EXTRACTED',
+        sourceFile: 'KNOWLEDGE.md',
+      });
+    }
+  }
+
+  // Parse Patterns table
+  const patternsMatch = content.match(/## Patterns\s*\n([\s\S]*?)(?=\n## |$)/i);
+  if (patternsMatch) {
+    for (const line of patternsMatch[1].split('\n')) {
+      if (!line.includes('|')) continue;
+      const cells = line.split('|').map((c) => c.trim()).filter(Boolean);
+      if (cells.length < 2) continue;
+      if (cells[0].startsWith('#') || cells[0].startsWith('-')) continue;
+      const id = cells[0];
+      if (!/^P\d+$/i.test(id)) continue;
+      nodes.push({
+        id: `pattern:${id}`,
+        label: id,
+        type: 'pattern',
+        description: cells[1] ?? '',
+        confidence: 'EXTRACTED',
+        sourceFile: 'KNOWLEDGE.md',
+      });
+    }
+  }
+
+  // Parse Lessons Learned table
+  const lessonsMatch = content.match(/## Lessons Learned\s*\n([\s\S]*?)(?=\n## |$)/i);
+  if (lessonsMatch) {
+    for (const line of lessonsMatch[1].split('\n')) {
+      if (!line.includes('|')) continue;
+      const cells = line.split('|').map((c) => c.trim()).filter(Boolean);
+      if (cells.length < 2) continue;
+      if (cells[0].startsWith('#') || cells[0].startsWith('-')) continue;
+      const id = cells[0];
+      if (!/^L\d+$/i.test(id)) continue;
+      nodes.push({
+        id: `lesson:${id}`,
+        label: id,
+        type: 'lesson',
+        description: cells[1] ?? '',
+        confidence: 'EXTRACTED',
+        sourceFile: 'KNOWLEDGE.md',
+      });
+    }
+  }
+}
+
+/**
+ * Parse milestone ROADMAP.md files for milestones and slices.
+ */
+function parseMilestoneFiles(
+  gsdRoot: string,
+  nodes: GraphNode[],
+  edges: GraphEdge[],
+): void {
+  const milestoneIds = findMilestoneIds(gsdRoot);
+
+  for (const milestoneId of milestoneIds) {
+    try {
+      parseSingleMilestone(gsdRoot, milestoneId, nodes, edges);
+    } catch {
+      // Skip this milestone on any error
+    }
+  }
+}
+
+function parseSingleMilestone(
+  gsdRoot: string,
+  milestoneId: string,
+  nodes: GraphNode[],
+  edges: GraphEdge[],
+): void {
+  const mDir = resolveMilestoneDir(gsdRoot, milestoneId);
+  if (!mDir) return;
+
+  const milestoneNodeId = `milestone:${milestoneId}`;
+
+  // Try to read the roadmap file
+  const roadmapPath = join(mDir, `${milestoneId}-ROADMAP.md`);
+  let roadmapContent: string | null = null;
+  if (existsSync(roadmapPath)) {
+    try {
+      roadmapContent = readFileSync(roadmapPath, 'utf-8');
+    } catch {
+      // Skip
+    }
+  }
+
+  // Extract milestone title from roadmap
+  let milestoneTitle = milestoneId;
+  if (roadmapContent) {
+    const titleMatch = roadmapContent.match(/^#\s+[A-Z]\d+:\s+(.+)/m);
+    if (titleMatch) milestoneTitle = `${milestoneId}: ${titleMatch[1].trim()}`;
+  }
+
+  // Ensure milestone node exists
+  if (!nodes.some((n) => n.id === milestoneNodeId)) {
+    nodes.push({
+      id: milestoneNodeId,
+      label: milestoneTitle,
+      type: 'milestone',
+      confidence: 'EXTRACTED',
+      sourceFile: roadmapContent ? `milestones/${milestoneId}/${milestoneId}-ROADMAP.md` : undefined,
+    });
+  }
+
+  // Parse slices from roadmap table or filesystem
+  const sliceIds = findSliceIds(gsdRoot, milestoneId);
+  for (const sliceId of sliceIds) {
+    try {
+      parseSingleSlice(gsdRoot, milestoneId, sliceId, milestoneNodeId, nodes, edges);
+    } catch {
+      // Skip this slice on any error
+    }
+  }
+}
+
+function parseSingleSlice(
+  gsdRoot: string,
+  milestoneId: string,
+  sliceId: string,
+  milestoneNodeId: string,
+  nodes: GraphNode[],
+  edges: GraphEdge[],
+): void {
+  const sDir = resolveSliceDir(gsdRoot, milestoneId, sliceId);
+  if (!sDir) return;
+
+  const sliceNodeId = `slice:${milestoneId}:${sliceId}`;
+
+  // Try to read the slice plan
+  const planPath = join(sDir, `${sliceId}-PLAN.md`);
+  let sliceTitle = `${milestoneId}/${sliceId}`;
+  let planContent: string | null = null;
+
+  if (existsSync(planPath)) {
+    try {
+      planContent = readFileSync(planPath, 'utf-8');
+      const titleMatch = planContent.match(/^#\s+[A-Z]\d+:\s+(.+)/m);
+      if (titleMatch) sliceTitle = `${sliceId}: ${titleMatch[1].trim()}`;
+    } catch {
+      // Use default title
+    }
+  }
+
+  nodes.push({
+    id: sliceNodeId,
+    label: sliceTitle,
+    type: 'slice',
+    confidence: 'EXTRACTED',
+    sourceFile: planContent ? `milestones/${milestoneId}/slices/${sliceId}/${sliceId}-PLAN.md` : undefined,
+  });
+
+  // Edge: milestone contains slice
+  edges.push({
+    from: milestoneNodeId,
+    to: sliceNodeId,
+    type: 'contains',
+    confidence: 'EXTRACTED',
+  });
+
+  // Parse tasks from the slice plan
+  if (planContent) {
+    parseTasksFromPlan(planContent, milestoneId, sliceId, sliceNodeId, nodes, edges);
+  }
+}
+
+function parseTasksFromPlan(
+  content: string,
+  milestoneId: string,
+  sliceId: string,
+  sliceNodeId: string,
+  nodes: GraphNode[],
+  edges: GraphEdge[],
+): void {
+  // Match lines like: - [ ] **T01: Title** — description
+  const taskPattern = /[-*]\s+\[[ x]\]\s+\*\*(T\d+):\s*([^*]+)\*\*/g;
+  let match: RegExpExecArray | null;
+
+  while ((match = taskPattern.exec(content)) !== null) {
+    const [, taskId, taskTitle] = match;
+    const taskNodeId = `task:${milestoneId}:${sliceId}:${taskId}`;
+
+    nodes.push({
+      id: taskNodeId,
+      label: `${taskId}: ${taskTitle.trim()}`,
+      type: 'task',
+      confidence: 'EXTRACTED',
+    });
+
+    edges.push({
+      from: sliceNodeId,
+      to: taskNodeId,
+      type: 'contains',
+      confidence: 'EXTRACTED',
+    });
+  }
+}
+
+// ---------------------------------------------------------------------------
+// LEARNINGS.md parser
+// ---------------------------------------------------------------------------
+
+/**
+ * Parse all *-LEARNINGS.md files found in milestone directories.
+ * Extracts Decisions, Lessons, Patterns, and Surprises as typed graph nodes.
+ * Surprises are mapped to the 'lesson' NodeType (no distinct type exists).
+ * Parse errors per file are caught — the file is skipped, never rethrows.
+ */
+function parseLearningsFiles(gsdRoot: string, nodes: GraphNode[], edges: GraphEdge[]): void {
+  const milestoneIds = findMilestoneIds(gsdRoot);
+
+  for (const milestoneId of milestoneIds) {
+    try {
+      parseSingleLearningsFile(gsdRoot, milestoneId, nodes, edges);
+    } catch {
+      // Skip this milestone's LEARNINGS.md on any error
+    }
+  }
+}
+
+function parseSingleLearningsFile(
+  gsdRoot: string,
+  milestoneId: string,
+  nodes: GraphNode[],
+  edges: GraphEdge[],
+): void {
+  const mDir = resolveMilestoneDir(gsdRoot, milestoneId);
+  if (!mDir) return;
+
+  const learningsPath = join(mDir, `${milestoneId}-LEARNINGS.md`);
+  if (!existsSync(learningsPath)) return;
+
+  let content: string;
+  try {
+    content = readFileSync(learningsPath, 'utf-8');
+  } catch {
+    return;
+  }
+
+  // Strip YAML frontmatter if present
+  const withoutFrontmatter = content.replace(/^---[\s\S]*?---\n?/, '');
+
+  const milestoneNodeId = `milestone:${milestoneId}`;
+  const sourceFile = `milestones/${milestoneId}/${milestoneId}-LEARNINGS.md`;
+
+  // Parse each section: [sectionName, nodeType, idPrefix]
+  const sections: Array<[string, NodeType, string]> = [
+    ['Decisions', 'decision', 'decision'],
+    ['Lessons', 'lesson', 'lesson'],
+    ['Patterns', 'pattern', 'pattern'],
+    ['Surprises', 'lesson', 'surprise'],
+  ];
+
+  for (const [sectionName, nodeType, idPrefix] of sections) {
+    const sectionMatch = withoutFrontmatter.match(
+      new RegExp(`##\\s+${sectionName}\\s*\\n([\\s\\S]*?)(?=\\n##\\s|$)`, 'i'),
+    );
+    if (!sectionMatch) continue;
+
+    const sectionContent = sectionMatch[1];
+    parseLearningsSection(
+      sectionContent,
+      milestoneId,
+      idPrefix,
+      nodeType,
+      milestoneNodeId,
+      sourceFile,
+      nodes,
+      edges,
+    );
+  }
+}
+
+function parseLearningsSection(
+  sectionContent: string,
+  milestoneId: string,
+  idPrefix: string,
+  nodeType: NodeType,
+  milestoneNodeId: string,
+  sourceFile: string,
+  nodes: GraphNode[],
+  edges: GraphEdge[],
+): void {
+  // Each item is a bullet line starting with "- " followed by optional
+  // indented "Source: ..." line.
+  // We collect bullet items and their associated source attribution.
+  const lines = sectionContent.split('\n');
+  let itemIndex = 0;
+  let currentText: string | null = null;
+  let currentSource: string | null = null;
+
+  const flushItem = (): void => {
+    if (!currentText) return;
+    itemIndex += 1;
+    const nodeId = `${idPrefix}:${milestoneId}:${itemIndex}`;
+    const description = currentSource ? `${currentSource}` : undefined;
+
+    nodes.push({
+      id: nodeId,
+      label: currentText,
+      type: nodeType,
+      description,
+      confidence: 'EXTRACTED',
+      sourceFile,
+    });
+
+    // Edge: milestone relates_to this learning node
+    edges.push({
+      from: milestoneNodeId,
+      to: nodeId,
+      type: 'relates_to',
+      confidence: 'EXTRACTED',
+    });
+
+    currentText = null;
+    currentSource = null;
+  };
+
+  for (const line of lines) {
+    const bulletMatch = line.match(/^[-*]\s+(.+)/);
+    if (bulletMatch) {
+      flushItem();
+      currentText = bulletMatch[1].trim();
+      continue;
+    }
+
+    // Indented source attribution: "  Source: ..."
+    const sourceMatch = line.match(/^\s+Source:\s+(.+)/i);
+    if (sourceMatch && currentText !== null) {
+      currentSource = `Source: ${sourceMatch[1].trim()}`;
+      continue;
+    }
+
+    // Continuation of current item text (indented non-source line)
+    const continuationMatch = line.match(/^\s{2,}(.+)/);
+    if (continuationMatch && currentText !== null && currentSource === null) {
+      currentText += ' ' + continuationMatch[1].trim();
+    }
+  }
+
+  flushItem();
+}
+
+// ---------------------------------------------------------------------------
+// buildGraph
+// ---------------------------------------------------------------------------
+
+/**
+ * Build a KnowledgeGraph by parsing all .gsd/ artifacts.
+ *
+ * Parse errors in any single artifact are caught — the artifact is skipped
+ * and never causes buildGraph() to throw.
+ */
+export async function buildGraph(projectDir: string): Promise<KnowledgeGraph> {
+  const gsdRoot = resolveGsdRoot(resolve(projectDir));
+
+  const nodes: GraphNode[] = [];
+  const edges: GraphEdge[] = [];
+
+  // Each parser is wrapped so a crash in one never stops others
+  const parsers: Array<(g: string, n: GraphNode[], e: GraphEdge[]) => void> = [
+    parseStateFile,
+    parseKnowledgeFile,
+    parseMilestoneFiles,
+    parseLearningsFiles,
+  ];
+
+  for (const parser of parsers) {
+    try {
+      parser(gsdRoot, nodes, edges);
+    } catch {
+      // Parsing error — skip this artifact, mark as ambiguous
+      nodes.push({
+        id: `error:${parser.name}:${Date.now()}`,
+        label: `Parse error in ${parser.name}`,
+        type: 'concept',
+        confidence: 'AMBIGUOUS',
+      });
+    }
+  }
+
+  // Deduplicate nodes by id (keep first occurrence)
+  const seen = new Set<string>();
+  const dedupedNodes = nodes.filter((n) => {
+    if (seen.has(n.id)) return false;
+    seen.add(n.id);
+    return true;
+  });
+
+  return {
+    nodes: dedupedNodes,
+    edges,
+    builtAt: new Date().toISOString(),
+  };
+}
+
+// ---------------------------------------------------------------------------
+// writeGraph — atomic write via tmp + rename
+// ---------------------------------------------------------------------------
+
+/**
+ * Write the graph to .gsd/graphs/graph.json atomically.
+ *
+ * Writes to graph.tmp.json first, then renames to graph.json.
+ * Creates the graphs/ directory if it does not exist.
+ */
+export async function writeGraph(gsdRoot: string, graph: KnowledgeGraph): Promise<void> {
+  const dir = graphsDir(gsdRoot);
+  mkdirSync(dir, { recursive: true });
+
+  const tmp = graphTmpPath(gsdRoot);
+  const final = graphJsonPath(gsdRoot);
+
+  writeFileSync(tmp, JSON.stringify(graph, null, 2), 'utf-8');
+  renameSync(tmp, final);
+}
+
+// ---------------------------------------------------------------------------
+// writeSnapshot
+// ---------------------------------------------------------------------------
+
+/**
+ * Copy the current graph.json to .last-build-snapshot.json.
+ * Adds a snapshotAt timestamp to the copy.
+ */
+export async function writeSnapshot(gsdRoot: string): Promise<void> {
+  const src = graphJsonPath(gsdRoot);
+  if (!existsSync(src)) return;
+
+  const dir = graphsDir(gsdRoot);
+  mkdirSync(dir, { recursive: true });
+
+  const raw = readFileSync(src, 'utf-8');
+  let graph: KnowledgeGraph;
+  try {
+    graph = JSON.parse(raw) as KnowledgeGraph;
+  } catch {
+    return;
+  }
+  const snapshot = { ...graph, snapshotAt: new Date().toISOString() };
+
+  writeFileSync(snapshotPath(gsdRoot), JSON.stringify(snapshot, null, 2), 'utf-8');
+}
+
+// ---------------------------------------------------------------------------
+// graphStatus
+// ---------------------------------------------------------------------------
+
+/**
+ * Return status of the graph: whether it exists, its age, and whether it is stale.
+ * Stale means builtAt is older than 24 hours.
+ */
+export async function graphStatus(projectDir: string): Promise<GraphStatusResult> {
+  const gsdRoot = resolveGsdRoot(resolve(projectDir));
+  const graphPath = graphJsonPath(gsdRoot);
+
+  if (!existsSync(graphPath)) {
+    return { exists: false };
+  }
+
+  try {
+    const raw = readFileSync(graphPath, 'utf-8');
+    const graph = JSON.parse(raw) as KnowledgeGraph;
+
+    const builtAt = graph.builtAt;
+    const ageMs = Date.now() - new Date(builtAt).getTime();
+    const ageHours = ageMs / (1000 * 60 * 60);
+    const stale = ageHours > 24;
+
+    return {
+      exists: true,
+      lastBuild: builtAt,
+      nodeCount: graph.nodes.length,
+      edgeCount: graph.edges.length,
+      stale,
+      ageHours,
+    };
+  } catch {
+    return { exists: false };
+  }
+}
+
+// ---------------------------------------------------------------------------
+// applyBudget — trim edges to stay within token budget
+// ---------------------------------------------------------------------------
+
+/**
+ * Given a set of seed node IDs and the full graph, apply BFS to collect
+ * reachable nodes and edges. Trims AMBIGUOUS edges first, then INFERRED,
+ * stopping when the estimated token count drops within budget.
+ *
+ * Budget is a rough token estimate: 1 node ≈ 20 tokens, 1 edge ≈ 10 tokens.
+ */
+function applyBudget(
+  graph: KnowledgeGraph,
+  seedIds: Set<string>,
+  budget: number,
+): { nodes: GraphNode[]; edges: GraphEdge[] } {
+  // BFS to collect reachable nodes (start from seeds)
+  const reachable = new Set<string>(seedIds);
+  const queue = [...seedIds];
+
+  while (queue.length > 0) {
+    const current = queue.shift()!;
+    for (const edge of graph.edges) {
+      if (edge.from === current && !reachable.has(edge.to)) {
+        reachable.add(edge.to);
+        queue.push(edge.to);
+      }
+    }
+  }
+
+  let resultNodes = graph.nodes.filter((n) => reachable.has(n.id));
+  let resultEdges = graph.edges.filter(
+    (e) => reachable.has(e.from) && reachable.has(e.to),
+  );
+
+  // Estimate tokens and trim if over budget
+  // Trim AMBIGUOUS edges first, then INFERRED
+  const estimate = (): number =>
+    resultNodes.length * 20 + resultEdges.length * 10;
+
+  if (estimate() > budget) {
+    resultEdges = resultEdges.filter((e) => e.confidence !== 'AMBIGUOUS');
+  }
+  if (estimate() > budget) {
+    resultEdges = resultEdges.filter((e) => e.confidence !== 'INFERRED');
+  }
+  if (estimate() > budget) {
+    // Hard trim — keep only seed nodes and their EXTRACTED edges
+    const seedNodes = resultNodes.filter((n) => seedIds.has(n.id));
+    const seedEdges = resultEdges.filter(
+      (e) => seedIds.has(e.from) && e.confidence === 'EXTRACTED',
+    );
+    return { nodes: seedNodes, edges: seedEdges };
+  }
+
+  return { nodes: resultNodes, edges: resultEdges };
+}
+
+// ---------------------------------------------------------------------------
+// graphQuery
+// ---------------------------------------------------------------------------
+
+/**
+ * Query the graph for nodes matching a term (case-insensitive on label + description).
+ * BFS from seed nodes, applying budget trimming.
+ *
+ * Reads from the pre-built graph.json. Falls back to an empty result if no
+ * graph exists.
+ */
+export async function graphQuery(
+  projectDir: string,
+  term: string,
+  budget = 4000,
+): Promise<GraphQueryResult> {
+  const gsdRoot = resolveGsdRoot(resolve(projectDir));
+  const graphPath = graphJsonPath(gsdRoot);
+
+  if (!existsSync(graphPath)) {
+    return { nodes: [], edges: [], term, budget };
+  }
+
+  let graph: KnowledgeGraph;
+  try {
+    const raw = readFileSync(graphPath, 'utf-8');
+    graph = JSON.parse(raw) as KnowledgeGraph;
+  } catch {
+    return { nodes: [], edges: [], term, budget };
+  }
+
+  if (!term || term.trim() === '') {
+    // Empty term — return empty result
+    return { nodes: [], edges: [], term, budget };
+  }
+
+  const lower = term.toLowerCase();
+
+  // Find seed nodes that match the term
+  const seedIds = new Set<string>(
+    graph.nodes
+      .filter((n) => {
+        const labelMatch = n.label.toLowerCase().includes(lower);
+        const descMatch = n.description?.toLowerCase().includes(lower) ?? false;
+        return labelMatch || descMatch;
+      })
+      .map((n) => n.id),
+  );
+
+  if (seedIds.size === 0) {
+    return { nodes: [], edges: [], term, budget };
+  }
+
+  const result = applyBudget(graph, seedIds, budget);
+  return { ...result, term, budget };
+}
+
+// ---------------------------------------------------------------------------
+// graphDiff
+// ---------------------------------------------------------------------------
+
+/**
+ * Compare the current graph.json with .last-build-snapshot.json.
+ * Returns added/removed/changed nodes and added/removed edges.
+ *
+ * If no snapshot exists, returns empty diff arrays.
+ */
+export async function graphDiff(projectDir: string): Promise<GraphDiffResult> {
+  const gsdRoot = resolveGsdRoot(resolve(projectDir));
+  const empty: GraphDiffResult = {
+    nodes: { added: [], removed: [], changed: [] },
+    edges: { added: [], removed: [] },
+  };
+
+  const graphPath = graphJsonPath(gsdRoot);
+  const snap = snapshotPath(gsdRoot);
+
+  if (!existsSync(graphPath)) return empty;
+  if (!existsSync(snap)) return empty;
+
+  let current: KnowledgeGraph;
+  let snapshot: KnowledgeGraph;
+
+  try {
+    current = JSON.parse(readFileSync(graphPath, 'utf-8')) as KnowledgeGraph;
+  } catch {
+    return empty;
+  }
+
+  try {
+    snapshot = JSON.parse(readFileSync(snap, 'utf-8')) as KnowledgeGraph;
+  } catch {
+    return empty;
+  }
+
+  const currentNodeIds = new Set(current.nodes.map((n) => n.id));
+  const snapshotNodeIds = new Set(snapshot.nodes.map((n) => n.id));
+
+  const added = current.nodes.filter((n) => !snapshotNodeIds.has(n.id)).map((n) => n.id);
+  const removed = snapshot.nodes.filter((n) => !currentNodeIds.has(n.id)).map((n) => n.id);
+
+  // Changed: same id but different label or description
+  const snapshotNodeMap = new Map(snapshot.nodes.map((n) => [n.id, n]));
+  const changed = current.nodes
+    .filter((n) => {
+      const snap = snapshotNodeMap.get(n.id);
+      if (!snap) return false;
+      return n.label !== snap.label || n.description !== snap.description;
+    })
+    .map((n) => n.id);
+
+  // Edges — compare by string key "from->to:type"
+  const edgeKey = (e: GraphEdge): string => `${e.from}->${e.to}:${e.type}`;
+  const currentEdgeKeys = new Set(current.edges.map(edgeKey));
+  const snapshotEdgeKeys = new Set(snapshot.edges.map(edgeKey));
+
+  const edgesAdded = current.edges.filter((e) => !snapshotEdgeKeys.has(edgeKey(e))).map(edgeKey);
+  const edgesRemoved = snapshot.edges.filter((e) => !currentEdgeKeys.has(edgeKey(e))).map(edgeKey);
+
+  return {
+    nodes: { added, removed, changed },
+    edges: { added: edgesAdded, removed: edgesRemoved },
+  };
+}