gsd-pi 2.67.0-dev.a5b1d8f → 2.67.0-dev.fe39184

package/src/resources/extensions/gsd/bootstrap/query-tools.ts

@@ -2,8 +2,8 @@
 
 import { Type } from "@sinclair/typebox";
 import type { ExtensionAPI } from "@gsd/pi-coding-agent";
-
-import { logWarning } from "../workflow-logger.js";
+import { ensureDbOpen } from "./dynamic-tools.js";
+import { executeMilestoneStatus } from "../tools/workflow-tool-executors.js";
 
 export function registerQueryTools(pi: ExtensionAPI): void {
   pi.registerTool({
@@ -21,79 +21,14 @@ export function registerQueryTools(pi: ExtensionAPI): void {
       milestoneId: Type.String({ description: "Milestone ID to query (e.g. M001)" }),
     }),
     async execute(_toolCallId, params, _signal, _onUpdate, _ctx) {
-      try {
-        // Open the DB if not already open — safe for read-only use since
-        // ensureDbOpen() only creates/migrates when .gsd/ has content (#3644).
-        const { ensureDbOpen } = await import("./dynamic-tools.js");
-        const dbAvailable = await ensureDbOpen();
-        const {
-          getMilestone,
-          getSliceStatusSummary,
-          getSliceTaskCounts,
-          _getAdapter,
-        } = await import("../gsd-db.js");
-
-        if (!dbAvailable) {
-          return {
-            content: [{ type: "text" as const, text: "Error: GSD database is not available." }],
-            details: { operation: "milestone_status", error: "db_unavailable" } as any,
-          };
-        }
-
-        // Wrap all reads in a single transaction for snapshot consistency.
-        // SQLite WAL mode guarantees reads within a transaction see a single
-        // consistent snapshot, preventing torn reads from concurrent writes.
-        const adapter = _getAdapter()!;
-        adapter.exec("BEGIN");  // eslint-disable-line -- SQLite exec, not child_process
-        try {
-          const milestone = getMilestone(params.milestoneId);
-          if (!milestone) {
-            adapter.exec("COMMIT");  // eslint-disable-line
-            return {
-              content: [{ type: "text" as const, text: `Milestone ${params.milestoneId} not found in database.` }],
-              details: { operation: "milestone_status", milestoneId: params.milestoneId, found: false } as any,
-            };
-          }
-
-          const sliceStatuses = getSliceStatusSummary(params.milestoneId);
-
-          const slices = sliceStatuses.map((s) => {
-            const counts = getSliceTaskCounts(params.milestoneId, s.id);
-            return {
-              id: s.id,
-              status: s.status,
-              taskCounts: counts,
-            };
-          });
-
-          adapter.exec("COMMIT");  // eslint-disable-line
-
-          const result = {
-            milestoneId: milestone.id,
-            title: milestone.title,
-            status: milestone.status,
-            createdAt: milestone.created_at,
-            completedAt: milestone.completed_at,
-            sliceCount: slices.length,
-            slices,
-          };
-
-          return {
-            content: [{ type: "text" as const, text: JSON.stringify(result, null, 2) }],
-            details: { operation: "milestone_status", milestoneId: milestone.id, sliceCount: slices.length } as any,
-          };
-        } catch (txErr) {
-          try { adapter.exec("ROLLBACK"); } catch { /* swallow */ }  // eslint-disable-line
-          throw txErr;
-        }
-      } catch (err) {
-        const msg = err instanceof Error ? err.message : String(err);
-        logWarning("tool", `gsd_milestone_status tool failed: ${msg}`);
+      const dbAvailable = await ensureDbOpen();
+      if (!dbAvailable) {
         return {
-          content: [{ type: "text" as const, text: `Error querying milestone status: ${msg}` }],
-          details: { operation: "milestone_status", error: msg } as any,
+          content: [{ type: "text", text: "Error: GSD database is not available. Cannot read milestone status." }],
+          details: { operation: "milestone_status", error: "db_unavailable" },
         };
       }
+      return executeMilestoneStatus(params);
     },
   });
 }

package/src/resources/extensions/gsd/bootstrap/write-gate.ts

@@ -1,3 +1,6 @@
+import { existsSync, mkdirSync, readFileSync, renameSync, unlinkSync, writeFileSync } from "node:fs";
+import { join } from "node:path";
+
 const MILESTONE_CONTEXT_RE = /M\d+(?:-[a-z0-9]{6})?-CONTEXT\.md$/;
 const CONTEXT_MILESTONE_RE = /(?:^|[/\\])(M\d+(?:-[a-z0-9]{6})?)-CONTEXT\.md$/i;
 const DEPTH_VERIFICATION_MILESTONE_RE = /depth_verification[_-](M\d+(?:-[a-z0-9]{6})?)/i;
@@ -65,6 +68,69 @@ const GATE_SAFE_TOOLS = new Set([
   "search_and_read",
 ]);
 
+export interface WriteGateSnapshot {
+  verifiedDepthMilestones: string[];
+  activeQueuePhase: boolean;
+  pendingGateId: string | null;
+}
+
+function shouldPersistWriteGateSnapshot(env: NodeJS.ProcessEnv = process.env): boolean {
+  return env.GSD_PERSIST_WRITE_GATE_STATE === "1";
+}
+
+function writeGateSnapshotPath(basePath: string = process.cwd()): string {
+  return join(basePath, ".gsd", "runtime", "write-gate-state.json");
+}
+
+function currentWriteGateSnapshot(): WriteGateSnapshot {
+  return {
+    verifiedDepthMilestones: [...verifiedDepthMilestones].sort(),
+    activeQueuePhase,
+    pendingGateId,
+  };
+}
+
+function persistWriteGateSnapshot(basePath: string = process.cwd()): void {
+  if (!shouldPersistWriteGateSnapshot()) return;
+  const path = writeGateSnapshotPath(basePath);
+  mkdirSync(join(basePath, ".gsd", "runtime"), { recursive: true });
+  const tempPath = `${path}.tmp`;
+  writeFileSync(tempPath, JSON.stringify(currentWriteGateSnapshot(), null, 2), "utf-8");
+  renameSync(tempPath, path);
+}
+
+function clearPersistedWriteGateSnapshot(basePath: string = process.cwd()): void {
+  if (!shouldPersistWriteGateSnapshot()) return;
+  const path = writeGateSnapshotPath(basePath);
+  try {
+    unlinkSync(path);
+  } catch {
+    // swallow
+  }
+}
+
+function normalizeWriteGateSnapshot(value: unknown): WriteGateSnapshot {
+  const record = value && typeof value === "object" ? value as Record<string, unknown> : {};
+  const verified = Array.isArray(record.verifiedDepthMilestones)
+    ? record.verifiedDepthMilestones.filter((item): item is string => typeof item === "string")
+    : [];
+  return {
+    verifiedDepthMilestones: [...new Set(verified)].sort(),
+    activeQueuePhase: record.activeQueuePhase === true,
+    pendingGateId: typeof record.pendingGateId === "string" ? record.pendingGateId : null,
+  };
+}
+
+export function loadWriteGateSnapshot(basePath: string = process.cwd()): WriteGateSnapshot {
+  const path = writeGateSnapshotPath(basePath);
+  if (!existsSync(path)) return currentWriteGateSnapshot();
+  try {
+    return normalizeWriteGateSnapshot(JSON.parse(readFileSync(path, "utf-8")));
+  } catch {
+    return currentWriteGateSnapshot();
+  }
+}
+
 export function isDepthVerified(): boolean {
   return verifiedDepthMilestones.size > 0;
 }
@@ -77,28 +143,40 @@ export function isMilestoneDepthVerified(milestoneId: string | null | undefined)
   return verifiedDepthMilestones.has(milestoneId);
 }
 
+export function isMilestoneDepthVerifiedInSnapshot(
+  snapshot: WriteGateSnapshot,
+  milestoneId: string | null | undefined,
+): boolean {
+  if (!milestoneId) return false;
+  return snapshot.verifiedDepthMilestones.includes(milestoneId);
+}
+
 export function isQueuePhaseActive(): boolean {
   return activeQueuePhase;
 }
 
 export function setQueuePhaseActive(active: boolean): void {
   activeQueuePhase = active;
+  persistWriteGateSnapshot();
 }
 
 export function resetWriteGateState(): void {
   verifiedDepthMilestones.clear();
   pendingGateId = null;
+  persistWriteGateSnapshot();
 }
 
 export function clearDiscussionFlowState(): void {
   verifiedDepthMilestones.clear();
   activeQueuePhase = false;
   pendingGateId = null;
+  clearPersistedWriteGateSnapshot();
 }
 
-export function markDepthVerified(milestoneId?: string | null): void {
+export function markDepthVerified(milestoneId?: string | null, basePath: string = process.cwd()): void {
   if (!milestoneId) return;
   verifiedDepthMilestones.add(milestoneId);
+  persistWriteGateSnapshot(basePath);
 }
 
 /**
@@ -130,6 +208,7 @@ function extractContextMilestoneId(inputPath: string): string | null {
  */
 export function setPendingGate(gateId: string): void {
   pendingGateId = gateId;
+  persistWriteGateSnapshot();
 }
 
 /**
@@ -137,6 +216,7 @@ export function setPendingGate(gateId: string): void {
  */
 export function clearPendingGate(): void {
   pendingGateId = null;
+  persistWriteGateSnapshot();
 }
 
 /**
@@ -154,11 +234,20 @@ export function getPendingGate(): string | null {
  * Read-only tools and ask_user_questions itself are always allowed.
  */
 export function shouldBlockPendingGate(
+  toolName: string,
+  milestoneId: string | null,
+  queuePhaseActive?: boolean,
+): { block: boolean; reason?: string } {
+  return shouldBlockPendingGateInSnapshot(currentWriteGateSnapshot(), toolName, milestoneId, queuePhaseActive);
+}
+
+export function shouldBlockPendingGateInSnapshot(
+  snapshot: WriteGateSnapshot,
   toolName: string,
   _milestoneId: string | null,
   _queuePhaseActive?: boolean,
 ): { block: boolean; reason?: string } {
-  if (!pendingGateId) return { block: false };
+  if (!snapshot.pendingGateId) return { block: false };
 
   if (GATE_SAFE_TOOLS.has(toolName)) return { block: false };
 
@@ -168,7 +257,7 @@ export function shouldBlockPendingGate(
   return {
     block: true,
     reason: [
-      `HARD BLOCK: Discussion gate "${pendingGateId}" has not been confirmed by the user.`,
+      `HARD BLOCK: Discussion gate "${snapshot.pendingGateId}" has not been confirmed by the user.`,
       `You MUST re-call ask_user_questions with the gate question before making any other tool calls.`,
       `If the previous ask_user_questions call failed, errored, was cancelled, or the user's response`,
       `did not match a provided option, you MUST re-ask — never rationalize past the block.`,
@@ -182,11 +271,20 @@ export function shouldBlockPendingGate(
  * Read-only bash commands are allowed; mutating commands are blocked.
  */
 export function shouldBlockPendingGateBash(
+  command: string,
+  milestoneId: string | null,
+  queuePhaseActive?: boolean,
+): { block: boolean; reason?: string } {
+  return shouldBlockPendingGateBashInSnapshot(currentWriteGateSnapshot(), command, milestoneId, queuePhaseActive);
+}
+
+export function shouldBlockPendingGateBashInSnapshot(
+  snapshot: WriteGateSnapshot,
   command: string,
   _milestoneId: string | null,
   _queuePhaseActive?: boolean,
 ): { block: boolean; reason?: string } {
-  if (!pendingGateId) return { block: false };
+  if (!snapshot.pendingGateId) return { block: false };
 
   // Allow read-only bash commands
   if (BASH_READ_ONLY_RE.test(command)) return { block: false };
@@ -194,7 +292,7 @@ export function shouldBlockPendingGateBash(
   return {
     block: true,
     reason: [
-      `HARD BLOCK: Discussion gate "${pendingGateId}" has not been confirmed by the user.`,
+      `HARD BLOCK: Discussion gate "${snapshot.pendingGateId}" has not been confirmed by the user.`,
       `You MUST re-call ask_user_questions with the gate question before running mutating commands.`,
       `If the previous ask_user_questions call failed, errored, was cancelled, or the user's response`,
       `did not match a provided option, you MUST re-ask — never rationalize past the block.`,
@@ -275,6 +373,15 @@ export function shouldBlockContextArtifactSave(
   artifactType: string,
   milestoneId: string | null,
   sliceId?: string | null,
+): { block: boolean; reason?: string } {
+  return shouldBlockContextArtifactSaveInSnapshot(currentWriteGateSnapshot(), artifactType, milestoneId, sliceId);
+}
+
+export function shouldBlockContextArtifactSaveInSnapshot(
+  snapshot: WriteGateSnapshot,
+  artifactType: string,
+  milestoneId: string | null,
+  sliceId?: string | null,
 ): { block: boolean; reason?: string } {
   if (artifactType !== "CONTEXT") return { block: false };
   if (sliceId) return { block: false };
@@ -287,7 +394,7 @@ export function shouldBlockContextArtifactSave(
       ].join(" "),
     };
   }
-  if (isMilestoneDepthVerified(milestoneId)) return { block: false };
+  if (isMilestoneDepthVerifiedInSnapshot(snapshot, milestoneId)) return { block: false };
 
   return {
     block: true,
@@ -317,6 +424,15 @@ export function shouldBlockQueueExecution(
   toolName: string,
   input: string,
   queuePhaseActive: boolean,
+): { block: boolean; reason?: string } {
+  return shouldBlockQueueExecutionInSnapshot(currentWriteGateSnapshot(), toolName, input, queuePhaseActive);
+}
+
+export function shouldBlockQueueExecutionInSnapshot(
+  snapshot: WriteGateSnapshot,
+  toolName: string,
+  input: string,
+  queuePhaseActive: boolean = snapshot.activeQueuePhase,
 ): { block: boolean; reason?: string } {
   if (!queuePhaseActive) return { block: false };
 

package/src/resources/extensions/gsd/commands/catalog.ts

@@ -70,7 +70,7 @@ export const TOP_LEVEL_SUBCOMMANDS: readonly GsdCommandDefinition[] = [
   { cmd: "templates", desc: "List available workflow templates" },
   { cmd: "extensions", desc: "Manage extensions (list, enable, disable, info)" },
   { cmd: "fast", desc: "Toggle OpenAI service tier (on/off/flex/status)" },
-  { cmd: "mcp", desc: "MCP server status and connectivity check (status, check <server>)" },
+  { cmd: "mcp", desc: "MCP server status, connectivity, and local config bootstrap (status, check, init)" },
   { cmd: "rethink", desc: "Conversational project reorganization — reorder, park, discard, add milestones" },
   { cmd: "workflow", desc: "Custom workflow lifecycle (new, run, list, validate, pause, resume)" },
   { cmd: "codebase", desc: "Generate, refresh, and inspect the codebase map cache (.gsd/CODEBASE.md)" },
@@ -201,6 +201,7 @@ const NESTED_COMPLETIONS: CompletionMap = {
   mcp: [
     { cmd: "status", desc: "Show all MCP server statuses (default)" },
     { cmd: "check", desc: "Detailed status for a specific server" },
+    { cmd: "init", desc: "Write .mcp.json for the local GSD workflow MCP server" },
   ],
   doctor: [
     { cmd: "fix", desc: "Auto-fix detected issues" },

package/src/resources/extensions/gsd/commands/handlers/core.ts

@@ -60,7 +60,7 @@ export function showHelp(ctx: ExtensionCommandContext): void {
     "  /gsd hooks          Show post-unit hook configuration",
     "  /gsd extensions     Manage extensions  [list|enable|disable|info]",
     "  /gsd fast           Toggle OpenAI service tier  [on|off|flex|status]",
-    "  /gsd mcp            MCP server status and connectivity  [status|check <server>]",
+    "  /gsd mcp            MCP server status and connectivity  [status|check <server>|init [dir]]",
     "",
     "MAINTENANCE",
     "  /gsd doctor         Diagnose and repair .gsd/ state  [audit|fix|heal] [scope]",
@@ -194,6 +194,56 @@ function sortModelsForSelection(models: Model<any>[], currentModel: Model<any> |
   });
 }
 
+function buildProviderModelGroups(
+  models: Model<any>[],
+  currentModel: Model<any> | undefined,
+): Map<string, Model<any>[]> {
+  const byProvider = new Map<string, Model<any>[]>();
+
+  for (const model of sortModelsForSelection(models, currentModel)) {
+    let group = byProvider.get(model.provider);
+    if (!group) {
+      group = [];
+      byProvider.set(model.provider, group);
+    }
+    group.push(model);
+  }
+  return byProvider;
+}
+
+async function selectModelByProvider(
+  title: string,
+  models: Model<any>[],
+  ctx: ExtensionCommandContext,
+  currentModel: Model<any> | undefined,
+): Promise<Model<any> | undefined> {
+  const byProvider = buildProviderModelGroups(models, currentModel);
+  const providerOptions = Array.from(byProvider.entries()).map(([provider, group]) =>
+    `${provider} (${group.length} model${group.length === 1 ? "" : "s"})`,
+  );
+  providerOptions.push("(cancel)");
+
+  const providerChoice = await ctx.ui.select(`${title} — choose provider:`, providerOptions);
+  if (!providerChoice || typeof providerChoice !== "string" || providerChoice === "(cancel)") return undefined;
+
+  const providerName = providerChoice.replace(/ \(\d+ models?\)$/, "");
+  const providerModels = byProvider.get(providerName);
+  if (!providerModels || providerModels.length === 0) return undefined;
+
+  const optionToModel = new Map<string, Model<any>>();
+  const modelOptions = providerModels.map((model) => {
+    const isCurrent = currentModel && model.provider === currentModel.provider && model.id === currentModel.id;
+    const label = `${isCurrent ? "* " : ""}${model.id}`;
+    optionToModel.set(label, model);
+    return label;
+  });
+  modelOptions.push("(cancel)");
+
+  const modelChoice = await ctx.ui.select(`${title} — ${providerName}:`, modelOptions);
+  if (!modelChoice || typeof modelChoice !== "string" || modelChoice === "(cancel)") return undefined;
+  return optionToModel.get(modelChoice);
+}
+
 async function resolveRequestedModel(
   query: string,
   ctx: ExtensionCommandContext,
@@ -211,19 +261,7 @@ async function resolveRequestedModel(
 
   if (partialMatches.length === 1) return partialMatches[0];
   if (partialMatches.length === 0 || !ctx.hasUI) return undefined;
-
-  const sorted = sortModelsForSelection(partialMatches, ctx.model);
-  const optionToModel = new Map<string, Model<any>>();
-  const options = sorted.map((model) => {
-    const label = `${model.provider}/${model.id}`;
-    optionToModel.set(label, model);
-    return label;
-  });
-  options.push("(cancel)");
-
-  const choice = await ctx.ui.select(`Multiple models match "${query}" — choose one:`, options);
-  if (!choice || typeof choice !== "string" || choice === "(cancel)") return undefined;
-  return optionToModel.get(choice);
+  return selectModelByProvider(`Multiple models match "${query}"`, partialMatches, ctx, ctx.model);
 }
 
 async function handleModel(trimmedArgs: string, ctx: ExtensionCommandContext, pi: ExtensionAPI | undefined): Promise<void> {
@@ -247,18 +285,7 @@ async function handleModel(trimmedArgs: string, ctx: ExtensionCommandContext, pi
       return;
     }
 
-    const optionToModel = new Map<string, Model<any>>();
-    const options = sortModelsForSelection(availableModels, ctx.model).map((model) => {
-      const isCurrent = ctx.model && model.provider === ctx.model.provider && model.id === ctx.model.id;
-      const label = `${isCurrent ? "* " : ""}${model.provider}/${model.id}`;
-      optionToModel.set(label, model);
-      return label;
-    });
-    options.push("(cancel)");
-
-    const choice = await ctx.ui.select("Select session model:", options);
-    if (!choice || typeof choice !== "string" || choice === "(cancel)") return;
-    targetModel = optionToModel.get(choice);
+    targetModel = await selectModelByProvider("Select session model:", availableModels, ctx, ctx.model);
   } else {
     targetModel = await resolveRequestedModel(trimmed, ctx);
   }

package/src/resources/extensions/gsd/commands/index.ts

@@ -8,7 +8,13 @@ export function registerGSDCommand(pi: ExtensionAPI): void {
     getArgumentCompletions: getGsdArgumentCompletions,
     handler: async (args: string, ctx: ExtensionCommandContext) => {
       const { handleGSDCommand } = await import("./dispatcher.js");
-      await handleGSDCommand(args, ctx, pi);
+      const { setStderrLoggingEnabled } = await import("../workflow-logger.js");
+      const previousStderrSetting = setStderrLoggingEnabled(false);
+      try {
+        await handleGSDCommand(args, ctx, pi);
+      } finally {
+        setStderrLoggingEnabled(previousStderrSetting);
+      }
     },
   });
 }

package/src/resources/extensions/gsd/commands-mcp-status.ts

@@ -7,12 +7,15 @@
  *   /gsd mcp             — Overview of all servers (alias: /gsd mcp status)
  *   /gsd mcp status      — Same as bare /gsd mcp
  *   /gsd mcp check <srv> — Detailed status for a specific server
+ *   /gsd mcp init [dir]  — Write project-local GSD workflow MCP config
  */
 
 import type { ExtensionCommandContext } from "@gsd/pi-coding-agent";
 
 import { existsSync, readFileSync } from "node:fs";
-import { join } from "node:path";
+import { join, resolve } from "node:path";
+
+import { ensureProjectWorkflowMcpConfig } from "./mcp-project-config.js";
 
 // ─── Types ──────────────────────────────────────────────────────────────────
 
@@ -28,6 +31,28 @@ export interface McpServerDetail extends McpServerStatus {
   tools: string[];
 }
 
+export function formatMcpInitResult(
+  status: "created" | "updated" | "unchanged",
+  configPath: string,
+  targetPath: string,
+): string {
+  const summary =
+    status === "created"
+      ? "Created project MCP config."
+      : status === "updated"
+        ? "Updated project MCP config."
+        : "Project MCP config is already up to date.";
+
+  return [
+    summary,
+    "",
+    `Project: ${targetPath}`,
+    `Config:   ${configPath}`,
+    "",
+    "Claude Code can now load the GSD workflow MCP server from this folder.",
+  ].join("\n");
+}
+
 // ─── Config reader (standalone — does not import mcp-client internals) ──────
 
 interface McpServerRawConfig {
@@ -94,6 +119,7 @@ export function formatMcpStatusReport(servers: McpServerStatus[]): string {
       "No MCP servers configured.",
       "",
       "Add servers to .mcp.json or .gsd/mcp.json to enable MCP integrations.",
+      "Tip: run /gsd mcp init . to write the local GSD workflow MCP config.",
       "See: https://modelcontextprotocol.io/quickstart",
     ].join("\n");
   }
@@ -153,12 +179,31 @@ export async function handleMcpStatus(
   args: string,
   ctx: ExtensionCommandContext,
 ): Promise<void> {
-  const trimmed = args.trim().toLowerCase();
+  const trimmed = args.trim();
+  const lowered = trimmed.toLowerCase();
   const configs = readMcpConfigs();
 
+  // /gsd mcp init [dir]
+  if (!lowered || lowered === "status") {
+    // handled below
+  } else if (lowered === "init" || lowered.startsWith("init ")) {
+    const rawPath = trimmed.slice("init".length).trim();
+    const targetPath = resolve(rawPath || ".");
+    try {
+      const result = ensureProjectWorkflowMcpConfig(targetPath);
+      ctx.ui.notify(formatMcpInitResult(result.status, result.configPath, targetPath), "info");
+    } catch (err) {
+      ctx.ui.notify(
+        `Failed to prepare MCP config for ${targetPath}: ${err instanceof Error ? err.message : String(err)}`,
+        "error",
+      );
+    }
+    return;
+  }
+
   // /gsd mcp check <server>
-  if (trimmed.startsWith("check ")) {
-    const serverName = args.trim().slice("check ".length).trim();
+  if (lowered.startsWith("check ")) {
+    const serverName = trimmed.slice("check ".length).trim();
     const config = configs.find((c) => c.name === serverName);
     if (!config) {
       const available = configs.map((c) => c.name).join(", ") || "(none)";
@@ -202,7 +247,7 @@ export async function handleMcpStatus(
   }
 
   // /gsd mcp or /gsd mcp status
-  if (!trimmed || trimmed === "status") {
+  if (!lowered || lowered === "status") {
     // Build status for each server
     const statuses: McpServerStatus[] = [];
 
@@ -239,9 +284,10 @@ export async function handleMcpStatus(
 
   // Unknown subcommand
   ctx.ui.notify(
-    "Usage: /gsd mcp [status|check <server>]\n\n" +
+    "Usage: /gsd mcp [status|check <server>|init [dir]]\n\n" +
     "  status           Show all MCP server statuses (default)\n" +
-    "  check <server>   Detailed status for a specific server",
+    "  check <server>   Detailed status for a specific server\n" +
+    "  init [dir]       Write .mcp.json for the local GSD workflow MCP server",
     "warning",
   );
 }

package/src/resources/extensions/gsd/guided-flow.ts

@@ -40,6 +40,10 @@ import { findMilestoneIds, nextMilestoneId, reserveMilestoneId, getReservedMiles
 import { parkMilestone, discardMilestone } from "./milestone-actions.js";
 import { selectAndApplyModel } from "./auto-model-selection.js";
 import { DISCUSS_TOOLS_ALLOWLIST } from "./constants.js";
+import {
+  getWorkflowTransportSupportError,
+  getRequiredWorkflowToolsForGuidedUnit,
+} from "./workflow-mcp.js";
 import {
   runPreparation,
   formatCodebaseBrief,
@@ -318,6 +322,26 @@ async function dispatchWorkflow(
         routing: result.routing,
       });
     }
+
+    const compatibilityError = getWorkflowTransportSupportError(
+      result.appliedModel?.provider ?? ctx.model?.provider,
+      getRequiredWorkflowToolsForGuidedUnit(unitType),
+      {
+        projectRoot: process.cwd(),
+        surface: "guided flow",
+        unitType,
+        authMode: result.appliedModel?.provider
+          ? ctx.modelRegistry.getProviderAuthMode(result.appliedModel.provider)
+          : ctx.model?.provider
+            ? ctx.modelRegistry.getProviderAuthMode(ctx.model.provider)
+            : undefined,
+        baseUrl: result.appliedModel?.baseUrl ?? ctx.model?.baseUrl,
+      },
+    );
+    if (compatibilityError) {
+      ctx.ui.notify(compatibilityError, "error");
+      return;
+    }
   }
 
   // Scope tools for discuss flows (#2949).

package/src/resources/extensions/gsd/init-wizard.ts

@@ -235,6 +235,16 @@ export async function showProjectInit(
   // ── Step 9: Bootstrap .gsd/ ────────────────────────────────────────────────
   bootstrapGsdDirectory(basePath, prefs, signals);
 
+  // Initialize SQLite database so GSD starts in full-capability mode (#3880).
+  // Without this, isDbAvailable() returns false and GSD enters degraded
+  // markdown-only mode until a tool handler happens to call ensureDbOpen().
+  try {
+    const { ensureDbOpen } = await import("./bootstrap/dynamic-tools.js");
+    await ensureDbOpen(basePath);
+  } catch {
+    // Non-fatal — DB creation failure should not block project init
+  }
+
   // Ensure .gitignore
   ensureGitignore(basePath);
   untrackRuntimeFiles(basePath);
@@ -250,6 +260,35 @@ export async function showProjectInit(
     // Non-fatal — codebase map generation failure should never block project init
   }
 
+  // Write initial STATE.md so it exists before the first /gsd invocation.
+  // The explicit /gsd init path (ops.ts) returns without entering showSmartEntry(),
+  // which would otherwise generate STATE.md at guided-flow.ts:1358.
+  try {
+    const { deriveState } = await import("./state.js");
+    const { buildStateMarkdown } = await import("./doctor.js");
+    const { saveFile } = await import("./files.js");
+    const { resolveGsdRootFile } = await import("./paths.js");
+    const state = await deriveState(basePath);
+    await saveFile(resolveGsdRootFile(basePath, "STATE"), buildStateMarkdown(state));
+  } catch {
+    // Non-fatal — STATE.md will be regenerated on next /gsd invocation
+  }
+
+  if (ctx.model?.provider === "claude-code") {
+    try {
+      const { ensureProjectWorkflowMcpConfig } = await import("./mcp-project-config.js");
+      const result = ensureProjectWorkflowMcpConfig(basePath);
+      if (result.status !== "unchanged") {
+        ctx.ui.notify(`Claude Code MCP prepared at ${result.configPath}`, "info");
+      }
+    } catch (err) {
+      ctx.ui.notify(
+        `Claude Code MCP prep failed: ${err instanceof Error ? err.message : String(err)}`,
+        "warning",
+      );
+    }
+  }
+
   ctx.ui.notify("GSD initialized. Starting your first milestone...", "info");
 
   return { completed: true, bootstrapped: true };
@@ -433,6 +472,7 @@ function bootstrapGsdDirectory(
 
   const gsd = gsdRoot(basePath);
   mkdirSync(join(gsd, "milestones"), { recursive: true });
+  mkdirSync(join(gsd, "runtime"), { recursive: true });
 
   // Write PREFERENCES.md from wizard answers
   const preferencesContent = buildPreferencesFile(prefs);