gsd-pi 2.48.0-dev.ced2eca → 2.49.0-dev.9e177e9

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (249) hide show
  1. package/dist/headless-ui.js +12 -2
  2. package/dist/headless.js +29 -13
  3. package/dist/resources/extensions/gsd/auto/infra-errors.js +1 -0
  4. package/dist/resources/extensions/gsd/auto/phases.js +11 -11
  5. package/dist/resources/extensions/gsd/auto/resolve.js +2 -2
  6. package/dist/resources/extensions/gsd/auto/run-unit.js +2 -2
  7. package/dist/resources/extensions/gsd/auto/session.js +4 -0
  8. package/dist/resources/extensions/gsd/auto-artifact-paths.js +8 -10
  9. package/dist/resources/extensions/gsd/auto-dashboard.js +6 -3
  10. package/dist/resources/extensions/gsd/auto-dispatch.js +33 -21
  11. package/dist/resources/extensions/gsd/auto-post-unit.js +17 -24
  12. package/dist/resources/extensions/gsd/auto-prompts.js +102 -21
  13. package/dist/resources/extensions/gsd/auto-recovery.js +62 -184
  14. package/dist/resources/extensions/gsd/auto-start.js +4 -31
  15. package/dist/resources/extensions/gsd/auto-timers.js +2 -2
  16. package/dist/resources/extensions/gsd/auto-verification.js +4 -7
  17. package/dist/resources/extensions/gsd/auto-worktree.js +257 -113
  18. package/dist/resources/extensions/gsd/auto.js +7 -5
  19. package/dist/resources/extensions/gsd/bootstrap/db-tools.js +89 -0
  20. package/dist/resources/extensions/gsd/bootstrap/register-hooks.js +8 -1
  21. package/dist/resources/extensions/gsd/branch-patterns.js +13 -0
  22. package/dist/resources/extensions/gsd/doctor-checks.js +5 -1234
  23. package/dist/resources/extensions/gsd/doctor-engine-checks.js +168 -0
  24. package/dist/resources/extensions/gsd/doctor-environment.js +28 -7
  25. package/dist/resources/extensions/gsd/doctor-git-checks.js +405 -0
  26. package/dist/resources/extensions/gsd/doctor-global-checks.js +74 -0
  27. package/dist/resources/extensions/gsd/doctor-runtime-checks.js +600 -0
  28. package/dist/resources/extensions/gsd/doctor.js +9 -1
  29. package/dist/resources/extensions/gsd/extension-manifest.json +1 -1
  30. package/dist/resources/extensions/gsd/git-service.js +9 -10
  31. package/dist/resources/extensions/gsd/gsd-db.js +124 -1
  32. package/dist/resources/extensions/gsd/guided-flow-queue.js +10 -11
  33. package/dist/resources/extensions/gsd/markdown-renderer.js +33 -5
  34. package/dist/resources/extensions/gsd/preferences-types.js +2 -1
  35. package/dist/resources/extensions/gsd/preferences-validation.js +39 -0
  36. package/dist/resources/extensions/gsd/prompts/complete-milestone.md +27 -8
  37. package/dist/resources/extensions/gsd/prompts/complete-slice.md +9 -8
  38. package/dist/resources/extensions/gsd/prompts/execute-task.md +16 -13
  39. package/dist/resources/extensions/gsd/prompts/forensics.md +12 -5
  40. package/dist/resources/extensions/gsd/prompts/gate-evaluate.md +32 -0
  41. package/dist/resources/extensions/gsd/prompts/guided-complete-slice.md +1 -1
  42. package/dist/resources/extensions/gsd/prompts/guided-execute-task.md +1 -1
  43. package/dist/resources/extensions/gsd/prompts/guided-plan-milestone.md +1 -1
  44. package/dist/resources/extensions/gsd/prompts/guided-plan-slice.md +1 -1
  45. package/dist/resources/extensions/gsd/prompts/plan-milestone.md +1 -1
  46. package/dist/resources/extensions/gsd/prompts/plan-slice.md +8 -3
  47. package/dist/resources/extensions/gsd/prompts/reassess-roadmap.md +3 -0
  48. package/dist/resources/extensions/gsd/prompts/replan-slice.md +1 -1
  49. package/dist/resources/extensions/gsd/repo-identity.js +29 -0
  50. package/dist/resources/extensions/gsd/roadmap-slices.js +2 -2
  51. package/dist/resources/extensions/gsd/session-forensics.js +6 -11
  52. package/dist/resources/extensions/gsd/session-lock.js +67 -56
  53. package/dist/resources/extensions/gsd/state.js +34 -7
  54. package/dist/resources/extensions/gsd/templates/milestone-summary.md +8 -0
  55. package/dist/resources/extensions/gsd/templates/plan.md +16 -0
  56. package/dist/resources/extensions/gsd/templates/roadmap.md +13 -0
  57. package/dist/resources/extensions/gsd/templates/slice-summary.md +9 -0
  58. package/dist/resources/extensions/gsd/templates/task-plan.md +24 -0
  59. package/dist/resources/extensions/gsd/tools/plan-slice.js +14 -1
  60. package/dist/resources/extensions/gsd/tools/validate-milestone.js +3 -3
  61. package/dist/resources/extensions/gsd/verdict-parser.js +84 -0
  62. package/dist/resources/extensions/gsd/worktree-resolver.js +24 -0
  63. package/dist/resources/extensions/gsd/worktree.js +3 -2
  64. package/dist/resources/extensions/remote-questions/config.js +3 -5
  65. package/dist/resources/extensions/search-the-web/native-search.js +8 -3
  66. package/dist/resources/extensions/search-the-web/tool-search.js +19 -2
  67. package/dist/resources/skills/github-workflows/references/gh/SKILL.md +22 -1
  68. package/dist/web/standalone/.next/BUILD_ID +1 -1
  69. package/dist/web/standalone/.next/app-path-routes-manifest.json +19 -19
  70. package/dist/web/standalone/.next/build-manifest.json +3 -3
  71. package/dist/web/standalone/.next/prerender-manifest.json +3 -3
  72. package/dist/web/standalone/.next/react-loadable-manifest.json +1 -1
  73. package/dist/web/standalone/.next/required-server-files.json +1 -1
  74. package/dist/web/standalone/.next/server/app/_global-error.html +2 -2
  75. package/dist/web/standalone/.next/server/app/_global-error.rsc +1 -1
  76. package/dist/web/standalone/.next/server/app/_global-error.segments/_full.segment.rsc +1 -1
  77. package/dist/web/standalone/.next/server/app/_global-error.segments/_global-error/__PAGE__.segment.rsc +1 -1
  78. package/dist/web/standalone/.next/server/app/_global-error.segments/_global-error.segment.rsc +1 -1
  79. package/dist/web/standalone/.next/server/app/_global-error.segments/_head.segment.rsc +1 -1
  80. package/dist/web/standalone/.next/server/app/_global-error.segments/_index.segment.rsc +1 -1
  81. package/dist/web/standalone/.next/server/app/_global-error.segments/_tree.segment.rsc +1 -1
  82. package/dist/web/standalone/.next/server/app/_not-found.html +1 -1
  83. package/dist/web/standalone/.next/server/app/_not-found.rsc +1 -1
  84. package/dist/web/standalone/.next/server/app/_not-found.segments/_full.segment.rsc +1 -1
  85. package/dist/web/standalone/.next/server/app/_not-found.segments/_head.segment.rsc +1 -1
  86. package/dist/web/standalone/.next/server/app/_not-found.segments/_index.segment.rsc +1 -1
  87. package/dist/web/standalone/.next/server/app/_not-found.segments/_not-found/__PAGE__.segment.rsc +1 -1
  88. package/dist/web/standalone/.next/server/app/_not-found.segments/_not-found.segment.rsc +1 -1
  89. package/dist/web/standalone/.next/server/app/_not-found.segments/_tree.segment.rsc +1 -1
  90. package/dist/web/standalone/.next/server/app/index.html +1 -1
  91. package/dist/web/standalone/.next/server/app/index.rsc +1 -1
  92. package/dist/web/standalone/.next/server/app/index.segments/__PAGE__.segment.rsc +1 -1
  93. package/dist/web/standalone/.next/server/app/index.segments/_full.segment.rsc +1 -1
  94. package/dist/web/standalone/.next/server/app/index.segments/_head.segment.rsc +1 -1
  95. package/dist/web/standalone/.next/server/app/index.segments/_index.segment.rsc +1 -1
  96. package/dist/web/standalone/.next/server/app/index.segments/_tree.segment.rsc +1 -1
  97. package/dist/web/standalone/.next/server/app-paths-manifest.json +19 -19
  98. package/dist/web/standalone/.next/server/chunks/229.js +2 -2
  99. package/dist/web/standalone/.next/server/middleware-build-manifest.js +1 -1
  100. package/dist/web/standalone/.next/server/middleware-react-loadable-manifest.js +1 -1
  101. package/dist/web/standalone/.next/server/pages/404.html +1 -1
  102. package/dist/web/standalone/.next/server/pages/500.html +2 -2
  103. package/dist/web/standalone/.next/server/server-reference-manifest.json +1 -1
  104. package/dist/web/standalone/.next/static/chunks/4024.7c75ac378de0f2b5.js +9 -0
  105. package/dist/web/standalone/.next/static/chunks/{webpack-0a4cd455ec4197d2.js → webpack-2473ce2c3879fff4.js} +1 -1
  106. package/dist/web/standalone/server.js +1 -1
  107. package/package.json +1 -1
  108. package/packages/pi-agent-core/dist/agent-loop.d.ts.map +1 -1
  109. package/packages/pi-agent-core/dist/agent-loop.js +4 -1
  110. package/packages/pi-agent-core/dist/agent-loop.js.map +1 -1
  111. package/packages/pi-agent-core/src/agent-loop.ts +4 -1
  112. package/packages/pi-ai/dist/providers/openai-codex-responses.js +39 -10
  113. package/packages/pi-ai/dist/providers/openai-codex-responses.js.map +1 -1
  114. package/packages/pi-ai/src/providers/openai-codex-responses.ts +39 -8
  115. package/packages/pi-coding-agent/dist/core/blob-store.d.ts.map +1 -1
  116. package/packages/pi-coding-agent/dist/core/blob-store.js +8 -3
  117. package/packages/pi-coding-agent/dist/core/blob-store.js.map +1 -1
  118. package/packages/pi-coding-agent/dist/core/discovery-cache.d.ts.map +1 -1
  119. package/packages/pi-coding-agent/dist/core/discovery-cache.js +9 -2
  120. package/packages/pi-coding-agent/dist/core/discovery-cache.js.map +1 -1
  121. package/packages/pi-coding-agent/dist/core/retry-handler.js +1 -1
  122. package/packages/pi-coding-agent/dist/core/retry-handler.js.map +1 -1
  123. package/packages/pi-coding-agent/dist/modes/interactive/interactive-mode.d.ts.map +1 -1
  124. package/packages/pi-coding-agent/dist/modes/interactive/interactive-mode.js +7 -32
  125. package/packages/pi-coding-agent/dist/modes/interactive/interactive-mode.js.map +1 -1
  126. package/packages/pi-coding-agent/dist/modes/rpc/jsonl.d.ts.map +1 -1
  127. package/packages/pi-coding-agent/dist/modes/rpc/jsonl.js +5 -0
  128. package/packages/pi-coding-agent/dist/modes/rpc/jsonl.js.map +1 -1
  129. package/packages/pi-coding-agent/dist/modes/rpc/rpc-client.d.ts.map +1 -1
  130. package/packages/pi-coding-agent/dist/modes/rpc/rpc-client.js +0 -1
  131. package/packages/pi-coding-agent/dist/modes/rpc/rpc-client.js.map +1 -1
  132. package/packages/pi-coding-agent/dist/modes/rpc/rpc-mode.js +1 -1
  133. package/packages/pi-coding-agent/dist/modes/rpc/rpc-mode.js.map +1 -1
  134. package/packages/pi-coding-agent/package.json +1 -1
  135. package/packages/pi-coding-agent/src/core/blob-store.ts +6 -3
  136. package/packages/pi-coding-agent/src/core/discovery-cache.ts +9 -2
  137. package/packages/pi-coding-agent/src/core/retry-handler.ts +1 -1
  138. package/packages/pi-coding-agent/src/modes/interactive/interactive-mode.ts +7 -32
  139. package/packages/pi-coding-agent/src/modes/rpc/jsonl.ts +6 -0
  140. package/packages/pi-coding-agent/src/modes/rpc/rpc-client.ts +0 -2
  141. package/packages/pi-coding-agent/src/modes/rpc/rpc-mode.ts +2 -2
  142. package/pkg/package.json +1 -1
  143. package/src/resources/extensions/gsd/auto/infra-errors.ts +1 -0
  144. package/src/resources/extensions/gsd/auto/phases.ts +10 -11
  145. package/src/resources/extensions/gsd/auto/resolve.ts +3 -3
  146. package/src/resources/extensions/gsd/auto/run-unit.ts +2 -2
  147. package/src/resources/extensions/gsd/auto/session.ts +5 -0
  148. package/src/resources/extensions/gsd/auto/types.ts +13 -0
  149. package/src/resources/extensions/gsd/auto-artifact-paths.ts +19 -21
  150. package/src/resources/extensions/gsd/auto-dashboard.ts +5 -2
  151. package/src/resources/extensions/gsd/auto-dispatch.ts +39 -21
  152. package/src/resources/extensions/gsd/auto-loop.ts +1 -1
  153. package/src/resources/extensions/gsd/auto-post-unit.ts +18 -28
  154. package/src/resources/extensions/gsd/auto-prompts.ts +113 -19
  155. package/src/resources/extensions/gsd/auto-recovery.ts +65 -199
  156. package/src/resources/extensions/gsd/auto-start.ts +7 -27
  157. package/src/resources/extensions/gsd/auto-timers.ts +2 -2
  158. package/src/resources/extensions/gsd/auto-verification.ts +4 -7
  159. package/src/resources/extensions/gsd/auto-worktree.ts +305 -108
  160. package/src/resources/extensions/gsd/auto.ts +11 -10
  161. package/src/resources/extensions/gsd/bootstrap/db-tools.ts +93 -0
  162. package/src/resources/extensions/gsd/bootstrap/register-hooks.ts +8 -0
  163. package/src/resources/extensions/gsd/branch-patterns.ts +16 -0
  164. package/src/resources/extensions/gsd/doctor-checks.ts +5 -1291
  165. package/src/resources/extensions/gsd/doctor-engine-checks.ts +182 -0
  166. package/src/resources/extensions/gsd/doctor-environment.ts +30 -7
  167. package/src/resources/extensions/gsd/doctor-git-checks.ts +415 -0
  168. package/src/resources/extensions/gsd/doctor-global-checks.ts +84 -0
  169. package/src/resources/extensions/gsd/doctor-runtime-checks.ts +626 -0
  170. package/src/resources/extensions/gsd/doctor.ts +9 -1
  171. package/src/resources/extensions/gsd/extension-manifest.json +1 -1
  172. package/src/resources/extensions/gsd/git-service.ts +7 -15
  173. package/src/resources/extensions/gsd/gsd-db.ts +150 -2
  174. package/src/resources/extensions/gsd/guided-flow-queue.ts +11 -12
  175. package/src/resources/extensions/gsd/markdown-renderer.ts +37 -4
  176. package/src/resources/extensions/gsd/preferences-types.ts +5 -1
  177. package/src/resources/extensions/gsd/preferences-validation.ts +37 -0
  178. package/src/resources/extensions/gsd/prompts/complete-milestone.md +27 -8
  179. package/src/resources/extensions/gsd/prompts/complete-slice.md +9 -8
  180. package/src/resources/extensions/gsd/prompts/execute-task.md +16 -13
  181. package/src/resources/extensions/gsd/prompts/forensics.md +12 -5
  182. package/src/resources/extensions/gsd/prompts/gate-evaluate.md +32 -0
  183. package/src/resources/extensions/gsd/prompts/guided-complete-slice.md +1 -1
  184. package/src/resources/extensions/gsd/prompts/guided-execute-task.md +1 -1
  185. package/src/resources/extensions/gsd/prompts/guided-plan-milestone.md +1 -1
  186. package/src/resources/extensions/gsd/prompts/guided-plan-slice.md +1 -1
  187. package/src/resources/extensions/gsd/prompts/plan-milestone.md +1 -1
  188. package/src/resources/extensions/gsd/prompts/plan-slice.md +8 -3
  189. package/src/resources/extensions/gsd/prompts/reassess-roadmap.md +3 -0
  190. package/src/resources/extensions/gsd/prompts/replan-slice.md +1 -1
  191. package/src/resources/extensions/gsd/repo-identity.ts +28 -0
  192. package/src/resources/extensions/gsd/roadmap-slices.ts +2 -2
  193. package/src/resources/extensions/gsd/session-forensics.ts +6 -11
  194. package/src/resources/extensions/gsd/session-lock.ts +92 -64
  195. package/src/resources/extensions/gsd/state.ts +38 -5
  196. package/src/resources/extensions/gsd/templates/milestone-summary.md +8 -0
  197. package/src/resources/extensions/gsd/templates/plan.md +16 -0
  198. package/src/resources/extensions/gsd/templates/roadmap.md +13 -0
  199. package/src/resources/extensions/gsd/templates/slice-summary.md +9 -0
  200. package/src/resources/extensions/gsd/templates/task-plan.md +24 -0
  201. package/src/resources/extensions/gsd/tests/agent-end-retry.test.ts +2 -2
  202. package/src/resources/extensions/gsd/tests/auto-loop.test.ts +35 -0
  203. package/src/resources/extensions/gsd/tests/auto-recovery.test.ts +1 -81
  204. package/src/resources/extensions/gsd/tests/complete-slice.test.ts +2 -2
  205. package/src/resources/extensions/gsd/tests/complete-task.test.ts +2 -2
  206. package/src/resources/extensions/gsd/tests/completed-units-metrics-sync.test.ts +9 -12
  207. package/src/resources/extensions/gsd/tests/doctor-environment.test.ts +115 -1
  208. package/src/resources/extensions/gsd/tests/doctor-fixlevel.test.ts +65 -1
  209. package/src/resources/extensions/gsd/tests/doctor-git.test.ts +50 -0
  210. package/src/resources/extensions/gsd/tests/gate-dispatch.test.ts +189 -0
  211. package/src/resources/extensions/gsd/tests/gate-storage.test.ts +156 -0
  212. package/src/resources/extensions/gsd/tests/git-service.test.ts +49 -0
  213. package/src/resources/extensions/gsd/tests/gsd-db.test.ts +1 -1
  214. package/src/resources/extensions/gsd/tests/infra-error.test.ts +12 -2
  215. package/src/resources/extensions/gsd/tests/journal-integration.test.ts +39 -0
  216. package/src/resources/extensions/gsd/tests/md-importer.test.ts +1 -1
  217. package/src/resources/extensions/gsd/tests/memory-store.test.ts +2 -2
  218. package/src/resources/extensions/gsd/tests/quality-gates.test.ts +347 -0
  219. package/src/resources/extensions/gsd/tests/queue-completed-milestone-perf.test.ts +155 -0
  220. package/src/resources/extensions/gsd/tests/replan-slice.test.ts +2 -1
  221. package/src/resources/extensions/gsd/tests/repo-identity-worktree.test.ts +32 -0
  222. package/src/resources/extensions/gsd/tests/roadmap-slices.test.ts +26 -0
  223. package/src/resources/extensions/gsd/tests/run-uat.test.ts +20 -16
  224. package/src/resources/extensions/gsd/tests/session-lock-transient-read.test.ts +223 -0
  225. package/src/resources/extensions/gsd/tests/skill-activation.test.ts +44 -4
  226. package/src/resources/extensions/gsd/tests/tool-naming.test.ts +1 -1
  227. package/src/resources/extensions/gsd/tests/validate-milestone.test.ts +2 -1
  228. package/src/resources/extensions/gsd/tests/verification-gate.test.ts +0 -16
  229. package/src/resources/extensions/gsd/tests/worktree-resolver.test.ts +67 -0
  230. package/src/resources/extensions/gsd/tests/worktree-sync-milestones.test.ts +1 -1
  231. package/src/resources/extensions/gsd/tests/worktree-sync-overwrite-loop.test.ts +204 -0
  232. package/src/resources/extensions/gsd/tools/plan-slice.ts +16 -0
  233. package/src/resources/extensions/gsd/tools/validate-milestone.ts +3 -3
  234. package/src/resources/extensions/gsd/types.ts +30 -0
  235. package/src/resources/extensions/gsd/verdict-parser.ts +95 -0
  236. package/src/resources/extensions/gsd/verification-gate.ts +0 -2
  237. package/src/resources/extensions/gsd/worktree-resolver.ts +31 -0
  238. package/src/resources/extensions/gsd/worktree.ts +3 -2
  239. package/src/resources/extensions/remote-questions/config.ts +3 -5
  240. package/src/resources/extensions/search-the-web/native-search.ts +8 -3
  241. package/src/resources/extensions/search-the-web/tool-search.ts +22 -2
  242. package/src/resources/skills/github-workflows/references/gh/SKILL.md +22 -1
  243. package/dist/resources/extensions/gsd/auto-worktree-sync.js +0 -191
  244. package/dist/resources/extensions/gsd/resource-version.js +0 -97
  245. package/dist/web/standalone/.next/static/chunks/4024.11ca5c01938e5948.js +0 -9
  246. package/src/resources/extensions/gsd/auto-worktree-sync.ts +0 -234
  247. package/src/resources/extensions/gsd/resource-version.ts +0 -101
  248. /package/dist/web/standalone/.next/static/{PTL5V00OW8q4-092tUQKx → vNN0h0emdEi8l_npi8poE}/_buildManifest.js +0 -0
  249. /package/dist/web/standalone/.next/static/{PTL5V00OW8q4-092tUQKx → vNN0h0emdEi8l_npi8poE}/_ssgManifest.js +0 -0
@@ -0,0 +1,168 @@
1
+ import { existsSync, statSync } from "node:fs";
2
+ import { join } from "node:path";
3
+ import { isDbAvailable, _getAdapter } from "./gsd-db.js";
4
+ import { resolveMilestoneFile } from "./paths.js";
5
+ import { deriveState } from "./state.js";
6
+ import { readEvents } from "./workflow-events.js";
7
+ import { renderAllProjections } from "./workflow-projections.js";
8
+ export async function checkEngineHealth(basePath, issues, fixesApplied) {
9
+ // ── DB constraint violation detection (full doctor only, not pre-dispatch per D-10) ──
10
+ try {
11
+ if (isDbAvailable()) {
12
+ const adapter = _getAdapter();
13
+ // a. Orphaned tasks (task.slice_id points to non-existent slice)
14
+ try {
15
+ const orphanedTasks = adapter
16
+ .prepare(`SELECT t.id, t.slice_id, t.milestone_id
17
+ FROM tasks t
18
+ LEFT JOIN slices s ON t.milestone_id = s.milestone_id AND t.slice_id = s.id
19
+ WHERE s.id IS NULL`)
20
+ .all();
21
+ for (const row of orphanedTasks) {
22
+ issues.push({
23
+ severity: "error",
24
+ code: "db_orphaned_task",
25
+ scope: "task",
26
+ unitId: `${row.milestone_id}/${row.slice_id}/${row.id}`,
27
+ message: `Task ${row.id} references slice ${row.slice_id} in milestone ${row.milestone_id} but no such slice exists in the database`,
28
+ fixable: false,
29
+ });
30
+ }
31
+ }
32
+ catch {
33
+ // Non-fatal — orphaned task check failed
34
+ }
35
+ // b. Orphaned slices (slice.milestone_id points to non-existent milestone)
36
+ try {
37
+ const orphanedSlices = adapter
38
+ .prepare(`SELECT s.id, s.milestone_id
39
+ FROM slices s
40
+ LEFT JOIN milestones m ON s.milestone_id = m.id
41
+ WHERE m.id IS NULL`)
42
+ .all();
43
+ for (const row of orphanedSlices) {
44
+ issues.push({
45
+ severity: "error",
46
+ code: "db_orphaned_slice",
47
+ scope: "slice",
48
+ unitId: `${row.milestone_id}/${row.id}`,
49
+ message: `Slice ${row.id} references milestone ${row.milestone_id} but no such milestone exists in the database`,
50
+ fixable: false,
51
+ });
52
+ }
53
+ }
54
+ catch {
55
+ // Non-fatal — orphaned slice check failed
56
+ }
57
+ // c. Tasks marked complete without summaries
58
+ try {
59
+ const doneTasks = adapter
60
+ .prepare(`SELECT id, slice_id, milestone_id FROM tasks
61
+ WHERE status = 'done' AND (summary IS NULL OR summary = '')`)
62
+ .all();
63
+ for (const row of doneTasks) {
64
+ issues.push({
65
+ severity: "warning",
66
+ code: "db_done_task_no_summary",
67
+ scope: "task",
68
+ unitId: `${row.milestone_id}/${row.slice_id}/${row.id}`,
69
+ message: `Task ${row.id} is marked done but has no summary in the database`,
70
+ fixable: false,
71
+ });
72
+ }
73
+ }
74
+ catch {
75
+ // Non-fatal — done-task-no-summary check failed
76
+ }
77
+ // d. Duplicate entity IDs (safety check)
78
+ try {
79
+ const dupMilestones = adapter
80
+ .prepare("SELECT id, COUNT(*) as cnt FROM milestones GROUP BY id HAVING cnt > 1")
81
+ .all();
82
+ for (const row of dupMilestones) {
83
+ issues.push({
84
+ severity: "error",
85
+ code: "db_duplicate_id",
86
+ scope: "milestone",
87
+ unitId: row.id,
88
+ message: `Duplicate milestone ID "${row.id}" appears ${row.cnt} times in the database`,
89
+ fixable: false,
90
+ });
91
+ }
92
+ const dupSlices = adapter
93
+ .prepare("SELECT id, milestone_id, COUNT(*) as cnt FROM slices GROUP BY id, milestone_id HAVING cnt > 1")
94
+ .all();
95
+ for (const row of dupSlices) {
96
+ issues.push({
97
+ severity: "error",
98
+ code: "db_duplicate_id",
99
+ scope: "slice",
100
+ unitId: `${row.milestone_id}/${row.id}`,
101
+ message: `Duplicate slice ID "${row.id}" in milestone ${row.milestone_id} appears ${row.cnt} times`,
102
+ fixable: false,
103
+ });
104
+ }
105
+ const dupTasks = adapter
106
+ .prepare("SELECT id, slice_id, milestone_id, COUNT(*) as cnt FROM tasks GROUP BY id, slice_id, milestone_id HAVING cnt > 1")
107
+ .all();
108
+ for (const row of dupTasks) {
109
+ issues.push({
110
+ severity: "error",
111
+ code: "db_duplicate_id",
112
+ scope: "task",
113
+ unitId: `${row.milestone_id}/${row.slice_id}/${row.id}`,
114
+ message: `Duplicate task ID "${row.id}" in slice ${row.slice_id} appears ${row.cnt} times`,
115
+ fixable: false,
116
+ });
117
+ }
118
+ }
119
+ catch {
120
+ // Non-fatal — duplicate ID check failed
121
+ }
122
+ }
123
+ }
124
+ catch {
125
+ // Non-fatal — DB constraint checks failed entirely
126
+ }
127
+ // ── Projection drift detection ──────────────────────────────────────────
128
+ // If the DB is available, check whether markdown projections are stale
129
+ // relative to the event log and re-render them.
130
+ try {
131
+ if (isDbAvailable()) {
132
+ const eventLogPath = join(basePath, ".gsd", "event-log.jsonl");
133
+ const events = readEvents(eventLogPath);
134
+ if (events.length > 0) {
135
+ const lastEventTs = new Date(events[events.length - 1].ts).getTime();
136
+ const state = await deriveState(basePath);
137
+ for (const milestone of state.registry) {
138
+ if (milestone.status === "complete")
139
+ continue;
140
+ const roadmapPath = resolveMilestoneFile(basePath, milestone.id, "ROADMAP");
141
+ if (!roadmapPath || !existsSync(roadmapPath)) {
142
+ try {
143
+ await renderAllProjections(basePath, milestone.id);
144
+ fixesApplied.push(`re-rendered missing projections for ${milestone.id}`);
145
+ }
146
+ catch {
147
+ // Non-fatal — projection re-render failed
148
+ }
149
+ continue;
150
+ }
151
+ const projectionMtime = statSync(roadmapPath).mtimeMs;
152
+ if (lastEventTs > projectionMtime) {
153
+ try {
154
+ await renderAllProjections(basePath, milestone.id);
155
+ fixesApplied.push(`re-rendered stale projections for ${milestone.id}`);
156
+ }
157
+ catch {
158
+ // Non-fatal — projection re-render failed
159
+ }
160
+ }
161
+ }
162
+ }
163
+ }
164
+ }
165
+ catch {
166
+ // Non-fatal — projection drift check must never block doctor
167
+ }
168
+ }
@@ -121,20 +121,41 @@ function checkDependenciesInstalled(basePath) {
121
121
  message: "node_modules missing — run npm install",
122
122
  };
123
123
  }
124
- // Check if lockfile is newer than node_modules
125
- const lockfiles = ["package-lock.json", "yarn.lock", "pnpm-lock.yaml"];
126
- for (const lockfile of lockfiles) {
127
- const lockPath = join(basePath, lockfile);
124
+ // Check if lockfile is newer than the last install.
125
+ //
126
+ // Each package manager writes a metadata marker inside node_modules on
127
+ // every install. Comparing the lockfile mtime against the marker is
128
+ // reliable; comparing against the node_modules *directory* mtime is not,
129
+ // because directory mtime only changes when entries are added or removed
130
+ // — not when files inside it are updated. (#1974)
131
+ const lockfiles = [
132
+ { lock: "package-lock.json", markers: ["node_modules/.package-lock.json"] },
133
+ { lock: "yarn.lock", markers: ["node_modules/.yarn-integrity"] },
134
+ { lock: "pnpm-lock.yaml", markers: ["node_modules/.modules.yaml"] },
135
+ ];
136
+ for (const { lock, markers } of lockfiles) {
137
+ const lockPath = join(basePath, lock);
128
138
  if (!existsSync(lockPath))
129
139
  continue;
130
140
  try {
131
141
  const lockMtime = statSync(lockPath).mtimeMs;
132
- const nmMtime = statSync(nodeModules).mtimeMs;
133
- if (lockMtime > nmMtime) {
142
+ // Prefer the package manager's marker file; fall back to directory mtime
143
+ // only when no marker exists (e.g., manually created node_modules).
144
+ let installMtime = 0;
145
+ for (const marker of markers) {
146
+ const markerPath = join(basePath, marker);
147
+ if (existsSync(markerPath)) {
148
+ installMtime = Math.max(installMtime, statSync(markerPath).mtimeMs);
149
+ }
150
+ }
151
+ if (installMtime === 0) {
152
+ installMtime = statSync(nodeModules).mtimeMs;
153
+ }
154
+ if (lockMtime > installMtime) {
134
155
  return {
135
156
  name: "dependencies",
136
157
  status: "warning",
137
- message: `${lockfile} is newer than node_modules — dependencies may be stale`,
158
+ message: `${lock} is newer than node_modules — dependencies may be stale`,
138
159
  detail: `Run npm install / yarn / pnpm install to update`,
139
160
  };
140
161
  }
@@ -0,0 +1,405 @@
1
+ import { existsSync, readdirSync, realpathSync, rmSync, statSync } from "node:fs";
2
+ import { join, sep } from "node:path";
3
+ import { loadFile } from "./files.js";
4
+ import { parseRoadmap as parseLegacyRoadmap } from "./parsers-legacy.js";
5
+ import { isDbAvailable, getMilestoneSlices } from "./gsd-db.js";
6
+ import { resolveMilestoneFile } from "./paths.js";
7
+ import { deriveState, isMilestoneComplete } from "./state.js";
8
+ import { listWorktrees, resolveGitDir, worktreesDir } from "./worktree-manager.js";
9
+ import { abortAndReset } from "./git-self-heal.js";
10
+ import { RUNTIME_EXCLUSION_PATHS, resolveMilestoneIntegrationBranch, writeIntegrationBranch } from "./git-service.js";
11
+ import { nativeIsRepo, nativeWorktreeList, nativeWorktreeRemove, nativeBranchList, nativeBranchDelete, nativeLsFiles, nativeRmCached } from "./native-git-bridge.js";
12
+ import { getAllWorktreeHealth } from "./worktree-health.js";
13
+ import { loadEffectiveGSDPreferences } from "./preferences.js";
14
+ export async function checkGitHealth(basePath, issues, fixesApplied, shouldFix, isolationMode = "none") {
15
+ // Degrade gracefully if not a git repo
16
+ if (!nativeIsRepo(basePath)) {
17
+ return; // Not a git repo — skip all git health checks
18
+ }
19
+ const gitDir = resolveGitDir(basePath);
20
+ // ── Orphaned auto-worktrees & Stale milestone branches ────────────────
21
+ // These checks only apply in worktree/branch modes — skip in none mode
22
+ // where no milestone worktrees or branches are created.
23
+ if (isolationMode !== "none") {
24
+ try {
25
+ const worktrees = listWorktrees(basePath);
26
+ const milestoneWorktrees = worktrees.filter(wt => wt.branch.startsWith("milestone/"));
27
+ // Load roadmap state once for cross-referencing
28
+ const state = await deriveState(basePath);
29
+ for (const wt of milestoneWorktrees) {
30
+ // Extract milestone ID from branch name "milestone/M001" → "M001"
31
+ const milestoneId = wt.branch.replace(/^milestone\//, "");
32
+ const milestoneEntry = state.registry.find(m => m.id === milestoneId);
33
+ // Check if milestone is complete via roadmap
34
+ let isComplete = false;
35
+ if (milestoneEntry) {
36
+ if (isDbAvailable()) {
37
+ const dbSlices = getMilestoneSlices(milestoneId);
38
+ isComplete = dbSlices.length > 0 && dbSlices.every(s => s.status === "complete");
39
+ }
40
+ else {
41
+ const roadmapPath = resolveMilestoneFile(basePath, milestoneId, "ROADMAP");
42
+ const roadmapContent = roadmapPath ? await loadFile(roadmapPath) : null;
43
+ if (roadmapContent) {
44
+ const roadmap = parseLegacyRoadmap(roadmapContent);
45
+ isComplete = isMilestoneComplete(roadmap);
46
+ }
47
+ }
48
+ // When DB unavailable and no roadmap, isComplete stays false
49
+ }
50
+ if (isComplete) {
51
+ issues.push({
52
+ severity: "warning",
53
+ code: "orphaned_auto_worktree",
54
+ scope: "milestone",
55
+ unitId: milestoneId,
56
+ message: `Worktree for completed milestone ${milestoneId} still exists at ${wt.path}`,
57
+ fixable: true,
58
+ });
59
+ if (shouldFix("orphaned_auto_worktree")) {
60
+ // If cwd is inside the worktree, chdir out first — matching the
61
+ // pattern in removeWorktree() (#1946). Without this, git cannot
62
+ // remove the worktree and the doctor enters a deadlock where it
63
+ // detects the orphan every run but never cleans it up.
64
+ const cwd = process.cwd();
65
+ if (wt.path === cwd || cwd.startsWith(wt.path + sep)) {
66
+ try {
67
+ process.chdir(basePath);
68
+ }
69
+ catch {
70
+ fixesApplied.push(`skipped removing worktree at ${wt.path} (cannot chdir to basePath)`);
71
+ continue;
72
+ }
73
+ }
74
+ try {
75
+ nativeWorktreeRemove(basePath, wt.path, true);
76
+ fixesApplied.push(`removed orphaned worktree ${wt.path}`);
77
+ }
78
+ catch {
79
+ fixesApplied.push(`failed to remove worktree ${wt.path}`);
80
+ }
81
+ }
82
+ }
83
+ }
84
+ // ── Stale milestone branches ─────────────────────────────────────────
85
+ try {
86
+ const branches = nativeBranchList(basePath, "milestone/*");
87
+ if (branches.length > 0) {
88
+ const worktreeBranches = new Set(milestoneWorktrees.map(wt => wt.branch));
89
+ for (const branch of branches) {
90
+ // Skip branches that have a worktree (handled above)
91
+ if (worktreeBranches.has(branch))
92
+ continue;
93
+ const milestoneId = branch.replace(/^milestone\//, "");
94
+ const roadmapPath = resolveMilestoneFile(basePath, milestoneId, "ROADMAP");
95
+ let branchMilestoneComplete = false;
96
+ if (isDbAvailable()) {
97
+ const dbSlices = getMilestoneSlices(milestoneId);
98
+ branchMilestoneComplete = dbSlices.length > 0 && dbSlices.every(s => s.status === "complete");
99
+ }
100
+ else {
101
+ const roadmapContent = roadmapPath ? await loadFile(roadmapPath) : null;
102
+ if (!roadmapContent)
103
+ continue;
104
+ const roadmap = parseLegacyRoadmap(roadmapContent);
105
+ branchMilestoneComplete = isMilestoneComplete(roadmap);
106
+ }
107
+ if (branchMilestoneComplete) {
108
+ issues.push({
109
+ severity: "info",
110
+ code: "stale_milestone_branch",
111
+ scope: "milestone",
112
+ unitId: milestoneId,
113
+ message: `Branch ${branch} exists for completed milestone ${milestoneId}`,
114
+ fixable: true,
115
+ });
116
+ if (shouldFix("stale_milestone_branch")) {
117
+ try {
118
+ nativeBranchDelete(basePath, branch, true);
119
+ fixesApplied.push(`deleted stale branch ${branch}`);
120
+ }
121
+ catch {
122
+ fixesApplied.push(`failed to delete branch ${branch}`);
123
+ }
124
+ }
125
+ }
126
+ }
127
+ }
128
+ }
129
+ catch {
130
+ // git branch list failed — skip stale branch check
131
+ }
132
+ }
133
+ catch {
134
+ // listWorktrees or deriveState failed — skip worktree/branch checks
135
+ }
136
+ } // end isolationMode !== "none"
137
+ // ── Corrupt merge state ────────────────────────────────────────────────
138
+ try {
139
+ const mergeStateFiles = ["MERGE_HEAD", "SQUASH_MSG"];
140
+ const mergeStateDirs = ["rebase-apply", "rebase-merge"];
141
+ const found = [];
142
+ for (const f of mergeStateFiles) {
143
+ if (existsSync(join(gitDir, f)))
144
+ found.push(f);
145
+ }
146
+ for (const d of mergeStateDirs) {
147
+ if (existsSync(join(gitDir, d)))
148
+ found.push(d);
149
+ }
150
+ if (found.length > 0) {
151
+ issues.push({
152
+ severity: "error",
153
+ code: "corrupt_merge_state",
154
+ scope: "project",
155
+ unitId: "project",
156
+ message: `Corrupt merge/rebase state detected: ${found.join(", ")}`,
157
+ fixable: true,
158
+ });
159
+ if (shouldFix("corrupt_merge_state")) {
160
+ const result = abortAndReset(basePath);
161
+ fixesApplied.push(`cleaned merge state: ${result.cleaned.join(", ")}`);
162
+ }
163
+ }
164
+ }
165
+ catch {
166
+ // Can't check .git dir — skip
167
+ }
168
+ // ── Tracked runtime files ──────────────────────────────────────────────
169
+ try {
170
+ const trackedPaths = [];
171
+ for (const exclusion of RUNTIME_EXCLUSION_PATHS) {
172
+ try {
173
+ const files = nativeLsFiles(basePath, exclusion);
174
+ if (files.length > 0) {
175
+ trackedPaths.push(...files);
176
+ }
177
+ }
178
+ catch {
179
+ // Individual ls-files can fail — continue
180
+ }
181
+ }
182
+ if (trackedPaths.length > 0) {
183
+ issues.push({
184
+ severity: "warning",
185
+ code: "tracked_runtime_files",
186
+ scope: "project",
187
+ unitId: "project",
188
+ message: `${trackedPaths.length} runtime file(s) are tracked by git: ${trackedPaths.slice(0, 5).join(", ")}${trackedPaths.length > 5 ? "..." : ""}`,
189
+ fixable: true,
190
+ });
191
+ if (shouldFix("tracked_runtime_files")) {
192
+ try {
193
+ for (const exclusion of RUNTIME_EXCLUSION_PATHS) {
194
+ nativeRmCached(basePath, [exclusion]);
195
+ }
196
+ fixesApplied.push(`untracked ${trackedPaths.length} runtime file(s)`);
197
+ }
198
+ catch {
199
+ fixesApplied.push("failed to untrack runtime files");
200
+ }
201
+ }
202
+ }
203
+ }
204
+ catch {
205
+ // git ls-files failed — skip
206
+ }
207
+ // ── Legacy slice branches ──────────────────────────────────────────────
208
+ try {
209
+ const branchList = nativeBranchList(basePath, "gsd/*/*")
210
+ .filter((branch) => !branch.startsWith("gsd/quick/"));
211
+ if (branchList.length > 0) {
212
+ issues.push({
213
+ severity: "info",
214
+ code: "legacy_slice_branches",
215
+ scope: "project",
216
+ unitId: "project",
217
+ message: `${branchList.length} legacy slice branch(es) found: ${branchList.slice(0, 3).join(", ")}${branchList.length > 3 ? "..." : ""}. These are no longer used (branchless architecture).`,
218
+ fixable: true,
219
+ });
220
+ if (shouldFix("legacy_slice_branches")) {
221
+ let deleted = 0;
222
+ for (const branch of branchList) {
223
+ try {
224
+ nativeBranchDelete(basePath, branch, true);
225
+ deleted++;
226
+ }
227
+ catch { /* skip branches that can't be deleted */ }
228
+ }
229
+ if (deleted > 0) {
230
+ fixesApplied.push(`deleted ${deleted} legacy slice branch(es)`);
231
+ }
232
+ }
233
+ }
234
+ }
235
+ catch {
236
+ // git branch list failed — skip
237
+ }
238
+ // ── Integration branch existence ──────────────────────────────────────
239
+ // For each active (non-complete) milestone, verify the stored integration
240
+ // branch still exists in git. A missing integration branch blocks merge-back
241
+ // and causes the next merge operation to fail silently.
242
+ try {
243
+ const state = await deriveState(basePath);
244
+ const gitPrefs = loadEffectiveGSDPreferences()?.preferences?.git ?? {};
245
+ for (const milestone of state.registry) {
246
+ if (milestone.status === "complete")
247
+ continue;
248
+ const resolution = resolveMilestoneIntegrationBranch(basePath, milestone.id, gitPrefs);
249
+ if (!resolution.recordedBranch)
250
+ continue; // No stored branch — skip (not yet set)
251
+ if (resolution.status === "fallback" && resolution.effectiveBranch) {
252
+ issues.push({
253
+ severity: "warning",
254
+ code: "integration_branch_missing",
255
+ scope: "milestone",
256
+ unitId: milestone.id,
257
+ message: resolution.reason,
258
+ fixable: true,
259
+ });
260
+ if (shouldFix("integration_branch_missing")) {
261
+ writeIntegrationBranch(basePath, milestone.id, resolution.effectiveBranch);
262
+ fixesApplied.push(`updated integration branch for ${milestone.id} to "${resolution.effectiveBranch}"`);
263
+ }
264
+ continue;
265
+ }
266
+ if (resolution.status === "missing") {
267
+ issues.push({
268
+ severity: "error",
269
+ code: "integration_branch_missing",
270
+ scope: "milestone",
271
+ unitId: milestone.id,
272
+ message: resolution.reason,
273
+ fixable: false,
274
+ });
275
+ }
276
+ }
277
+ }
278
+ catch {
279
+ // Non-fatal — integration branch check failed
280
+ }
281
+ // ── Orphaned worktree directories ────────────────────────────────────
282
+ // Worktree removal can fail after a branch delete, leaving a directory
283
+ // that is no longer registered with git. These orphaned dirs cause
284
+ // "already exists" errors when re-creating the same worktree name.
285
+ try {
286
+ const wtDir = worktreesDir(basePath);
287
+ if (existsSync(wtDir)) {
288
+ // Resolve symlinks and normalize separators so that symlinked .gsd
289
+ // paths (e.g. ~/.gsd/projects/<hash>/worktrees/…) match the paths
290
+ // returned by `git worktree list`.
291
+ const normalizePath = (p) => {
292
+ try {
293
+ p = realpathSync(p);
294
+ }
295
+ catch { /* path may not exist */ }
296
+ return p.replaceAll("\\", "/");
297
+ };
298
+ const registeredPaths = new Set(nativeWorktreeList(basePath).map(entry => normalizePath(entry.path)));
299
+ for (const entry of readdirSync(wtDir)) {
300
+ const fullPath = join(wtDir, entry);
301
+ try {
302
+ if (!statSync(fullPath).isDirectory())
303
+ continue;
304
+ }
305
+ catch {
306
+ continue;
307
+ }
308
+ const normalizedFullPath = normalizePath(fullPath);
309
+ if (!registeredPaths.has(normalizedFullPath)) {
310
+ issues.push({
311
+ severity: "warning",
312
+ code: "worktree_directory_orphaned",
313
+ scope: "project",
314
+ unitId: entry,
315
+ message: `Worktree directory ${fullPath} exists on disk but is not registered with git. Run "git worktree prune" or doctor --fix to remove it.`,
316
+ fixable: true,
317
+ });
318
+ if (shouldFix("worktree_directory_orphaned")) {
319
+ try {
320
+ rmSync(fullPath, { recursive: true, force: true });
321
+ fixesApplied.push(`removed orphaned worktree directory ${fullPath}`);
322
+ }
323
+ catch {
324
+ fixesApplied.push(`failed to remove orphaned worktree directory ${fullPath}`);
325
+ }
326
+ }
327
+ }
328
+ }
329
+ }
330
+ }
331
+ catch {
332
+ // Non-fatal — orphaned worktree directory check failed
333
+ }
334
+ // ── Worktree lifecycle checks ──────────────────────────────────────────
335
+ // Check GSD-managed worktrees for: merged branches, stale work, dirty
336
+ // state, and unpushed commits. Only worktrees under .gsd/worktrees/.
337
+ try {
338
+ const healthStatuses = getAllWorktreeHealth(basePath);
339
+ const cwd = process.cwd();
340
+ for (const health of healthStatuses) {
341
+ const wt = health.worktree;
342
+ const isCwd = wt.path === cwd || cwd.startsWith(wt.path + sep);
343
+ // Branch fully merged into main — safe to remove
344
+ if (health.mergedIntoMain) {
345
+ issues.push({
346
+ severity: "info",
347
+ code: "worktree_branch_merged",
348
+ scope: "project",
349
+ unitId: wt.name,
350
+ message: `Worktree "${wt.name}" (branch ${wt.branch}) is fully merged into main${health.safeToRemove ? " — safe to remove" : ""}`,
351
+ fixable: health.safeToRemove,
352
+ });
353
+ if (health.safeToRemove && shouldFix("worktree_branch_merged") && !isCwd) {
354
+ try {
355
+ const { removeWorktree } = await import("./worktree-manager.js");
356
+ removeWorktree(basePath, wt.name, { deleteBranch: true, branch: wt.branch });
357
+ fixesApplied.push(`removed merged worktree "${wt.name}" and deleted branch ${wt.branch}`);
358
+ }
359
+ catch {
360
+ fixesApplied.push(`failed to remove merged worktree "${wt.name}"`);
361
+ }
362
+ }
363
+ // If merged, skip the stale/dirty/unpushed checks — they're irrelevant
364
+ continue;
365
+ }
366
+ // Stale: no commits in N days, not merged
367
+ if (health.stale) {
368
+ const days = Math.floor(health.lastCommitAgeDays);
369
+ issues.push({
370
+ severity: "warning",
371
+ code: "worktree_stale",
372
+ scope: "project",
373
+ unitId: wt.name,
374
+ message: `Worktree "${wt.name}" has had no commits in ${days} day${days === 1 ? "" : "s"}`,
375
+ fixable: false,
376
+ });
377
+ }
378
+ // Dirty: uncommitted changes in a worktree (only flag on stale worktrees to avoid noise)
379
+ if (health.dirty && health.stale) {
380
+ issues.push({
381
+ severity: "warning",
382
+ code: "worktree_dirty",
383
+ scope: "project",
384
+ unitId: wt.name,
385
+ message: `Worktree "${wt.name}" has ${health.dirtyFileCount} uncommitted file${health.dirtyFileCount === 1 ? "" : "s"} and is stale`,
386
+ fixable: false,
387
+ });
388
+ }
389
+ // Unpushed: commits not on any remote (only flag on stale worktrees to avoid noise)
390
+ if (health.unpushedCommits > 0 && health.stale) {
391
+ issues.push({
392
+ severity: "warning",
393
+ code: "worktree_unpushed",
394
+ scope: "project",
395
+ unitId: wt.name,
396
+ message: `Worktree "${wt.name}" has ${health.unpushedCommits} unpushed commit${health.unpushedCommits === 1 ? "" : "s"}`,
397
+ fixable: false,
398
+ });
399
+ }
400
+ }
401
+ }
402
+ catch {
403
+ // Non-fatal — worktree lifecycle check failed
404
+ }
405
+ }