gsd-pi 2.35.0-dev.640d5c7 → 2.35.0-dev.67d0e02

package/packages/pi-coding-agent/dist/core/resource-loader.js.map

@@ -1 +1 @@
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{ existsSync, readdirSync, readFileSync, statSync } from \"node:fs\";\nimport { homedir } from \"node:os\";\nimport { join, resolve, sep } from \"node:path\";\nimport chalk from \"chalk\";\nimport { CONFIG_DIR_NAME, getAgentDir } from \"../config.js\";\nimport { loadThemeFromPath, type Theme } from \"../modes/interactive/theme/theme.js\";\nimport type { ResourceCollision, ResourceDiagnostic } from \"./diagnostics.js\";\n\nexport type { ResourceCollision, ResourceDiagnostic } from \"./diagnostics.js\";\n\nimport { createEventBus, type EventBus } from \"./event-bus.js\";\nimport { createExtensionRuntime, loadExtensionFromFactory, loadExtensions } from \"./extensions/loader.js\";\nimport type { Extension, ExtensionFactory, ExtensionRuntime, LoadExtensionsResult } from \"./extensions/types.js\";\nimport { DefaultPackageManager, type PathMetadata } from \"./package-manager.js\";\nimport type { PromptTemplate } from \"./prompt-templates.js\";\nimport { loadPromptTemplates } from \"./prompt-templates.js\";\nimport { SettingsManager } from \"./settings-manager.js\";\nimport type { Skill } from \"./skills.js\";\nimport { loadSkills } from \"./skills.js\";\n\nexport interface ResourceExtensionPaths {\n\tskillPaths?: Array<{ path: string; metadata: PathMetadata }>;\n\tpromptPaths?: Array<{ path: string; metadata: PathMetadata }>;\n\tthemePaths?: Array<{ path: string; metadata: PathMetadata }>;\n}\n\nexport interface ResourceLoader {\n\tgetExtensions(): LoadExtensionsResult;\n\tgetSkills(): { skills: Skill[]; diagnostics: ResourceDiagnostic[] };\n\tgetPrompts(): { prompts: PromptTemplate[]; diagnostics: ResourceDiagnostic[] };\n\tgetThemes(): { themes: Theme[]; diagnostics: ResourceDiagnostic[] };\n\tgetAgentsFiles(): { agentsFiles: Array<{ path: string; content: string }> };\n\tgetSystemPrompt(): string | undefined;\n\tgetAppendSystemPrompt(): string[];\n\tgetPathMetadata(): Map<string, PathMetadata>;\n\textendResources(paths: ResourceExtensionPaths): void;\n\treload(): Promise<void>;\n}\n\nfunction resolvePromptInput(input: string | undefined, description: string): string | undefined {\n\tif (!input) {\n\t\treturn undefined;\n\t}\n\n\tif (existsSync(input)) {\n\t\ttry {\n\t\t\treturn readFileSync(input, \"utf-8\");\n\t\t} catch (error) {\n\t\t\tconsole.error(chalk.yellow(`Warning: Could not read ${description} file ${input}: ${error}`));\n\t\t\treturn input;\n\t\t}\n\t}\n\n\treturn input;\n}\n\nfunction loadContextFileFromDir(dir: string): { path: string; content: string } | null {\n\tconst candidates = [\"AGENTS.md\", \"CLAUDE.md\"];\n\tfor (const filename of candidates) {\n\t\tconst filePath = join(dir, filename);\n\t\tif (existsSync(filePath)) {\n\t\t\ttry {\n\t\t\t\treturn {\n\t\t\t\t\tpath: filePath,\n\t\t\t\t\tcontent: readFileSync(filePath, \"utf-8\"),\n\t\t\t\t};\n\t\t\t} catch (error) {\n\t\t\t\tconsole.error(chalk.yellow(`Warning: Could not read ${filePath}: ${error}`));\n\t\t\t}\n\t\t}\n\t}\n\treturn null;\n}\n\nfunction loadProjectContextFiles(\n\toptions: { cwd?: string; agentDir?: string } = {},\n): Array<{ path: string; content: string }> {\n\tconst resolvedCwd = options.cwd ?? process.cwd();\n\tconst resolvedAgentDir = options.agentDir ?? getAgentDir();\n\n\tconst contextFiles: Array<{ path: string; content: string }> = [];\n\tconst seenPaths = new Set<string>();\n\n\tconst globalContext = loadContextFileFromDir(resolvedAgentDir);\n\tif (globalContext) {\n\t\tcontextFiles.push(globalContext);\n\t\tseenPaths.add(globalContext.path);\n\t}\n\n\tconst ancestorContextFiles: Array<{ path: string; content: string }> = [];\n\n\tlet currentDir = resolvedCwd;\n\tconst root = resolve(\"/\");\n\n\twhile (true) {\n\t\tconst contextFile = loadContextFileFromDir(currentDir);\n\t\tif (contextFile && !seenPaths.has(contextFile.path)) {\n\t\t\tancestorContextFiles.unshift(contextFile);\n\t\t\tseenPaths.add(contextFile.path);\n\t\t}\n\n\t\tif (currentDir === root) break;\n\n\t\tconst parentDir = resolve(currentDir, \"..\");\n\t\tif (parentDir === currentDir) break;\n\t\tcurrentDir = parentDir;\n\t}\n\n\tcontextFiles.push(...ancestorContextFiles);\n\n\treturn contextFiles;\n}\n\nexport interface DefaultResourceLoaderOptions {\n\tcwd?: string;\n\tagentDir?: string;\n\tsettingsManager?: SettingsManager;\n\teventBus?: EventBus;\n\tadditionalExtensionPaths?: string[];\n\tadditionalSkillPaths?: string[];\n\tadditionalPromptTemplatePaths?: string[];\n\tadditionalThemePaths?: string[];\n\textensionFactories?: ExtensionFactory[];\n\tnoExtensions?: boolean;\n\tnoSkills?: boolean;\n\tnoPromptTemplates?: boolean;\n\tnoThemes?: boolean;\n\tsystemPrompt?: string;\n\tappendSystemPrompt?: string;\n\textensionsOverride?: (base: LoadExtensionsResult) => LoadExtensionsResult;\n\tskillsOverride?: (base: { skills: Skill[]; diagnostics: ResourceDiagnostic[] }) => {\n\t\tskills: Skill[];\n\t\tdiagnostics: ResourceDiagnostic[];\n\t};\n\tpromptsOverride?: (base: { prompts: PromptTemplate[]; diagnostics: ResourceDiagnostic[] }) => {\n\t\tprompts: PromptTemplate[];\n\t\tdiagnostics: ResourceDiagnostic[];\n\t};\n\tthemesOverride?: (base: { themes: Theme[]; diagnostics: ResourceDiagnostic[] }) => {\n\t\tthemes: Theme[];\n\t\tdiagnostics: ResourceDiagnostic[];\n\t};\n\tagentsFilesOverride?: (base: { agentsFiles: Array<{ path: string; content: string }> }) => {\n\t\tagentsFiles: Array<{ path: string; content: string }>;\n\t};\n\tsystemPromptOverride?: (base: string | undefined) => string | undefined;\n\tappendSystemPromptOverride?: (base: string[]) => string[];\n}\n\nexport class DefaultResourceLoader implements ResourceLoader {\n\tprivate cwd: string;\n\tprivate agentDir: string;\n\tprivate settingsManager: SettingsManager;\n\tprivate eventBus: EventBus;\n\tprivate packageManager: DefaultPackageManager;\n\tprivate additionalExtensionPaths: string[];\n\tprivate additionalSkillPaths: string[];\n\tprivate additionalPromptTemplatePaths: string[];\n\tprivate additionalThemePaths: string[];\n\tprivate extensionFactories: ExtensionFactory[];\n\tprivate noExtensions: boolean;\n\tprivate noSkills: boolean;\n\tprivate noPromptTemplates: boolean;\n\tprivate noThemes: boolean;\n\tprivate systemPromptSource?: string;\n\tprivate appendSystemPromptSource?: string;\n\tprivate extensionsOverride?: (base: LoadExtensionsResult) => LoadExtensionsResult;\n\tprivate skillsOverride?: (base: { skills: Skill[]; diagnostics: ResourceDiagnostic[] }) => {\n\t\tskills: Skill[];\n\t\tdiagnostics: ResourceDiagnostic[];\n\t};\n\tprivate promptsOverride?: (base: { prompts: PromptTemplate[]; diagnostics: ResourceDiagnostic[] }) => {\n\t\tprompts: PromptTemplate[];\n\t\tdiagnostics: ResourceDiagnostic[];\n\t};\n\tprivate themesOverride?: (base: { themes: Theme[]; diagnostics: ResourceDiagnostic[] }) => {\n\t\tthemes: Theme[];\n\t\tdiagnostics: ResourceDiagnostic[];\n\t};\n\tprivate agentsFilesOverride?: (base: { agentsFiles: Array<{ path: string; content: string }> }) => {\n\t\tagentsFiles: Array<{ path: string; content: string }>;\n\t};\n\tprivate systemPromptOverride?: (base: string | undefined) => string | undefined;\n\tprivate appendSystemPromptOverride?: (base: string[]) => string[];\n\n\tprivate extensionsResult: LoadExtensionsResult;\n\tprivate skills: Skill[];\n\tprivate skillDiagnostics: ResourceDiagnostic[];\n\tprivate prompts: PromptTemplate[];\n\tprivate promptDiagnostics: ResourceDiagnostic[];\n\tprivate themes: Theme[];\n\tprivate themeDiagnostics: ResourceDiagnostic[];\n\tprivate agentsFiles: Array<{ path: string; content: string }>;\n\tprivate systemPrompt?: string;\n\tprivate appendSystemPrompt: string[];\n\tprivate pathMetadata: Map<string, PathMetadata>;\n\tprivate lastSkillPaths: string[];\n\tprivate lastPromptPaths: string[];\n\tprivate lastThemePaths: string[];\n\n\tconstructor(options: DefaultResourceLoaderOptions) {\n\t\tthis.cwd = options.cwd ?? process.cwd();\n\t\tthis.agentDir = options.agentDir ?? getAgentDir();\n\t\tthis.settingsManager = options.settingsManager ?? SettingsManager.create(this.cwd, this.agentDir);\n\t\tthis.eventBus = options.eventBus ?? createEventBus();\n\t\tthis.packageManager = new DefaultPackageManager({\n\t\t\tcwd: this.cwd,\n\t\t\tagentDir: this.agentDir,\n\t\t\tsettingsManager: this.settingsManager,\n\t\t});\n\t\tthis.additionalExtensionPaths = options.additionalExtensionPaths ?? [];\n\t\tthis.additionalSkillPaths = options.additionalSkillPaths ?? [];\n\t\tthis.additionalPromptTemplatePaths = options.additionalPromptTemplatePaths ?? [];\n\t\tthis.additionalThemePaths = options.additionalThemePaths ?? [];\n\t\tthis.extensionFactories = options.extensionFactories ?? [];\n\t\tthis.noExtensions = options.noExtensions ?? false;\n\t\tthis.noSkills = options.noSkills ?? false;\n\t\tthis.noPromptTemplates = options.noPromptTemplates ?? false;\n\t\tthis.noThemes = options.noThemes ?? false;\n\t\tthis.systemPromptSource = options.systemPrompt;\n\t\tthis.appendSystemPromptSource = options.appendSystemPrompt;\n\t\tthis.extensionsOverride = options.extensionsOverride;\n\t\tthis.skillsOverride = options.skillsOverride;\n\t\tthis.promptsOverride = options.promptsOverride;\n\t\tthis.themesOverride = options.themesOverride;\n\t\tthis.agentsFilesOverride = options.agentsFilesOverride;\n\t\tthis.systemPromptOverride = options.systemPromptOverride;\n\t\tthis.appendSystemPromptOverride = options.appendSystemPromptOverride;\n\n\t\tthis.extensionsResult = { extensions: [], errors: [], runtime: createExtensionRuntime() };\n\t\tthis.skills = [];\n\t\tthis.skillDiagnostics = [];\n\t\tthis.prompts = [];\n\t\tthis.promptDiagnostics = [];\n\t\tthis.themes = [];\n\t\tthis.themeDiagnostics = [];\n\t\tthis.agentsFiles = [];\n\t\tthis.appendSystemPrompt = [];\n\t\tthis.pathMetadata = new Map();\n\t\tthis.lastSkillPaths = [];\n\t\tthis.lastPromptPaths = [];\n\t\tthis.lastThemePaths = [];\n\t}\n\n\tgetExtensions(): LoadExtensionsResult {\n\t\treturn this.extensionsResult;\n\t}\n\n\tgetSkills(): { skills: Skill[]; diagnostics: ResourceDiagnostic[] } {\n\t\treturn { skills: this.skills, diagnostics: this.skillDiagnostics };\n\t}\n\n\tgetPrompts(): { prompts: PromptTemplate[]; diagnostics: ResourceDiagnostic[] } {\n\t\treturn { prompts: this.prompts, diagnostics: this.promptDiagnostics };\n\t}\n\n\tgetThemes(): { themes: Theme[]; diagnostics: ResourceDiagnostic[] } {\n\t\treturn { themes: this.themes, diagnostics: this.themeDiagnostics };\n\t}\n\n\tgetAgentsFiles(): { agentsFiles: Array<{ path: string; content: string }> } {\n\t\treturn { agentsFiles: this.agentsFiles };\n\t}\n\n\tgetSystemPrompt(): string | undefined {\n\t\treturn this.systemPrompt;\n\t}\n\n\tgetAppendSystemPrompt(): string[] {\n\t\treturn this.appendSystemPrompt;\n\t}\n\n\tgetPathMetadata(): Map<string, PathMetadata> {\n\t\treturn this.pathMetadata;\n\t}\n\n\textendResources(paths: ResourceExtensionPaths): void {\n\t\tconst skillPaths = this.normalizeExtensionPaths(paths.skillPaths ?? []);\n\t\tconst promptPaths = this.normalizeExtensionPaths(paths.promptPaths ?? []);\n\t\tconst themePaths = this.normalizeExtensionPaths(paths.themePaths ?? []);\n\n\t\tif (skillPaths.length > 0) {\n\t\t\tthis.lastSkillPaths = this.mergePaths(\n\t\t\t\tthis.lastSkillPaths,\n\t\t\t\tskillPaths.map((entry) => entry.path),\n\t\t\t);\n\t\t\tthis.updateSkillsFromPaths(this.lastSkillPaths, skillPaths);\n\t\t}\n\n\t\tif (promptPaths.length > 0) {\n\t\t\tthis.lastPromptPaths = this.mergePaths(\n\t\t\t\tthis.lastPromptPaths,\n\t\t\t\tpromptPaths.map((entry) => entry.path),\n\t\t\t);\n\t\t\tthis.updatePromptsFromPaths(this.lastPromptPaths, promptPaths);\n\t\t}\n\n\t\tif (themePaths.length > 0) {\n\t\t\tthis.lastThemePaths = this.mergePaths(\n\t\t\t\tthis.lastThemePaths,\n\t\t\t\tthemePaths.map((entry) => entry.path),\n\t\t\t);\n\t\t\tthis.updateThemesFromPaths(this.lastThemePaths, themePaths);\n\t\t}\n\t}\n\n\tasync reload(): Promise<void> {\n\t\tconst resolvedPaths = await this.packageManager.resolve();\n\t\tconst cliExtensionPaths = await this.packageManager.resolveExtensionSources(this.additionalExtensionPaths, {\n\t\t\ttemporary: true,\n\t\t});\n\n\t\t// Helper to extract enabled paths and store metadata\n\t\tconst getEnabledResources = (\n\t\t\tresources: Array<{ path: string; enabled: boolean; metadata: PathMetadata }>,\n\t\t): Array<{ path: string; enabled: boolean; metadata: PathMetadata }> => {\n\t\t\tfor (const r of resources) {\n\t\t\t\tif (!this.pathMetadata.has(r.path)) {\n\t\t\t\t\tthis.pathMetadata.set(r.path, r.metadata);\n\t\t\t\t}\n\t\t\t}\n\t\t\treturn resources.filter((r) => r.enabled);\n\t\t};\n\n\t\tconst getEnabledPaths = (\n\t\t\tresources: Array<{ path: string; enabled: boolean; metadata: PathMetadata }>,\n\t\t): string[] => getEnabledResources(resources).map((r) => r.path);\n\n\t\t// Store metadata and get enabled paths\n\t\tthis.pathMetadata = new Map();\n\t\tconst enabledExtensions = getEnabledPaths(resolvedPaths.extensions);\n\t\tconst enabledSkillResources = getEnabledResources(resolvedPaths.skills);\n\t\tconst enabledPrompts = getEnabledPaths(resolvedPaths.prompts);\n\t\tconst enabledThemes = getEnabledPaths(resolvedPaths.themes);\n\n\t\tconst mapSkillPath = (resource: { path: string; metadata: PathMetadata }): string => {\n\t\t\tif (resource.metadata.source !== \"auto\" && resource.metadata.origin !== \"package\") {\n\t\t\t\treturn resource.path;\n\t\t\t}\n\t\t\ttry {\n\t\t\t\tconst stats = statSync(resource.path);\n\t\t\t\tif (!stats.isDirectory()) {\n\t\t\t\t\treturn resource.path;\n\t\t\t\t}\n\t\t\t} catch {\n\t\t\t\treturn resource.path;\n\t\t\t}\n\t\t\tconst skillFile = join(resource.path, \"SKILL.md\");\n\t\t\tif (existsSync(skillFile)) {\n\t\t\t\tif (!this.pathMetadata.has(skillFile)) {\n\t\t\t\t\tthis.pathMetadata.set(skillFile, resource.metadata);\n\t\t\t\t}\n\t\t\t\treturn skillFile;\n\t\t\t}\n\t\t\treturn resource.path;\n\t\t};\n\n\t\tconst enabledSkills = enabledSkillResources.map(mapSkillPath);\n\n\t\t// Add CLI paths metadata\n\t\tfor (const r of cliExtensionPaths.extensions) {\n\t\t\tif (!this.pathMetadata.has(r.path)) {\n\t\t\t\tthis.pathMetadata.set(r.path, { source: \"cli\", scope: \"temporary\", origin: \"top-level\" });\n\t\t\t}\n\t\t}\n\t\tfor (const r of cliExtensionPaths.skills) {\n\t\t\tif (!this.pathMetadata.has(r.path)) {\n\t\t\t\tthis.pathMetadata.set(r.path, { source: \"cli\", scope: \"temporary\", origin: \"top-level\" });\n\t\t\t}\n\t\t}\n\n\t\tconst cliEnabledExtensions = getEnabledPaths(cliExtensionPaths.extensions);\n\t\tconst cliEnabledSkills = getEnabledPaths(cliExtensionPaths.skills);\n\t\tconst cliEnabledPrompts = getEnabledPaths(cliExtensionPaths.prompts);\n\t\tconst cliEnabledThemes = getEnabledPaths(cliExtensionPaths.themes);\n\n\t\tconst extensionPaths = this.noExtensions\n\t\t\t? cliEnabledExtensions\n\t\t\t: this.mergePaths(cliEnabledExtensions, enabledExtensions);\n\n\t\tconst extensionsResult = await loadExtensions(extensionPaths, this.cwd, this.eventBus);\n\t\tconst inlineExtensions = await this.loadExtensionFactories(extensionsResult.runtime);\n\t\textensionsResult.extensions.push(...inlineExtensions.extensions);\n\t\textensionsResult.errors.push(...inlineExtensions.errors);\n\n\t\t// Detect extension conflicts (tools, commands, flags with same names from different extensions)\n\t\t// Keep all extensions loaded. Conflicts are reported as diagnostics, and precedence is handled by load order.\n\t\tconst conflicts = this.detectExtensionConflicts(extensionsResult.extensions);\n\t\tfor (const conflict of conflicts) {\n\t\t\textensionsResult.errors.push({ path: conflict.path, error: conflict.message });\n\t\t}\n\n\t\tthis.extensionsResult = this.extensionsOverride ? this.extensionsOverride(extensionsResult) : extensionsResult;\n\n\t\tconst skillPaths = this.noSkills\n\t\t\t? this.mergePaths(cliEnabledSkills, this.additionalSkillPaths)\n\t\t\t: this.mergePaths([...enabledSkills, ...cliEnabledSkills], this.additionalSkillPaths);\n\n\t\tthis.lastSkillPaths = skillPaths;\n\t\tthis.updateSkillsFromPaths(skillPaths);\n\n\t\tconst promptPaths = this.noPromptTemplates\n\t\t\t? this.mergePaths(cliEnabledPrompts, this.additionalPromptTemplatePaths)\n\t\t\t: this.mergePaths([...enabledPrompts, ...cliEnabledPrompts], this.additionalPromptTemplatePaths);\n\n\t\tthis.lastPromptPaths = promptPaths;\n\t\tthis.updatePromptsFromPaths(promptPaths);\n\n\t\tconst themePaths = this.noThemes\n\t\t\t? this.mergePaths(cliEnabledThemes, this.additionalThemePaths)\n\t\t\t: this.mergePaths([...enabledThemes, ...cliEnabledThemes], this.additionalThemePaths);\n\n\t\tthis.lastThemePaths = themePaths;\n\t\tthis.updateThemesFromPaths(themePaths);\n\n\t\tfor (const extension of this.extensionsResult.extensions) {\n\t\t\tthis.addDefaultMetadataForPath(extension.path);\n\t\t}\n\n\t\tconst agentsFiles = { agentsFiles: loadProjectContextFiles({ cwd: this.cwd, agentDir: this.agentDir }) };\n\t\tconst resolvedAgentsFiles = this.agentsFilesOverride ? this.agentsFilesOverride(agentsFiles) : agentsFiles;\n\t\tthis.agentsFiles = resolvedAgentsFiles.agentsFiles;\n\n\t\tconst baseSystemPrompt = resolvePromptInput(\n\t\t\tthis.systemPromptSource ?? this.discoverFileInSearchPaths(\"SYSTEM.md\"),\n\t\t\t\"system prompt\",\n\t\t);\n\t\tthis.systemPrompt = this.systemPromptOverride ? this.systemPromptOverride(baseSystemPrompt) : baseSystemPrompt;\n\n\t\tconst appendSource = this.appendSystemPromptSource ?? this.discoverFileInSearchPaths(\"APPEND_SYSTEM.md\");\n\t\tconst resolvedAppend = resolvePromptInput(appendSource, \"append system prompt\");\n\t\tconst baseAppend = resolvedAppend ? [resolvedAppend] : [];\n\t\tthis.appendSystemPrompt = this.appendSystemPromptOverride\n\t\t\t? this.appendSystemPromptOverride(baseAppend)\n\t\t\t: baseAppend;\n\t}\n\n\tprivate normalizeExtensionPaths(\n\t\tentries: Array<{ path: string; metadata: PathMetadata }>,\n\t): Array<{ path: string; metadata: PathMetadata }> {\n\t\treturn entries.map((entry) => ({\n\t\t\tpath: this.resolveResourcePath(entry.path),\n\t\t\tmetadata: entry.metadata,\n\t\t}));\n\t}\n\n\tprivate updateSkillsFromPaths(\n\t\tskillPaths: string[],\n\t\textensionPaths: Array<{ path: string; metadata: PathMetadata }> = [],\n\t): void {\n\t\tlet skillsResult: { skills: Skill[]; diagnostics: ResourceDiagnostic[] };\n\t\tif (this.noSkills && skillPaths.length === 0) {\n\t\t\tskillsResult = { skills: [], diagnostics: [] };\n\t\t} else {\n\t\t\tskillsResult = loadSkills({\n\t\t\t\tcwd: this.cwd,\n\t\t\t\tagentDir: this.agentDir,\n\t\t\t\tskillPaths,\n\t\t\t\tincludeDefaults: false,\n\t\t\t});\n\t\t}\n\t\tconst resolvedSkills = this.skillsOverride ? this.skillsOverride(skillsResult) : skillsResult;\n\t\tthis.skills = resolvedSkills.skills;\n\t\tthis.skillDiagnostics = resolvedSkills.diagnostics;\n\t\tthis.applyExtensionMetadata(\n\t\t\textensionPaths,\n\t\t\tthis.skills.map((skill) => skill.filePath),\n\t\t);\n\t\tfor (const skill of this.skills) {\n\t\t\tthis.addDefaultMetadataForPath(skill.filePath);\n\t\t}\n\t}\n\n\tprivate updatePromptsFromPaths(\n\t\tpromptPaths: string[],\n\t\textensionPaths: Array<{ path: string; metadata: PathMetadata }> = [],\n\t): void {\n\t\tlet promptsResult: { prompts: PromptTemplate[]; diagnostics: ResourceDiagnostic[] };\n\t\tif (this.noPromptTemplates && promptPaths.length === 0) {\n\t\t\tpromptsResult = { prompts: [], diagnostics: [] };\n\t\t} else {\n\t\t\tconst allPrompts = loadPromptTemplates({\n\t\t\t\tcwd: this.cwd,\n\t\t\t\tagentDir: this.agentDir,\n\t\t\t\tpromptPaths,\n\t\t\t\tincludeDefaults: false,\n\t\t\t});\n\t\t\tconst deduped = this.dedupeResources(allPrompts, {\n\t\t\t\tgetName: (p) => p.name,\n\t\t\t\tgetPath: (p) => p.filePath,\n\t\t\t\tresourceType: \"prompt\",\n\t\t\t\tnamePrefix: \"/\",\n\t\t\t});\n\t\t\tpromptsResult = { prompts: deduped.items, diagnostics: deduped.diagnostics };\n\t\t}\n\t\tconst resolvedPrompts = this.promptsOverride ? this.promptsOverride(promptsResult) : promptsResult;\n\t\tthis.prompts = resolvedPrompts.prompts;\n\t\tthis.promptDiagnostics = resolvedPrompts.diagnostics;\n\t\tthis.applyExtensionMetadata(\n\t\t\textensionPaths,\n\t\t\tthis.prompts.map((prompt) => prompt.filePath),\n\t\t);\n\t\tfor (const prompt of this.prompts) {\n\t\t\tthis.addDefaultMetadataForPath(prompt.filePath);\n\t\t}\n\t}\n\n\tprivate updateThemesFromPaths(\n\t\tthemePaths: string[],\n\t\textensionPaths: Array<{ path: string; metadata: PathMetadata }> = [],\n\t): void {\n\t\tlet themesResult: { themes: Theme[]; diagnostics: ResourceDiagnostic[] };\n\t\tif (this.noThemes && themePaths.length === 0) {\n\t\t\tthemesResult = { themes: [], diagnostics: [] };\n\t\t} else {\n\t\t\tconst loaded = this.loadThemes(themePaths, false);\n\t\t\tconst deduped = this.dedupeResources(loaded.themes, {\n\t\t\t\tgetName: (t) => t.name ?? \"unnamed\",\n\t\t\t\tgetPath: (t) => t.sourcePath,\n\t\t\t\tresourceType: \"theme\",\n\t\t\t});\n\t\t\tthemesResult = { themes: deduped.items, diagnostics: [...loaded.diagnostics, ...deduped.diagnostics] };\n\t\t}\n\t\tconst resolvedThemes = this.themesOverride ? this.themesOverride(themesResult) : themesResult;\n\t\tthis.themes = resolvedThemes.themes;\n\t\tthis.themeDiagnostics = resolvedThemes.diagnostics;\n\t\tconst themePathsWithSource = this.themes.flatMap((theme) => (theme.sourcePath ? [theme.sourcePath] : []));\n\t\tthis.applyExtensionMetadata(extensionPaths, themePathsWithSource);\n\t\tfor (const theme of this.themes) {\n\t\t\tif (theme.sourcePath) {\n\t\t\t\tthis.addDefaultMetadataForPath(theme.sourcePath);\n\t\t\t}\n\t\t}\n\t}\n\n\tprivate applyExtensionMetadata(\n\t\textensionPaths: Array<{ path: string; metadata: PathMetadata }>,\n\t\tresourcePaths: string[],\n\t): void {\n\t\tif (extensionPaths.length === 0) {\n\t\t\treturn;\n\t\t}\n\n\t\tconst normalized = extensionPaths.map((entry) => ({\n\t\t\tpath: resolve(entry.path),\n\t\t\tmetadata: entry.metadata,\n\t\t}));\n\n\t\tfor (const entry of normalized) {\n\t\t\tif (!this.pathMetadata.has(entry.path)) {\n\t\t\t\tthis.pathMetadata.set(entry.path, entry.metadata);\n\t\t\t}\n\t\t}\n\n\t\tfor (const resourcePath of resourcePaths) {\n\t\t\tconst normalizedResourcePath = resolve(resourcePath);\n\t\t\tif (this.pathMetadata.has(normalizedResourcePath) || this.pathMetadata.has(resourcePath)) {\n\t\t\t\tcontinue;\n\t\t\t}\n\t\t\tconst match = normalized.find(\n\t\t\t\t(entry) =>\n\t\t\t\t\tnormalizedResourcePath === entry.path || normalizedResourcePath.startsWith(`${entry.path}${sep}`),\n\t\t\t);\n\t\t\tif (match) {\n\t\t\t\tthis.pathMetadata.set(normalizedResourcePath, match.metadata);\n\t\t\t}\n\t\t}\n\t}\n\n\tprivate mergePaths(primary: string[], additional: string[]): string[] {\n\t\tconst merged: string[] = [];\n\t\tconst seen = new Set<string>();\n\n\t\tfor (const p of [...primary, ...additional]) {\n\t\t\tconst resolved = this.resolveResourcePath(p);\n\t\t\tif (seen.has(resolved)) continue;\n\t\t\tseen.add(resolved);\n\t\t\tmerged.push(resolved);\n\t\t}\n\n\t\treturn merged;\n\t}\n\n\tprivate resolveResourcePath(p: string): string {\n\t\tconst trimmed = p.trim();\n\t\tlet expanded = trimmed;\n\t\tif (trimmed === \"~\") {\n\t\t\texpanded = homedir();\n\t\t} else if (trimmed.startsWith(\"~/\")) {\n\t\t\texpanded = join(homedir(), trimmed.slice(2));\n\t\t} else if (trimmed.startsWith(\"~\")) {\n\t\t\texpanded = join(homedir(), trimmed.slice(1));\n\t\t}\n\t\treturn resolve(this.cwd, expanded);\n\t}\n\n\tprivate loadThemes(\n\t\tpaths: string[],\n\t\tincludeDefaults: boolean = true,\n\t): {\n\t\tthemes: Theme[];\n\t\tdiagnostics: ResourceDiagnostic[];\n\t} {\n\t\tconst themes: Theme[] = [];\n\t\tconst diagnostics: ResourceDiagnostic[] = [];\n\t\tif (includeDefaults) {\n\t\t\tconst defaultDirs = [join(this.agentDir, \"themes\"), join(this.cwd, CONFIG_DIR_NAME, \"themes\")];\n\n\t\t\tfor (const dir of defaultDirs) {\n\t\t\t\tthis.loadThemesFromDir(dir, themes, diagnostics);\n\t\t\t}\n\t\t}\n\n\t\tfor (const p of paths) {\n\t\t\tconst resolved = resolve(this.cwd, p);\n\t\t\tif (!existsSync(resolved)) {\n\t\t\t\tdiagnostics.push({ type: \"warning\", message: \"theme path does not exist\", path: resolved });\n\t\t\t\tcontinue;\n\t\t\t}\n\n\t\t\ttry {\n\t\t\t\tconst stats = statSync(resolved);\n\t\t\t\tif (stats.isDirectory()) {\n\t\t\t\t\tthis.loadThemesFromDir(resolved, themes, diagnostics);\n\t\t\t\t} else if (stats.isFile() && resolved.endsWith(\".json\")) {\n\t\t\t\t\tthis.loadThemeFromFile(resolved, themes, diagnostics);\n\t\t\t\t} else {\n\t\t\t\t\tdiagnostics.push({ type: \"warning\", message: \"theme path is not a json file\", path: resolved });\n\t\t\t\t}\n\t\t\t} catch (error) {\n\t\t\t\tconst message = error instanceof Error ? error.message : \"failed to read theme path\";\n\t\t\t\tdiagnostics.push({ type: \"warning\", message, path: resolved });\n\t\t\t}\n\t\t}\n\n\t\treturn { themes, diagnostics };\n\t}\n\n\tprivate loadThemesFromDir(dir: string, themes: Theme[], diagnostics: ResourceDiagnostic[]): void {\n\t\tif (!existsSync(dir)) {\n\t\t\treturn;\n\t\t}\n\n\t\ttry {\n\t\t\tconst entries = readdirSync(dir, { withFileTypes: true });\n\t\t\tfor (const entry of entries) {\n\t\t\t\tlet isFile = entry.isFile();\n\t\t\t\tif (entry.isSymbolicLink()) {\n\t\t\t\t\ttry {\n\t\t\t\t\t\tisFile = statSync(join(dir, entry.name)).isFile();\n\t\t\t\t\t} catch {\n\t\t\t\t\t\tcontinue;\n\t\t\t\t\t}\n\t\t\t\t}\n\t\t\t\tif (!isFile) {\n\t\t\t\t\tcontinue;\n\t\t\t\t}\n\t\t\t\tif (!entry.name.endsWith(\".json\")) {\n\t\t\t\t\tcontinue;\n\t\t\t\t}\n\t\t\t\tthis.loadThemeFromFile(join(dir, entry.name), themes, diagnostics);\n\t\t\t}\n\t\t} catch (error) {\n\t\t\tconst message = error instanceof Error ? error.message : \"failed to read theme directory\";\n\t\t\tdiagnostics.push({ type: \"warning\", message, path: dir });\n\t\t}\n\t}\n\n\tprivate loadThemeFromFile(filePath: string, themes: Theme[], diagnostics: ResourceDiagnostic[]): void {\n\t\ttry {\n\t\t\tthemes.push(loadThemeFromPath(filePath));\n\t\t} catch (error) {\n\t\t\tconst message = error instanceof Error ? error.message : \"failed to load theme\";\n\t\t\tdiagnostics.push({ type: \"warning\", message, path: filePath });\n\t\t}\n\t}\n\n\tprivate async loadExtensionFactories(runtime: ExtensionRuntime): Promise<{\n\t\textensions: Extension[];\n\t\terrors: Array<{ path: string; error: string }>;\n\t}> {\n\t\tconst extensions: Extension[] = [];\n\t\tconst errors: Array<{ path: string; error: string }> = [];\n\n\t\tfor (const [index, factory] of this.extensionFactories.entries()) {\n\t\t\tconst extensionPath = `<inline:${index + 1}>`;\n\t\t\ttry {\n\t\t\t\tconst extension = await loadExtensionFromFactory(factory, this.cwd, this.eventBus, runtime, extensionPath);\n\t\t\t\textensions.push(extension);\n\t\t\t} catch (error) {\n\t\t\t\tconst message = error instanceof Error ? error.message : \"failed to load extension\";\n\t\t\t\terrors.push({ path: extensionPath, error: message });\n\t\t\t}\n\t\t}\n\n\t\treturn { extensions, errors };\n\t}\n\n\tprivate dedupeResources<T>(\n\t\titems: T[],\n\t\toptions: {\n\t\t\tgetName: (item: T) => string;\n\t\t\tgetPath: (item: T) => string | undefined;\n\t\t\tresourceType: ResourceCollision[\"resourceType\"];\n\t\t\tnamePrefix?: string;\n\t\t},\n\t): { items: T[]; diagnostics: ResourceDiagnostic[] } {\n\t\tconst seen = new Map<string, T>();\n\t\tconst diagnostics: ResourceDiagnostic[] = [];\n\t\tconst { getName, getPath, resourceType, namePrefix = \"\" } = options;\n\n\t\tfor (const item of items) {\n\t\t\tconst name = getName(item);\n\t\t\tconst existing = seen.get(name);\n\t\t\tif (existing) {\n\t\t\t\tdiagnostics.push({\n\t\t\t\t\ttype: \"collision\",\n\t\t\t\t\tmessage: `name \"${namePrefix}${name}\" collision`,\n\t\t\t\t\tpath: getPath(item),\n\t\t\t\t\tcollision: {\n\t\t\t\t\t\tresourceType,\n\t\t\t\t\t\tname,\n\t\t\t\t\t\twinnerPath: getPath(existing) ?? \"<builtin>\",\n\t\t\t\t\t\tloserPath: getPath(item) ?? \"<builtin>\",\n\t\t\t\t\t},\n\t\t\t\t});\n\t\t\t} else {\n\t\t\t\tseen.set(name, item);\n\t\t\t}\n\t\t}\n\n\t\treturn { items: Array.from(seen.values()), diagnostics };\n\t}\n\n\tprivate discoverFileInSearchPaths(filename: string): string | undefined {\n\t\tconst searchDirs = [join(this.cwd, CONFIG_DIR_NAME), this.agentDir];\n\t\tfor (const dir of searchDirs) {\n\t\t\tconst filePath = join(dir, filename);\n\t\t\tif (existsSync(filePath)) {\n\t\t\t\treturn filePath;\n\t\t\t}\n\t\t}\n\t\treturn undefined;\n\t}\n\n\tprivate addDefaultMetadataForPath(filePath: string): void {\n\t\tif (!filePath || filePath.startsWith(\"<\")) {\n\t\t\treturn;\n\t\t}\n\n\t\tconst normalizedPath = resolve(filePath);\n\t\tif (this.pathMetadata.has(normalizedPath) || this.pathMetadata.has(filePath)) {\n\t\t\treturn;\n\t\t}\n\n\t\tconst agentRoots = [\n\t\t\tjoin(this.agentDir, \"skills\"),\n\t\t\tjoin(this.agentDir, \"prompts\"),\n\t\t\tjoin(this.agentDir, \"themes\"),\n\t\t\tjoin(this.agentDir, \"extensions\"),\n\t\t];\n\t\tconst projectRoots = [\n\t\t\tjoin(this.cwd, CONFIG_DIR_NAME, \"skills\"),\n\t\t\tjoin(this.cwd, CONFIG_DIR_NAME, \"prompts\"),\n\t\t\tjoin(this.cwd, CONFIG_DIR_NAME, \"themes\"),\n\t\t\tjoin(this.cwd, CONFIG_DIR_NAME, \"extensions\"),\n\t\t];\n\n\t\tfor (const root of agentRoots) {\n\t\t\tif (this.isUnderPath(normalizedPath, root)) {\n\t\t\t\tthis.pathMetadata.set(normalizedPath, { source: \"local\", scope: \"user\", origin: \"top-level\" });\n\t\t\t\treturn;\n\t\t\t}\n\t\t}\n\n\t\tfor (const root of projectRoots) {\n\t\t\tif (this.isUnderPath(normalizedPath, root)) {\n\t\t\t\tthis.pathMetadata.set(normalizedPath, { source: \"local\", scope: \"project\", origin: \"top-level\" });\n\t\t\t\treturn;\n\t\t\t}\n\t\t}\n\t}\n\n\tprivate isUnderPath(target: string, root: string): boolean {\n\t\tconst normalizedRoot = resolve(root);\n\t\tif (target === normalizedRoot) {\n\t\t\treturn true;\n\t\t}\n\t\tconst prefix = normalizedRoot.endsWith(sep) ? normalizedRoot : `${normalizedRoot}${sep}`;\n\t\treturn target.startsWith(prefix);\n\t}\n\n\tprivate detectExtensionConflicts(extensions: Extension[]): Array<{ path: string; message: string }> {\n\t\tconst conflicts: Array<{ path: string; message: string }> = [];\n\n\t\t// Track which extension registered each tool, command, and flag\n\t\tconst toolOwners = new Map<string, string>();\n\t\tconst commandOwners = new Map<string, string>();\n\t\tconst flagOwners = new Map<string, string>();\n\n\t\tfor (const ext of extensions) {\n\t\t\t// Check tools\n\t\t\tfor (const toolName of ext.tools.keys()) {\n\t\t\t\tconst existingOwner = toolOwners.get(toolName);\n\t\t\t\tif (existingOwner && existingOwner !== ext.path) {\n\t\t\t\t\tconflicts.push({\n\t\t\t\t\t\tpath: ext.path,\n\t\t\t\t\t\tmessage: `Tool \"${toolName}\" conflicts with ${existingOwner}`,\n\t\t\t\t\t});\n\t\t\t\t} else {\n\t\t\t\t\ttoolOwners.set(toolName, ext.path);\n\t\t\t\t}\n\t\t\t}\n\n\t\t\t// Check commands\n\t\t\tfor (const commandName of ext.commands.keys()) {\n\t\t\t\tconst existingOwner = commandOwners.get(commandName);\n\t\t\t\tif (existingOwner && existingOwner !== ext.path) {\n\t\t\t\t\tconflicts.push({\n\t\t\t\t\t\tpath: ext.path,\n\t\t\t\t\t\tmessage: `Command \"/${commandName}\" conflicts with ${existingOwner}`,\n\t\t\t\t\t});\n\t\t\t\t} else {\n\t\t\t\t\tcommandOwners.set(commandName, ext.path);\n\t\t\t\t}\n\t\t\t}\n\n\t\t\t// Check flags\n\t\t\tfor (const flagName of ext.flags.keys()) {\n\t\t\t\tconst existingOwner = flagOwners.get(flagName);\n\t\t\t\tif (existingOwner && existingOwner !== ext.path) {\n\t\t\t\t\tconflicts.push({\n\t\t\t\t\t\tpath: ext.path,\n\t\t\t\t\t\tmessage: `Flag \"--${flagName}\" conflicts with ${existingOwner}`,\n\t\t\t\t\t});\n\t\t\t\t} else {\n\t\t\t\t\tflagOwners.set(flagName, ext.path);\n\t\t\t\t}\n\t\t\t}\n\t\t}\n\n\t\treturn conflicts;\n\t}\n}\n"]}
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{ existsSync, readdirSync, readFileSync, statSync } from \"node:fs\";\nimport { homedir } from \"node:os\";\nimport { join, resolve, sep } from \"node:path\";\nimport chalk from \"chalk\";\nimport { CONFIG_DIR_NAME, getAgentDir } from \"../config.js\";\nimport { loadThemeFromPath, type Theme } from \"../modes/interactive/theme/theme.js\";\nimport type { ResourceCollision, ResourceDiagnostic } from \"./diagnostics.js\";\n\nexport type { ResourceCollision, ResourceDiagnostic } from \"./diagnostics.js\";\n\nimport { createEventBus, type EventBus } from \"./event-bus.js\";\nimport { createExtensionRuntime, loadExtensionFromFactory, loadExtensions } from \"./extensions/loader.js\";\nimport type { Extension, ExtensionFactory, ExtensionRuntime, LoadExtensionsResult } from \"./extensions/types.js\";\nimport { DefaultPackageManager, type PathMetadata } from \"./package-manager.js\";\nimport type { PromptTemplate } from \"./prompt-templates.js\";\nimport { loadPromptTemplates } from \"./prompt-templates.js\";\nimport { SettingsManager } from \"./settings-manager.js\";\nimport type { Skill } from \"./skills.js\";\nimport { loadSkills } from \"./skills.js\";\n\nexport interface ResourceExtensionPaths {\n\tskillPaths?: Array<{ path: string; metadata: PathMetadata }>;\n\tpromptPaths?: Array<{ path: string; metadata: PathMetadata }>;\n\tthemePaths?: Array<{ path: string; metadata: PathMetadata }>;\n}\n\nexport interface ResourceLoader {\n\tgetExtensions(): LoadExtensionsResult;\n\tgetSkills(): { skills: Skill[]; diagnostics: ResourceDiagnostic[] };\n\tgetPrompts(): { prompts: PromptTemplate[]; diagnostics: ResourceDiagnostic[] };\n\tgetThemes(): { themes: Theme[]; diagnostics: ResourceDiagnostic[] };\n\tgetAgentsFiles(): { agentsFiles: Array<{ path: string; content: string }> };\n\tgetSystemPrompt(): string | undefined;\n\tgetAppendSystemPrompt(): string[];\n\tgetPathMetadata(): Map<string, PathMetadata>;\n\textendResources(paths: ResourceExtensionPaths): void;\n\treload(): Promise<void>;\n}\n\nfunction resolvePromptInput(input: string | undefined, description: string): string | undefined {\n\tif (!input) {\n\t\treturn undefined;\n\t}\n\n\tif (existsSync(input)) {\n\t\ttry {\n\t\t\treturn readFileSync(input, \"utf-8\");\n\t\t} catch (error) {\n\t\t\tconsole.error(chalk.yellow(`Warning: Could not read ${description} file ${input}: ${error}`));\n\t\t\treturn input;\n\t\t}\n\t}\n\n\treturn input;\n}\n\nfunction loadContextFileFromDir(dir: string): { path: string; content: string } | null {\n\tconst candidates = [\"AGENTS.md\", \"CLAUDE.md\"];\n\tfor (const filename of candidates) {\n\t\tconst filePath = join(dir, filename);\n\t\tif (existsSync(filePath)) {\n\t\t\ttry {\n\t\t\t\treturn {\n\t\t\t\t\tpath: filePath,\n\t\t\t\t\tcontent: readFileSync(filePath, \"utf-8\"),\n\t\t\t\t};\n\t\t\t} catch (error) {\n\t\t\t\tconsole.error(chalk.yellow(`Warning: Could not read ${filePath}: ${error}`));\n\t\t\t}\n\t\t}\n\t}\n\treturn null;\n}\n\nfunction loadProjectContextFiles(\n\toptions: { cwd?: string; agentDir?: string } = {},\n): Array<{ path: string; content: string }> {\n\tconst resolvedCwd = options.cwd ?? process.cwd();\n\tconst resolvedAgentDir = options.agentDir ?? getAgentDir();\n\n\tconst contextFiles: Array<{ path: string; content: string }> = [];\n\tconst seenPaths = new Set<string>();\n\n\tconst globalContext = loadContextFileFromDir(resolvedAgentDir);\n\tif (globalContext) {\n\t\tcontextFiles.push(globalContext);\n\t\tseenPaths.add(globalContext.path);\n\t}\n\n\tconst ancestorContextFiles: Array<{ path: string; content: string }> = [];\n\n\tlet currentDir = resolvedCwd;\n\tconst root = resolve(\"/\");\n\n\twhile (true) {\n\t\tconst contextFile = loadContextFileFromDir(currentDir);\n\t\tif (contextFile && !seenPaths.has(contextFile.path)) {\n\t\t\tancestorContextFiles.unshift(contextFile);\n\t\t\tseenPaths.add(contextFile.path);\n\t\t}\n\n\t\tif (currentDir === root) break;\n\n\t\tconst parentDir = resolve(currentDir, \"..\");\n\t\tif (parentDir === currentDir) break;\n\t\tcurrentDir = parentDir;\n\t}\n\n\tcontextFiles.push(...ancestorContextFiles);\n\n\treturn contextFiles;\n}\n\nexport interface DefaultResourceLoaderOptions {\n\tcwd?: string;\n\tagentDir?: string;\n\tsettingsManager?: SettingsManager;\n\teventBus?: EventBus;\n\tadditionalExtensionPaths?: string[];\n\tadditionalSkillPaths?: string[];\n\tadditionalPromptTemplatePaths?: string[];\n\tadditionalThemePaths?: string[];\n\textensionFactories?: ExtensionFactory[];\n\tnoExtensions?: boolean;\n\tnoSkills?: boolean;\n\tnoPromptTemplates?: boolean;\n\tnoThemes?: boolean;\n\tsystemPrompt?: string;\n\tappendSystemPrompt?: string;\n\textensionsOverride?: (base: LoadExtensionsResult) => LoadExtensionsResult;\n\tskillsOverride?: (base: { skills: Skill[]; diagnostics: ResourceDiagnostic[] }) => {\n\t\tskills: Skill[];\n\t\tdiagnostics: ResourceDiagnostic[];\n\t};\n\tpromptsOverride?: (base: { prompts: PromptTemplate[]; diagnostics: ResourceDiagnostic[] }) => {\n\t\tprompts: PromptTemplate[];\n\t\tdiagnostics: ResourceDiagnostic[];\n\t};\n\tthemesOverride?: (base: { themes: Theme[]; diagnostics: ResourceDiagnostic[] }) => {\n\t\tthemes: Theme[];\n\t\tdiagnostics: ResourceDiagnostic[];\n\t};\n\tagentsFilesOverride?: (base: { agentsFiles: Array<{ path: string; content: string }> }) => {\n\t\tagentsFiles: Array<{ path: string; content: string }>;\n\t};\n\tsystemPromptOverride?: (base: string | undefined) => string | undefined;\n\tappendSystemPromptOverride?: (base: string[]) => string[];\n}\n\nexport class DefaultResourceLoader implements ResourceLoader {\n\tprivate cwd: string;\n\tprivate agentDir: string;\n\tprivate settingsManager: SettingsManager;\n\tprivate eventBus: EventBus;\n\tprivate packageManager: DefaultPackageManager;\n\tprivate additionalExtensionPaths: string[];\n\tprivate additionalSkillPaths: string[];\n\tprivate additionalPromptTemplatePaths: string[];\n\tprivate additionalThemePaths: string[];\n\tprivate extensionFactories: ExtensionFactory[];\n\tprivate noExtensions: boolean;\n\tprivate noSkills: boolean;\n\tprivate noPromptTemplates: boolean;\n\tprivate noThemes: boolean;\n\tprivate systemPromptSource?: string;\n\tprivate appendSystemPromptSource?: string;\n\tprivate extensionsOverride?: (base: LoadExtensionsResult) => LoadExtensionsResult;\n\tprivate skillsOverride?: (base: { skills: Skill[]; diagnostics: ResourceDiagnostic[] }) => {\n\t\tskills: Skill[];\n\t\tdiagnostics: ResourceDiagnostic[];\n\t};\n\tprivate promptsOverride?: (base: { prompts: PromptTemplate[]; diagnostics: ResourceDiagnostic[] }) => {\n\t\tprompts: PromptTemplate[];\n\t\tdiagnostics: ResourceDiagnostic[];\n\t};\n\tprivate themesOverride?: (base: { themes: Theme[]; diagnostics: ResourceDiagnostic[] }) => {\n\t\tthemes: Theme[];\n\t\tdiagnostics: ResourceDiagnostic[];\n\t};\n\tprivate agentsFilesOverride?: (base: { agentsFiles: Array<{ path: string; content: string }> }) => {\n\t\tagentsFiles: Array<{ path: string; content: string }>;\n\t};\n\tprivate systemPromptOverride?: (base: string | undefined) => string | undefined;\n\tprivate appendSystemPromptOverride?: (base: string[]) => string[];\n\n\tprivate extensionsResult: LoadExtensionsResult;\n\tprivate skills: Skill[];\n\tprivate skillDiagnostics: ResourceDiagnostic[];\n\tprivate prompts: PromptTemplate[];\n\tprivate promptDiagnostics: ResourceDiagnostic[];\n\tprivate themes: Theme[];\n\tprivate themeDiagnostics: ResourceDiagnostic[];\n\tprivate agentsFiles: Array<{ path: string; content: string }>;\n\tprivate systemPrompt?: string;\n\tprivate appendSystemPrompt: string[];\n\tprivate pathMetadata: Map<string, PathMetadata>;\n\tprivate lastSkillPaths: string[];\n\tprivate lastPromptPaths: string[];\n\tprivate lastThemePaths: string[];\n\n\tconstructor(options: DefaultResourceLoaderOptions) {\n\t\tthis.cwd = options.cwd ?? process.cwd();\n\t\tthis.agentDir = options.agentDir ?? getAgentDir();\n\t\tthis.settingsManager = options.settingsManager ?? SettingsManager.create(this.cwd, this.agentDir);\n\t\tthis.eventBus = options.eventBus ?? createEventBus();\n\t\tthis.packageManager = new DefaultPackageManager({\n\t\t\tcwd: this.cwd,\n\t\t\tagentDir: this.agentDir,\n\t\t\tsettingsManager: this.settingsManager,\n\t\t});\n\t\tthis.additionalExtensionPaths = options.additionalExtensionPaths ?? [];\n\t\tthis.additionalSkillPaths = options.additionalSkillPaths ?? [];\n\t\tthis.additionalPromptTemplatePaths = options.additionalPromptTemplatePaths ?? [];\n\t\tthis.additionalThemePaths = options.additionalThemePaths ?? [];\n\t\tthis.extensionFactories = options.extensionFactories ?? [];\n\t\tthis.noExtensions = options.noExtensions ?? false;\n\t\tthis.noSkills = options.noSkills ?? false;\n\t\tthis.noPromptTemplates = options.noPromptTemplates ?? false;\n\t\tthis.noThemes = options.noThemes ?? false;\n\t\tthis.systemPromptSource = options.systemPrompt;\n\t\tthis.appendSystemPromptSource = options.appendSystemPrompt;\n\t\tthis.extensionsOverride = options.extensionsOverride;\n\t\tthis.skillsOverride = options.skillsOverride;\n\t\tthis.promptsOverride = options.promptsOverride;\n\t\tthis.themesOverride = options.themesOverride;\n\t\tthis.agentsFilesOverride = options.agentsFilesOverride;\n\t\tthis.systemPromptOverride = options.systemPromptOverride;\n\t\tthis.appendSystemPromptOverride = options.appendSystemPromptOverride;\n\n\t\tthis.extensionsResult = { extensions: [], errors: [], runtime: createExtensionRuntime() };\n\t\tthis.skills = [];\n\t\tthis.skillDiagnostics = [];\n\t\tthis.prompts = [];\n\t\tthis.promptDiagnostics = [];\n\t\tthis.themes = [];\n\t\tthis.themeDiagnostics = [];\n\t\tthis.agentsFiles = [];\n\t\tthis.appendSystemPrompt = [];\n\t\tthis.pathMetadata = new Map();\n\t\tthis.lastSkillPaths = [];\n\t\tthis.lastPromptPaths = [];\n\t\tthis.lastThemePaths = [];\n\t}\n\n\tgetExtensions(): LoadExtensionsResult {\n\t\treturn this.extensionsResult;\n\t}\n\n\tgetSkills(): { skills: Skill[]; diagnostics: ResourceDiagnostic[] } {\n\t\treturn { skills: this.skills, diagnostics: this.skillDiagnostics };\n\t}\n\n\tgetPrompts(): { prompts: PromptTemplate[]; diagnostics: ResourceDiagnostic[] } {\n\t\treturn { prompts: this.prompts, diagnostics: this.promptDiagnostics };\n\t}\n\n\tgetThemes(): { themes: Theme[]; diagnostics: ResourceDiagnostic[] } {\n\t\treturn { themes: this.themes, diagnostics: this.themeDiagnostics };\n\t}\n\n\tgetAgentsFiles(): { agentsFiles: Array<{ path: string; content: string }> } {\n\t\treturn { agentsFiles: this.agentsFiles };\n\t}\n\n\tgetSystemPrompt(): string | undefined {\n\t\treturn this.systemPrompt;\n\t}\n\n\tgetAppendSystemPrompt(): string[] {\n\t\treturn this.appendSystemPrompt;\n\t}\n\n\tgetPathMetadata(): Map<string, PathMetadata> {\n\t\treturn this.pathMetadata;\n\t}\n\n\textendResources(paths: ResourceExtensionPaths): void {\n\t\tconst skillPaths = this.normalizeExtensionPaths(paths.skillPaths ?? []);\n\t\tconst promptPaths = this.normalizeExtensionPaths(paths.promptPaths ?? []);\n\t\tconst themePaths = this.normalizeExtensionPaths(paths.themePaths ?? []);\n\n\t\tif (skillPaths.length > 0) {\n\t\t\tthis.lastSkillPaths = this.mergePaths(\n\t\t\t\tthis.lastSkillPaths,\n\t\t\t\tskillPaths.map((entry) => entry.path),\n\t\t\t);\n\t\t\tthis.updateSkillsFromPaths(this.lastSkillPaths, skillPaths);\n\t\t}\n\n\t\tif (promptPaths.length > 0) {\n\t\t\tthis.lastPromptPaths = this.mergePaths(\n\t\t\t\tthis.lastPromptPaths,\n\t\t\t\tpromptPaths.map((entry) => entry.path),\n\t\t\t);\n\t\t\tthis.updatePromptsFromPaths(this.lastPromptPaths, promptPaths);\n\t\t}\n\n\t\tif (themePaths.length > 0) {\n\t\t\tthis.lastThemePaths = this.mergePaths(\n\t\t\t\tthis.lastThemePaths,\n\t\t\t\tthemePaths.map((entry) => entry.path),\n\t\t\t);\n\t\t\tthis.updateThemesFromPaths(this.lastThemePaths, themePaths);\n\t\t}\n\t}\n\n\tasync reload(): Promise<void> {\n\t\tconst resolvedPaths = await this.packageManager.resolve();\n\t\tconst cliExtensionPaths = await this.packageManager.resolveExtensionSources(this.additionalExtensionPaths, {\n\t\t\ttemporary: true,\n\t\t});\n\n\t\t// Helper to extract enabled paths and store metadata\n\t\tconst getEnabledResources = (\n\t\t\tresources: Array<{ path: string; enabled: boolean; metadata: PathMetadata }>,\n\t\t): Array<{ path: string; enabled: boolean; metadata: PathMetadata }> => {\n\t\t\tfor (const r of resources) {\n\t\t\t\tif (!this.pathMetadata.has(r.path)) {\n\t\t\t\t\tthis.pathMetadata.set(r.path, r.metadata);\n\t\t\t\t}\n\t\t\t}\n\t\t\treturn resources.filter((r) => r.enabled);\n\t\t};\n\n\t\tconst getEnabledPaths = (\n\t\t\tresources: Array<{ path: string; enabled: boolean; metadata: PathMetadata }>,\n\t\t): string[] => getEnabledResources(resources).map((r) => r.path);\n\n\t\t// Store metadata and get enabled paths\n\t\tthis.pathMetadata = new Map();\n\t\tconst enabledExtensions = getEnabledPaths(resolvedPaths.extensions);\n\t\tconst enabledSkillResources = getEnabledResources(resolvedPaths.skills);\n\t\tconst enabledPrompts = getEnabledPaths(resolvedPaths.prompts);\n\t\tconst enabledThemes = getEnabledPaths(resolvedPaths.themes);\n\n\t\tconst mapSkillPath = (resource: { path: string; metadata: PathMetadata }): string => {\n\t\t\tif (resource.metadata.source !== \"auto\" && resource.metadata.origin !== \"package\") {\n\t\t\t\treturn resource.path;\n\t\t\t}\n\t\t\ttry {\n\t\t\t\tconst stats = statSync(resource.path);\n\t\t\t\tif (!stats.isDirectory()) {\n\t\t\t\t\treturn resource.path;\n\t\t\t\t}\n\t\t\t} catch {\n\t\t\t\treturn resource.path;\n\t\t\t}\n\t\t\tconst skillFile = join(resource.path, \"SKILL.md\");\n\t\t\tif (existsSync(skillFile)) {\n\t\t\t\tif (!this.pathMetadata.has(skillFile)) {\n\t\t\t\t\tthis.pathMetadata.set(skillFile, resource.metadata);\n\t\t\t\t}\n\t\t\t\treturn skillFile;\n\t\t\t}\n\t\t\treturn resource.path;\n\t\t};\n\n\t\tconst enabledSkills = enabledSkillResources.map(mapSkillPath);\n\n\t\t// Add CLI paths metadata\n\t\tfor (const r of cliExtensionPaths.extensions) {\n\t\t\tif (!this.pathMetadata.has(r.path)) {\n\t\t\t\tthis.pathMetadata.set(r.path, { source: \"cli\", scope: \"temporary\", origin: \"top-level\" });\n\t\t\t}\n\t\t}\n\t\tfor (const r of cliExtensionPaths.skills) {\n\t\t\tif (!this.pathMetadata.has(r.path)) {\n\t\t\t\tthis.pathMetadata.set(r.path, { source: \"cli\", scope: \"temporary\", origin: \"top-level\" });\n\t\t\t}\n\t\t}\n\n\t\tconst cliEnabledExtensions = getEnabledPaths(cliExtensionPaths.extensions);\n\t\tconst cliEnabledSkills = getEnabledPaths(cliExtensionPaths.skills);\n\t\tconst cliEnabledPrompts = getEnabledPaths(cliExtensionPaths.prompts);\n\t\tconst cliEnabledThemes = getEnabledPaths(cliExtensionPaths.themes);\n\n\t\tconst extensionPaths = this.noExtensions\n\t\t\t? cliEnabledExtensions\n\t\t\t: this.mergePaths(cliEnabledExtensions, enabledExtensions);\n\n\t\tconst extensionsResult = await loadExtensions(extensionPaths, this.cwd, this.eventBus);\n\t\tconst inlineExtensions = await this.loadExtensionFactories(extensionsResult.runtime);\n\t\textensionsResult.extensions.push(...inlineExtensions.extensions);\n\t\textensionsResult.errors.push(...inlineExtensions.errors);\n\n\t\t// Detect extension conflicts (tools, commands, flags with same names from different extensions)\n\t\t// Keep all extensions loaded. Conflicts are reported as diagnostics, and precedence is handled by load order.\n\t\tconst conflicts = this.detectExtensionConflicts(extensionsResult.extensions);\n\t\tfor (const conflict of conflicts) {\n\t\t\textensionsResult.errors.push({ path: conflict.path, error: conflict.message });\n\t\t}\n\n\t\tthis.extensionsResult = this.extensionsOverride ? this.extensionsOverride(extensionsResult) : extensionsResult;\n\n\t\tconst skillPaths = this.noSkills\n\t\t\t? this.mergePaths(cliEnabledSkills, this.additionalSkillPaths)\n\t\t\t: this.mergePaths([...enabledSkills, ...cliEnabledSkills], this.additionalSkillPaths);\n\n\t\tthis.lastSkillPaths = skillPaths;\n\t\tthis.updateSkillsFromPaths(skillPaths);\n\n\t\tconst promptPaths = this.noPromptTemplates\n\t\t\t? this.mergePaths(cliEnabledPrompts, this.additionalPromptTemplatePaths)\n\t\t\t: this.mergePaths([...enabledPrompts, ...cliEnabledPrompts], this.additionalPromptTemplatePaths);\n\n\t\tthis.lastPromptPaths = promptPaths;\n\t\tthis.updatePromptsFromPaths(promptPaths);\n\n\t\tconst themePaths = this.noThemes\n\t\t\t? this.mergePaths(cliEnabledThemes, this.additionalThemePaths)\n\t\t\t: this.mergePaths([...enabledThemes, ...cliEnabledThemes], this.additionalThemePaths);\n\n\t\tthis.lastThemePaths = themePaths;\n\t\tthis.updateThemesFromPaths(themePaths);\n\n\t\tfor (const extension of this.extensionsResult.extensions) {\n\t\t\tthis.addDefaultMetadataForPath(extension.path);\n\t\t}\n\n\t\tconst agentsFiles = { agentsFiles: loadProjectContextFiles({ cwd: this.cwd, agentDir: this.agentDir }) };\n\t\tconst resolvedAgentsFiles = this.agentsFilesOverride ? this.agentsFilesOverride(agentsFiles) : agentsFiles;\n\t\tthis.agentsFiles = resolvedAgentsFiles.agentsFiles;\n\n\t\tconst baseSystemPrompt = resolvePromptInput(\n\t\t\tthis.systemPromptSource ?? this.discoverFileInSearchPaths(\"SYSTEM.md\"),\n\t\t\t\"system prompt\",\n\t\t);\n\t\tthis.systemPrompt = this.systemPromptOverride ? this.systemPromptOverride(baseSystemPrompt) : baseSystemPrompt;\n\n\t\tconst appendSource = this.appendSystemPromptSource ?? this.discoverFileInSearchPaths(\"APPEND_SYSTEM.md\");\n\t\tconst resolvedAppend = resolvePromptInput(appendSource, \"append system prompt\");\n\t\tconst baseAppend = resolvedAppend ? [resolvedAppend] : [];\n\t\tthis.appendSystemPrompt = this.appendSystemPromptOverride\n\t\t\t? this.appendSystemPromptOverride(baseAppend)\n\t\t\t: baseAppend;\n\t}\n\n\tprivate normalizeExtensionPaths(\n\t\tentries: Array<{ path: string; metadata: PathMetadata }>,\n\t): Array<{ path: string; metadata: PathMetadata }> {\n\t\treturn entries.map((entry) => ({\n\t\t\tpath: this.resolveResourcePath(entry.path),\n\t\t\tmetadata: entry.metadata,\n\t\t}));\n\t}\n\n\tprivate updateSkillsFromPaths(\n\t\tskillPaths: string[],\n\t\textensionPaths: Array<{ path: string; metadata: PathMetadata }> = [],\n\t): void {\n\t\tlet skillsResult: { skills: Skill[]; diagnostics: ResourceDiagnostic[] };\n\t\tif (this.noSkills && skillPaths.length === 0) {\n\t\t\tskillsResult = { skills: [], diagnostics: [] };\n\t\t} else {\n\t\t\tskillsResult = loadSkills({\n\t\t\t\tcwd: this.cwd,\n\t\t\t\tagentDir: this.agentDir,\n\t\t\t\tskillPaths,\n\t\t\t\tincludeDefaults: false,\n\t\t\t});\n\t\t}\n\t\tconst resolvedSkills = this.skillsOverride ? this.skillsOverride(skillsResult) : skillsResult;\n\t\tthis.skills = resolvedSkills.skills;\n\t\tthis.skillDiagnostics = resolvedSkills.diagnostics;\n\t\tthis.applyExtensionMetadata(\n\t\t\textensionPaths,\n\t\t\tthis.skills.map((skill) => skill.filePath),\n\t\t);\n\t\tfor (const skill of this.skills) {\n\t\t\tthis.addDefaultMetadataForPath(skill.filePath);\n\t\t}\n\t}\n\n\tprivate updatePromptsFromPaths(\n\t\tpromptPaths: string[],\n\t\textensionPaths: Array<{ path: string; metadata: PathMetadata }> = [],\n\t): void {\n\t\tlet promptsResult: { prompts: PromptTemplate[]; diagnostics: ResourceDiagnostic[] };\n\t\tif (this.noPromptTemplates && promptPaths.length === 0) {\n\t\t\tpromptsResult = { prompts: [], diagnostics: [] };\n\t\t} else {\n\t\t\tconst allPrompts = loadPromptTemplates({\n\t\t\t\tcwd: this.cwd,\n\t\t\t\tagentDir: this.agentDir,\n\t\t\t\tpromptPaths,\n\t\t\t\tincludeDefaults: false,\n\t\t\t});\n\t\t\tconst deduped = this.dedupeResources(allPrompts, {\n\t\t\t\tgetName: (p) => p.name,\n\t\t\t\tgetPath: (p) => p.filePath,\n\t\t\t\tresourceType: \"prompt\",\n\t\t\t\tnamePrefix: \"/\",\n\t\t\t});\n\t\t\tpromptsResult = { prompts: deduped.items, diagnostics: deduped.diagnostics };\n\t\t}\n\t\tconst resolvedPrompts = this.promptsOverride ? this.promptsOverride(promptsResult) : promptsResult;\n\t\tthis.prompts = resolvedPrompts.prompts;\n\t\tthis.promptDiagnostics = resolvedPrompts.diagnostics;\n\t\tthis.applyExtensionMetadata(\n\t\t\textensionPaths,\n\t\t\tthis.prompts.map((prompt) => prompt.filePath),\n\t\t);\n\t\tfor (const prompt of this.prompts) {\n\t\t\tthis.addDefaultMetadataForPath(prompt.filePath);\n\t\t}\n\t}\n\n\tprivate updateThemesFromPaths(\n\t\tthemePaths: string[],\n\t\textensionPaths: Array<{ path: string; metadata: PathMetadata }> = [],\n\t): void {\n\t\tlet themesResult: { themes: Theme[]; diagnostics: ResourceDiagnostic[] };\n\t\tif (this.noThemes && themePaths.length === 0) {\n\t\t\tthemesResult = { themes: [], diagnostics: [] };\n\t\t} else {\n\t\t\tconst loaded = this.loadThemes(themePaths, false);\n\t\t\tconst deduped = this.dedupeResources(loaded.themes, {\n\t\t\t\tgetName: (t) => t.name ?? \"unnamed\",\n\t\t\t\tgetPath: (t) => t.sourcePath,\n\t\t\t\tresourceType: \"theme\",\n\t\t\t});\n\t\t\tthemesResult = { themes: deduped.items, diagnostics: [...loaded.diagnostics, ...deduped.diagnostics] };\n\t\t}\n\t\tconst resolvedThemes = this.themesOverride ? this.themesOverride(themesResult) : themesResult;\n\t\tthis.themes = resolvedThemes.themes;\n\t\tthis.themeDiagnostics = resolvedThemes.diagnostics;\n\t\tconst themePathsWithSource = this.themes.flatMap((theme) => (theme.sourcePath ? [theme.sourcePath] : []));\n\t\tthis.applyExtensionMetadata(extensionPaths, themePathsWithSource);\n\t\tfor (const theme of this.themes) {\n\t\t\tif (theme.sourcePath) {\n\t\t\t\tthis.addDefaultMetadataForPath(theme.sourcePath);\n\t\t\t}\n\t\t}\n\t}\n\n\tprivate applyExtensionMetadata(\n\t\textensionPaths: Array<{ path: string; metadata: PathMetadata }>,\n\t\tresourcePaths: string[],\n\t): void {\n\t\tif (extensionPaths.length === 0) {\n\t\t\treturn;\n\t\t}\n\n\t\tconst normalized = extensionPaths.map((entry) => ({\n\t\t\tpath: resolve(entry.path),\n\t\t\tmetadata: entry.metadata,\n\t\t}));\n\n\t\tfor (const entry of normalized) {\n\t\t\tif (!this.pathMetadata.has(entry.path)) {\n\t\t\t\tthis.pathMetadata.set(entry.path, entry.metadata);\n\t\t\t}\n\t\t}\n\n\t\tfor (const resourcePath of resourcePaths) {\n\t\t\tconst normalizedResourcePath = resolve(resourcePath);\n\t\t\tif (this.pathMetadata.has(normalizedResourcePath) || this.pathMetadata.has(resourcePath)) {\n\t\t\t\tcontinue;\n\t\t\t}\n\t\t\tconst match = normalized.find(\n\t\t\t\t(entry) =>\n\t\t\t\t\tnormalizedResourcePath === entry.path || normalizedResourcePath.startsWith(`${entry.path}${sep}`),\n\t\t\t);\n\t\t\tif (match) {\n\t\t\t\tthis.pathMetadata.set(normalizedResourcePath, match.metadata);\n\t\t\t}\n\t\t}\n\t}\n\n\tprivate mergePaths(primary: string[], additional: string[]): string[] {\n\t\tconst merged: string[] = [];\n\t\tconst seen = new Set<string>();\n\n\t\tfor (const p of [...primary, ...additional]) {\n\t\t\tconst resolved = this.resolveResourcePath(p);\n\t\t\tif (seen.has(resolved)) continue;\n\t\t\tseen.add(resolved);\n\t\t\tmerged.push(resolved);\n\t\t}\n\n\t\treturn merged;\n\t}\n\n\tprivate resolveResourcePath(p: string): string {\n\t\tconst trimmed = p.trim();\n\t\tlet expanded = trimmed;\n\t\tif (trimmed === \"~\") {\n\t\t\texpanded = homedir();\n\t\t} else if (trimmed.startsWith(\"~/\")) {\n\t\t\texpanded = join(homedir(), trimmed.slice(2));\n\t\t} else if (trimmed.startsWith(\"~\")) {\n\t\t\texpanded = join(homedir(), trimmed.slice(1));\n\t\t}\n\t\treturn resolve(this.cwd, expanded);\n\t}\n\n\tprivate loadThemes(\n\t\tpaths: string[],\n\t\tincludeDefaults: boolean = true,\n\t): {\n\t\tthemes: Theme[];\n\t\tdiagnostics: ResourceDiagnostic[];\n\t} {\n\t\tconst themes: Theme[] = [];\n\t\tconst diagnostics: ResourceDiagnostic[] = [];\n\t\tif (includeDefaults) {\n\t\t\tconst defaultDirs = [join(this.agentDir, \"themes\"), join(this.cwd, CONFIG_DIR_NAME, \"themes\")];\n\n\t\t\tfor (const dir of defaultDirs) {\n\t\t\t\tthis.loadThemesFromDir(dir, themes, diagnostics);\n\t\t\t}\n\t\t}\n\n\t\tfor (const p of paths) {\n\t\t\tconst resolved = resolve(this.cwd, p);\n\t\t\tif (!existsSync(resolved)) {\n\t\t\t\tdiagnostics.push({ type: \"warning\", message: \"theme path does not exist\", path: resolved });\n\t\t\t\tcontinue;\n\t\t\t}\n\n\t\t\ttry {\n\t\t\t\tconst stats = statSync(resolved);\n\t\t\t\tif (stats.isDirectory()) {\n\t\t\t\t\tthis.loadThemesFromDir(resolved, themes, diagnostics);\n\t\t\t\t} else if (stats.isFile() && resolved.endsWith(\".json\")) {\n\t\t\t\t\tthis.loadThemeFromFile(resolved, themes, diagnostics);\n\t\t\t\t} else {\n\t\t\t\t\tdiagnostics.push({ type: \"warning\", message: \"theme path is not a json file\", path: resolved });\n\t\t\t\t}\n\t\t\t} catch (error) {\n\t\t\t\tconst message = error instanceof Error ? error.message : \"failed to read theme path\";\n\t\t\t\tdiagnostics.push({ type: \"warning\", message, path: resolved });\n\t\t\t}\n\t\t}\n\n\t\treturn { themes, diagnostics };\n\t}\n\n\tprivate loadThemesFromDir(dir: string, themes: Theme[], diagnostics: ResourceDiagnostic[]): void {\n\t\tif (!existsSync(dir)) {\n\t\t\treturn;\n\t\t}\n\n\t\ttry {\n\t\t\tconst entries = readdirSync(dir, { withFileTypes: true });\n\t\t\tfor (const entry of entries) {\n\t\t\t\tlet isFile = entry.isFile();\n\t\t\t\tif (entry.isSymbolicLink()) {\n\t\t\t\t\ttry {\n\t\t\t\t\t\tisFile = statSync(join(dir, entry.name)).isFile();\n\t\t\t\t\t} catch {\n\t\t\t\t\t\tcontinue;\n\t\t\t\t\t}\n\t\t\t\t}\n\t\t\t\tif (!isFile) {\n\t\t\t\t\tcontinue;\n\t\t\t\t}\n\t\t\t\tif (!entry.name.endsWith(\".json\")) {\n\t\t\t\t\tcontinue;\n\t\t\t\t}\n\t\t\t\tthis.loadThemeFromFile(join(dir, entry.name), themes, diagnostics);\n\t\t\t}\n\t\t} catch (error) {\n\t\t\tconst message = error instanceof Error ? error.message : \"failed to read theme directory\";\n\t\t\tdiagnostics.push({ type: \"warning\", message, path: dir });\n\t\t}\n\t}\n\n\tprivate loadThemeFromFile(filePath: string, themes: Theme[], diagnostics: ResourceDiagnostic[]): void {\n\t\ttry {\n\t\t\tthemes.push(loadThemeFromPath(filePath));\n\t\t} catch (error) {\n\t\t\tconst message = error instanceof Error ? error.message : \"failed to load theme\";\n\t\t\tdiagnostics.push({ type: \"warning\", message, path: filePath });\n\t\t}\n\t}\n\n\tprivate async loadExtensionFactories(runtime: ExtensionRuntime): Promise<{\n\t\textensions: Extension[];\n\t\terrors: Array<{ path: string; error: string }>;\n\t}> {\n\t\tconst extensions: Extension[] = [];\n\t\tconst errors: Array<{ path: string; error: string }> = [];\n\n\t\tfor (const [index, factory] of this.extensionFactories.entries()) {\n\t\t\tconst extensionPath = `<inline:${index + 1}>`;\n\t\t\ttry {\n\t\t\t\tconst extension = await loadExtensionFromFactory(factory, this.cwd, this.eventBus, runtime, extensionPath);\n\t\t\t\textensions.push(extension);\n\t\t\t} catch (error) {\n\t\t\t\tconst message = error instanceof Error ? error.message : \"failed to load extension\";\n\t\t\t\terrors.push({ path: extensionPath, error: message });\n\t\t\t}\n\t\t}\n\n\t\treturn { extensions, errors };\n\t}\n\n\tprivate dedupeResources<T>(\n\t\titems: T[],\n\t\toptions: {\n\t\t\tgetName: (item: T) => string;\n\t\t\tgetPath: (item: T) => string | undefined;\n\t\t\tresourceType: ResourceCollision[\"resourceType\"];\n\t\t\tnamePrefix?: string;\n\t\t},\n\t): { items: T[]; diagnostics: ResourceDiagnostic[] } {\n\t\tconst seen = new Map<string, T>();\n\t\tconst diagnostics: ResourceDiagnostic[] = [];\n\t\tconst { getName, getPath, resourceType, namePrefix = \"\" } = options;\n\n\t\tfor (const item of items) {\n\t\t\tconst name = getName(item);\n\t\t\tconst existing = seen.get(name);\n\t\t\tif (existing) {\n\t\t\t\tdiagnostics.push({\n\t\t\t\t\ttype: \"collision\",\n\t\t\t\t\tmessage: `name \"${namePrefix}${name}\" collision`,\n\t\t\t\t\tpath: getPath(item),\n\t\t\t\t\tcollision: {\n\t\t\t\t\t\tresourceType,\n\t\t\t\t\t\tname,\n\t\t\t\t\t\twinnerPath: getPath(existing) ?? \"<builtin>\",\n\t\t\t\t\t\tloserPath: getPath(item) ?? \"<builtin>\",\n\t\t\t\t\t},\n\t\t\t\t});\n\t\t\t} else {\n\t\t\t\tseen.set(name, item);\n\t\t\t}\n\t\t}\n\n\t\treturn { items: Array.from(seen.values()), diagnostics };\n\t}\n\n\tprivate discoverFileInSearchPaths(filename: string): string | undefined {\n\t\tconst searchDirs = [join(this.cwd, CONFIG_DIR_NAME), this.agentDir];\n\t\tfor (const dir of searchDirs) {\n\t\t\tconst filePath = join(dir, filename);\n\t\t\tif (existsSync(filePath)) {\n\t\t\t\treturn filePath;\n\t\t\t}\n\t\t}\n\t\treturn undefined;\n\t}\n\n\tprivate addDefaultMetadataForPath(filePath: string): void {\n\t\tif (!filePath || filePath.startsWith(\"<\")) {\n\t\t\treturn;\n\t\t}\n\n\t\tconst normalizedPath = resolve(filePath);\n\t\tif (this.pathMetadata.has(normalizedPath) || this.pathMetadata.has(filePath)) {\n\t\t\treturn;\n\t\t}\n\n\t\tconst agentRoots = [\n\t\t\tjoin(this.agentDir, \"skills\"),\n\t\t\tjoin(this.agentDir, \"prompts\"),\n\t\t\tjoin(this.agentDir, \"themes\"),\n\t\t\tjoin(this.agentDir, \"extensions\"),\n\t\t];\n\t\tconst projectRoots = [\n\t\t\tjoin(this.cwd, CONFIG_DIR_NAME, \"skills\"),\n\t\t\tjoin(this.cwd, CONFIG_DIR_NAME, \"prompts\"),\n\t\t\tjoin(this.cwd, CONFIG_DIR_NAME, \"themes\"),\n\t\t\tjoin(this.cwd, CONFIG_DIR_NAME, \"extensions\"),\n\t\t];\n\n\t\tfor (const root of agentRoots) {\n\t\t\tif (this.isUnderPath(normalizedPath, root)) {\n\t\t\t\tthis.pathMetadata.set(normalizedPath, { source: \"local\", scope: \"user\", origin: \"top-level\" });\n\t\t\t\treturn;\n\t\t\t}\n\t\t}\n\n\t\tfor (const root of projectRoots) {\n\t\t\tif (this.isUnderPath(normalizedPath, root)) {\n\t\t\t\tthis.pathMetadata.set(normalizedPath, { source: \"local\", scope: \"project\", origin: \"top-level\" });\n\t\t\t\treturn;\n\t\t\t}\n\t\t}\n\t}\n\n\tprivate isUnderPath(target: string, root: string): boolean {\n\t\tconst normalizedRoot = resolve(root);\n\t\tif (target === normalizedRoot) {\n\t\t\treturn true;\n\t\t}\n\t\tconst prefix = normalizedRoot.endsWith(sep) ? normalizedRoot : `${normalizedRoot}${sep}`;\n\t\treturn target.startsWith(prefix);\n\t}\n\n\tprivate detectExtensionConflicts(extensions: Extension[]): Array<{ path: string; message: string }> {\n\t\tconst conflicts: Array<{ path: string; message: string }> = [];\n\n\t\t// Track which extension registered each tool, command, and flag\n\t\tconst toolOwners = new Map<string, string>();\n\t\tconst commandOwners = new Map<string, string>();\n\t\tconst flagOwners = new Map<string, string>();\n\n\t\tfor (const ext of extensions) {\n\t\t\t// Check tools\n\t\t\tfor (const toolName of ext.tools.keys()) {\n\t\t\t\tconst existingOwner = toolOwners.get(toolName);\n\t\t\t\tif (existingOwner && existingOwner !== ext.path) {\n\t\t\t\t\t// Determine if the existing owner is a built-in (not a user extension)\n\t\t\t\t\tconst isBuiltIn = !existingOwner.includes(\"/.gsd/agent/extensions/\") &&\n\t\t\t\t\t\t!existingOwner.includes(\"/.gsd/extensions/\");\n\t\t\t\t\tconst hint = isBuiltIn\n\t\t\t\t\t\t? ` (built-in tool supersedes — consider removing ${ext.path})`\n\t\t\t\t\t\t: \"\";\n\t\t\t\t\tconflicts.push({\n\t\t\t\t\t\tpath: ext.path,\n\t\t\t\t\t\tmessage: `Tool \"${toolName}\" conflicts with ${existingOwner}${hint}`,\n\t\t\t\t\t});\n\t\t\t\t} else {\n\t\t\t\t\ttoolOwners.set(toolName, ext.path);\n\t\t\t\t}\n\t\t\t}\n\n\t\t\t// Check commands\n\t\t\tfor (const commandName of ext.commands.keys()) {\n\t\t\t\tconst existingOwner = commandOwners.get(commandName);\n\t\t\t\tif (existingOwner && existingOwner !== ext.path) {\n\t\t\t\t\tconst isBuiltIn = !existingOwner.includes(\"/.gsd/agent/extensions/\") &&\n\t\t\t\t\t\t!existingOwner.includes(\"/.gsd/extensions/\");\n\t\t\t\t\tconst hint = isBuiltIn\n\t\t\t\t\t\t? ` (built-in command supersedes — consider removing ${ext.path})`\n\t\t\t\t\t\t: \"\";\n\t\t\t\t\tconflicts.push({\n\t\t\t\t\t\tpath: ext.path,\n\t\t\t\t\t\tmessage: `Command \"/${commandName}\" conflicts with ${existingOwner}${hint}`,\n\t\t\t\t\t});\n\t\t\t\t} else {\n\t\t\t\t\tcommandOwners.set(commandName, ext.path);\n\t\t\t\t}\n\t\t\t}\n\n\t\t\t// Check flags\n\t\t\tfor (const flagName of ext.flags.keys()) {\n\t\t\t\tconst existingOwner = flagOwners.get(flagName);\n\t\t\t\tif (existingOwner && existingOwner !== ext.path) {\n\t\t\t\t\tconflicts.push({\n\t\t\t\t\t\tpath: ext.path,\n\t\t\t\t\t\tmessage: `Flag \"--${flagName}\" conflicts with ${existingOwner}`,\n\t\t\t\t\t});\n\t\t\t\t} else {\n\t\t\t\t\tflagOwners.set(flagName, ext.path);\n\t\t\t\t}\n\t\t\t}\n\t\t}\n\n\t\treturn conflicts;\n\t}\n}\n"]}

package/packages/pi-coding-agent/src/core/resource-loader.ts

@@ -803,9 +803,15 @@ export class DefaultResourceLoader implements ResourceLoader {
 			for (const toolName of ext.tools.keys()) {
 				const existingOwner = toolOwners.get(toolName);
 				if (existingOwner && existingOwner !== ext.path) {
+					// Determine if the existing owner is a built-in (not a user extension)
+					const isBuiltIn = !existingOwner.includes("/.gsd/agent/extensions/") &&
+						!existingOwner.includes("/.gsd/extensions/");
+					const hint = isBuiltIn
+						? ` (built-in tool supersedes — consider removing ${ext.path})`
+						: "";
 					conflicts.push({
 						path: ext.path,
-						message: `Tool "${toolName}" conflicts with ${existingOwner}`,
+						message: `Tool "${toolName}" conflicts with ${existingOwner}${hint}`,
 					});
 				} else {
 					toolOwners.set(toolName, ext.path);
@@ -816,9 +822,14 @@ export class DefaultResourceLoader implements ResourceLoader {
 			for (const commandName of ext.commands.keys()) {
 				const existingOwner = commandOwners.get(commandName);
 				if (existingOwner && existingOwner !== ext.path) {
+					const isBuiltIn = !existingOwner.includes("/.gsd/agent/extensions/") &&
+						!existingOwner.includes("/.gsd/extensions/");
+					const hint = isBuiltIn
+						? ` (built-in command supersedes — consider removing ${ext.path})`
+						: "";
 					conflicts.push({
 						path: ext.path,
-						message: `Command "/${commandName}" conflicts with ${existingOwner}`,
+						message: `Command "/${commandName}" conflicts with ${existingOwner}${hint}`,
 					});
 				} else {
 					commandOwners.set(commandName, ext.path);

package/src/resources/extensions/async-jobs/await-tool.ts

@@ -60,7 +60,6 @@ export function createAwaitTool(getManager: () => AsyncJobManager): ToolDefiniti
 			const running = watched.filter((j) => j.status === "running");
 			if (running.length === 0) {
 				const result = formatResults(watched);
-				manager.acknowledgeDeliveries(watched.map((j) => j.id));
 				return { content: [{ type: "text", text: result }], details: undefined };
 			}
 
@@ -69,7 +68,6 @@ export function createAwaitTool(getManager: () => AsyncJobManager): ToolDefiniti
 
 			// Collect all completed results (more may have finished while waiting)
 			const completed = watched.filter((j) => j.status !== "running");
-			manager.acknowledgeDeliveries(completed.map((j) => j.id));
 
 			const stillRunning = watched.filter((j) => j.status === "running");
 			let result = formatResults(completed);

package/src/resources/extensions/async-jobs/job-manager.ts

@@ -148,13 +148,6 @@ export class AsyncJobManager {
 		return [...this.jobs.values()];
 	}
 
-	/**
-	 * No-op. Retained for API compatibility with await_job tool.
-	 */
-	acknowledgeDeliveries(_jobIds: string[]): void {
-		// Delivery is fire-once; no retries to cancel.
-	}
-
 	/**
 	 * Cleanup all timers and resources.
 	 */

package/src/resources/extensions/bg-shell/output-formatter.ts

@@ -22,7 +22,6 @@ import {
 	READINESS_PATTERNS,
 	BUILD_COMPLETE_PATTERNS,
 	TEST_RESULT_PATTERNS,
-	LINE_DEDUP_MAX,
 } from "./types.js";
 import { addEvent, pushAlert } from "./process-manager.js";
 import { transitionToReady } from "./readiness-detector.js";
@@ -106,22 +105,6 @@ export function analyzeLine(bg: BgProcess, line: string, stream: "stdout" | "std
 		}
 	}
 
-	// Dedup tracking — evict oldest entry when map exceeds LINE_DEDUP_MAX (LRU via Map insertion order)
-	bg.totalRawLines++;
-	const lineHash = line.trim().slice(0, 100);
-	const existing = bg.lineDedup.get(lineHash);
-	if (existing !== undefined) {
-		// Re-insert to update insertion order (move to tail = most recent)
-		bg.lineDedup.delete(lineHash);
-		bg.lineDedup.set(lineHash, existing + 1);
-	} else {
-		if (bg.lineDedup.size >= LINE_DEDUP_MAX) {
-			// Evict oldest entry (Map iteration order = insertion order = LRU at head)
-			const oldest = bg.lineDedup.keys().next().value;
-			if (oldest !== undefined) bg.lineDedup.delete(oldest);
-		}
-		bg.lineDedup.set(lineHash, 1);
-	}
 }
 
 // ── Digest Generation ──────────────────────────────────────────────────────

package/src/resources/extensions/bg-shell/process-manager.ts

@@ -162,12 +162,8 @@ export function startProcess(opts: StartOptions): BgProcess {
 		group: opts.group || null,
 		lastErrorCount: 0,
 		lastWarningCount: 0,
-		commandHistory: [],
-		lineDedup: new Map(),
-		totalRawLines: 0,
 		stdoutLineCount: 0,
 		stderrLineCount: 0,
-		envKeys: Object.keys(opts.env || {}),
 		restartCount: 0,
 		startConfig: {
 			command,

package/src/resources/extensions/bg-shell/types.ts

@@ -21,9 +21,7 @@ export interface ProcessEvent {
 		| "recovered"
 		| "exited"
 		| "crashed"
-		| "output"
 		| "port_open"
-		| "pattern_match"
 		| "port_timeout";
 	timestamp: number;
 	detail: string;
@@ -92,18 +90,10 @@ export interface BgProcess {
 	lastErrorCount: number;
 	/** Last warning count snapshot for diff detection */
 	lastWarningCount: number;
-	/** Command history for shell-type sessions */
-	commandHistory: string[];
-	/** Dedup tracker: hash → count of repeated lines (capped at LINE_DEDUP_MAX entries) */
-	lineDedup: Map<string, number>;
-	/** Total raw lines (before dedup) for token savings calc */
-	totalRawLines: number;
 	/** Tracked stdout line count (incremented in addOutputLine, avoids O(n) filter) */
 	stdoutLineCount: number;
 	/** Tracked stderr line count (incremented in addOutputLine, avoids O(n) filter) */
 	stderrLineCount: number;
-	/** Env snapshot (keys only, no values for security) */
-	envKeys: string[];
 	/** Restart count */
 	restartCount: number;
 	/** Original start config for restart */
@@ -187,8 +177,6 @@ export interface ProcessManifest {
 export const MAX_BUFFER_LINES = 5000;
 export const MAX_EVENTS = 200;
 export const DEAD_PROCESS_TTL = 10 * 60 * 1000;
-/** Maximum unique entries in the per-process lineDedup Map before LRU eviction. */
-export const LINE_DEDUP_MAX = 500;
 export const PORT_PROBE_TIMEOUT = 500;
 export const READY_POLL_INTERVAL = 250;
 export const DEFAULT_READY_TIMEOUT = 30000;

package/src/resources/extensions/context7/index.ts

@@ -414,6 +414,13 @@ export default function (pi: ExtensionAPI) {
 		},
 	});
 
+	// ── Session cleanup ─────────────────────────────────────────────────────
+
+	pi.on("session_shutdown", async () => {
+		searchCache.clear();
+		docCache.clear();
+	});
+
 	// ── Startup notification ─────────────────────────────────────────────────
 
 	pi.on("session_start", async (_event, ctx) => {

package/src/resources/extensions/get-secrets-from-user.ts

@@ -11,9 +11,9 @@ import { existsSync, statSync } from "node:fs";
 import { resolve } from "node:path";
 
 import type { ExtensionAPI, Theme } from "@gsd/pi-coding-agent";
-import { CURSOR_MARKER, Editor, type EditorTheme, Key, matchesKey, Text, truncateToWidth, wrapTextWithAnsi } from "@gsd/pi-tui";
+import { Editor, type EditorTheme, Key, matchesKey, Text, truncateToWidth, wrapTextWithAnsi } from "@gsd/pi-tui";
 import { Type } from "@sinclair/typebox";
-import { makeUI, type ProgressStatus } from "./shared/mod.js";
+import { makeUI, maskEditorLine, type ProgressStatus } from "./shared/mod.js";
 import { parseSecretsManifest, formatSecretsManifest } from "./gsd/files.js";
 import { resolveMilestoneFile } from "./gsd/paths.js";
 import type { SecretsManifestEntry } from "./gsd/types.js";
@@ -42,39 +42,6 @@ function maskPreview(value: string): string {
 	return `${value.slice(0, 4)}${"*".repeat(Math.max(4, value.length - 8))}${value.slice(-4)}`;
 }
 
-/**
- * Replace editor visible text with masked characters while preserving ANSI cursor/sequencer codes.
- */
-function maskEditorLine(line: string): string {
-	// Keep border / metadata lines readable.
-	if (line.startsWith("─")) {
-		return line;
-	}
-
-	let output = "";
-	let i = 0;
-	while (i < line.length) {
-		if (line.startsWith(CURSOR_MARKER, i)) {
-			output += CURSOR_MARKER;
-			i += CURSOR_MARKER.length;
-			continue;
-		}
-
-		const ansiMatch = /^\x1b\[[0-9;]*m/.exec(line.slice(i));
-		if (ansiMatch) {
-			output += ansiMatch[0];
-			i += ansiMatch[0].length;
-			continue;
-		}
-
-		const ch = line[i] as string;
-		output += ch === " " ? " " : "*";
-		i += 1;
-	}
-
-	return output;
-}
-
 function shellEscapeSingle(value: string): string {
 	return `'${value.replace(/'/g, `'\\''`)}'`;
 }

package/src/resources/extensions/google-search/index.ts

@@ -411,6 +411,13 @@ export default function (pi: ExtensionAPI) {
 		},
 	});
 
+	// ── Session cleanup ─────────────────────────────────────────────────────
+
+	pi.on("session_shutdown", async () => {
+		resultCache.clear();
+		client = null;
+	});
+
 	// ── Startup notification ─────────────────────────────────────────────────
 
 	pi.on("session_start", async (_event, ctx) => {

package/src/resources/extensions/gsd/auto-dispatch.ts

@@ -12,14 +12,16 @@
 import type { GSDState } from "./types.js";
 import type { GSDPreferences } from "./preferences.js";
 import type { UatType } from "./files.js";
-import { loadFile, extractUatType, loadActiveOverrides } from "./files.js";
+import { loadFile, extractUatType, loadActiveOverrides, parseRoadmap } from "./files.js";
 import {
   resolveMilestoneFile,
   resolveMilestonePath,
   resolveSliceFile,
+  resolveSlicePath,
   resolveTaskFile,
   relSliceFile,
   buildMilestoneFileName,
+  buildSliceFileName,
 } from "./paths.js";
 import { existsSync, mkdirSync, writeFileSync } from "node:fs";
 import { join } from "node:path";
@@ -369,6 +371,30 @@ const DISPATCH_RULES: DispatchRule[] = [
     name: "validating-milestone → validate-milestone",
     match: async ({ state, mid, midTitle, basePath, prefs }) => {
       if (state.phase !== "validating-milestone") return null;
+
+      // Safety guard (#1368): verify all roadmap slices have SUMMARY files before
+      // allowing milestone validation. If any slice lacks a summary, the milestone
+      // is not genuinely complete — something skipped earlier slices.
+      const roadmapFile = resolveMilestoneFile(basePath, mid, "ROADMAP");
+      const roadmapContent = roadmapFile ? await loadFile(roadmapFile) : null;
+      if (roadmapContent) {
+        const roadmap = parseRoadmap(roadmapContent);
+        const missingSlices: string[] = [];
+        for (const slice of roadmap.slices) {
+          const summaryPath = resolveSliceFile(basePath, mid, slice.id, "SUMMARY");
+          if (!summaryPath || !existsSync(summaryPath)) {
+            missingSlices.push(slice.id);
+          }
+        }
+        if (missingSlices.length > 0) {
+          return {
+            action: "stop",
+            reason: `Cannot validate milestone ${mid}: slices ${missingSlices.join(", ")} are missing SUMMARY files. These slices may have been skipped.`,
+            level: "error",
+          };
+        }
+      }
+
       // Skip preference: write a minimal pass-through VALIDATION file
       if (prefs?.phases?.skip_milestone_validation) {
         const mDir = resolveMilestonePath(basePath, mid);
@@ -404,6 +430,28 @@ const DISPATCH_RULES: DispatchRule[] = [
     name: "completing-milestone → complete-milestone",
     match: async ({ state, mid, midTitle, basePath }) => {
       if (state.phase !== "completing-milestone") return null;
+
+      // Safety guard (#1368): verify all roadmap slices have SUMMARY files.
+      const roadmapFile = resolveMilestoneFile(basePath, mid, "ROADMAP");
+      const roadmapContent = roadmapFile ? await loadFile(roadmapFile) : null;
+      if (roadmapContent) {
+        const roadmap = parseRoadmap(roadmapContent);
+        const missingSlices: string[] = [];
+        for (const slice of roadmap.slices) {
+          const summaryPath = resolveSliceFile(basePath, mid, slice.id, "SUMMARY");
+          if (!summaryPath || !existsSync(summaryPath)) {
+            missingSlices.push(slice.id);
+          }
+        }
+        if (missingSlices.length > 0) {
+          return {
+            action: "stop",
+            reason: `Cannot complete milestone ${mid}: slices ${missingSlices.join(", ")} are missing SUMMARY files. Run /gsd doctor to diagnose.`,
+            level: "error",
+          };
+        }
+      }
+
       return {
         action: "dispatch",
         unitType: "complete-milestone",

package/src/resources/extensions/gsd/auto-loop.ts

@@ -221,6 +221,15 @@ export async function runUnit(
     s.pendingResolve = resolve;
   });
 
+  // Ensure cwd matches basePath before dispatch (#1389).
+  // async_bash and background jobs can drift cwd away from the worktree.
+  // Realigning here prevents commits from landing on the wrong branch.
+  try {
+    if (process.cwd() !== s.basePath) {
+      process.chdir(s.basePath);
+    }
+  } catch { /* non-fatal — chdir may fail if dir was removed */ }
+
   // ── Send the prompt ──
   debugLog("runUnit", { phase: "send-message", unitType, unitId });
 
@@ -344,6 +353,7 @@ export interface LoopDeps {
   getManifestStatus: (
     basePath: string,
     mid: string | undefined,
+    projectRoot?: string,
   ) => Promise<{ pending: unknown[] } | null>;
   collectSecretsFromManifest: (
     basePath: string,
@@ -983,7 +993,7 @@ export async function autoLoop(
 
       // Secrets re-check gate
       try {
-        const manifestStatus = await deps.getManifestStatus(s.basePath, mid);
+        const manifestStatus = await deps.getManifestStatus(s.basePath, mid, s.originalBasePath);
         if (manifestStatus && manifestStatus.pending.length > 0) {
           const result = await deps.collectSecretsFromManifest(
             s.basePath,