greprag 0.6.1 → 0.7.0

package/dist/commands/doctor.d.ts

@@ -0,0 +1,15 @@
+/** greprag doctor — diagnose and repair a project's memory identity.
+ *
+ * Finds orphan project_ids that belong to the same logical project, detects
+ * drift between file-based and git-derived UUIDs, and offers the user one of
+ * three repair actions (consolidate, migrate-to-git, dry-run) via the
+ * tenant-scoped /v1/projects/merge endpoint.
+ *
+ * No raw DB access — everything flows through the public API so a user can
+ * repair their own state with just an API key. */
+interface DoctorOptions {
+    yes?: boolean;
+    inspect?: boolean;
+}
+export declare function runDoctor(opts: DoctorOptions): Promise<void>;
+export {};

package/dist/commands/doctor.js

@@ -0,0 +1,297 @@
+"use strict";
+/** greprag doctor — diagnose and repair a project's memory identity.
+ *
+ * Finds orphan project_ids that belong to the same logical project, detects
+ * drift between file-based and git-derived UUIDs, and offers the user one of
+ * three repair actions (consolidate, migrate-to-git, dry-run) via the
+ * tenant-scoped /v1/projects/merge endpoint.
+ *
+ * No raw DB access — everything flows through the public API so a user can
+ * repair their own state with just an API key. */
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.runDoctor = runDoctor;
+const fs = __importStar(require("fs"));
+const path = __importStar(require("path"));
+const readline = __importStar(require("readline"));
+const project_anchor_1 = require("../project-anchor");
+const API_URL_DEFAULT = 'https://api.greprag.com';
+async function runDoctor(opts) {
+    const cfg = getConfig();
+    if (!cfg.apiKey) {
+        console.error('Not configured. Run: greprag init');
+        process.exit(1);
+    }
+    const cwd = process.cwd();
+    const anchor = (0, project_anchor_1.readAnchor)(cwd);
+    const gitId = (0, project_anchor_1.computeGitDerivedProjectId)(cwd);
+    // --- Diagnosis ---------------------------------------------------------
+    console.log('\n[greprag doctor]\n');
+    console.log(`Project:        ${anchor.projectName}`);
+    console.log(`Current ID:     ${anchor.projectId}`);
+    console.log(`Identity source: ${describeSource(anchor.source, anchor.anchorPath)}`);
+    if (gitId) {
+        if (gitId === anchor.projectId) {
+            console.log(`Git-derived ID: ${gitId}  (matches current)`);
+        }
+        else {
+            console.log(`Git-derived ID: ${gitId}  (DIFFERS from current — drift)`);
+        }
+    }
+    else {
+        console.log(`Git-derived ID: (none — no git repo or no commits yet)`);
+    }
+    // Query orphans for this profile name.
+    const orphansUrl = `${cfg.apiUrl}/v1/projects/orphans?profile=${encodeURIComponent(anchor.projectName)}`;
+    const orphansResp = await apiGet(orphansUrl, cfg.apiKey);
+    // Filter out the current project_id — that's the active bucket, not an orphan.
+    const orphans = orphansResp.candidates.filter(c => c.project_id !== anchor.projectId);
+    console.log('');
+    if (orphans.length === 0 && gitId === anchor.projectId) {
+        console.log('All clean. No orphans, no drift. Nothing to repair.\n');
+        return;
+    }
+    if (orphans.length > 0) {
+        console.log(`Orphan project IDs under profile "${anchor.projectName}":`);
+        orphans.forEach((o, i) => {
+            const types = Object.entries(o.by_type).map(([k, v]) => `${v} ${k}`).join(', ');
+            const range = o.oldest && o.newest
+                ? `${o.oldest.slice(0, 10)} → ${o.newest.slice(0, 10)}`
+                : '(no memory rows)';
+            console.log(`  [${i + 1}] ${o.project_id}  ${o.total} rows  (${types || 'registry only'})`);
+            console.log(`      range: ${range}${o.registered ? '  · registered' : ''}`);
+        });
+        console.log('');
+    }
+    else {
+        console.log('No orphan project IDs found under this profile.');
+        console.log('');
+    }
+    if (opts.inspect) {
+        console.log('Inspect-only mode — no changes made.\n');
+        return;
+    }
+    // --- Repair options ---------------------------------------------------
+    const driftPresent = gitId !== null && gitId !== anchor.projectId;
+    const haveOrphans = orphans.length > 0;
+    const orphanIds = orphans.map(o => o.project_id);
+    const actions = [];
+    if (driftPresent && gitId) {
+        // Migrate to git-derived UUID: everything → git UUID, strip file's project_id.
+        const migrationSources = [anchor.projectId, ...orphanIds];
+        actions.push({
+            key: 'm',
+            label: `Migrate to git-derived UUID (${gitId})\n       — moves current + orphans onto the git UUID\n       — strips project_id from .claude/project.json (settings stay)`,
+            target: gitId,
+            sources: migrationSources,
+            stripFileProjectId: true,
+            recommended: true,
+        });
+    }
+    if (haveOrphans) {
+        // Consolidate orphans into the current UUID.
+        actions.push({
+            key: 'c',
+            label: `Consolidate orphans into current UUID (${anchor.projectId})\n       — moves orphans onto the current UUID\n       — keeps the current identity source unchanged`,
+            target: anchor.projectId,
+            sources: orphanIds,
+            stripFileProjectId: false,
+            recommended: !driftPresent,
+        });
+    }
+    if (actions.length === 0) {
+        console.log('Nothing to repair. (Drift detection saw current = git UUID, no orphans.)\n');
+        return;
+    }
+    // Always offer dry-run and no-op for the most-recommended action.
+    console.log('Actions:');
+    for (const a of actions) {
+        const tag = a.recommended ? '  (recommended)' : '';
+        console.log(`  [${a.key}] ${a.label}${tag}`);
+    }
+    console.log(`  [d] Dry-run the recommended action above (no writes)`);
+    console.log(`  [n] No action (exit)\n`);
+    let choice;
+    if (opts.yes) {
+        const rec = actions.find(a => a.recommended) || actions[0];
+        choice = rec.key;
+        console.log(`--yes given; picking recommended action: [${rec.key}]\n`);
+    }
+    else {
+        choice = (await prompt('Choice: ')).trim().toLowerCase();
+    }
+    let dryRun = false;
+    let picked = null;
+    if (choice === 'd') {
+        picked = actions.find(a => a.recommended) || actions[0];
+        dryRun = true;
+    }
+    else {
+        picked = actions.find(a => a.key === choice) || null;
+    }
+    if (!picked) {
+        console.log('No action selected.\n');
+        return;
+    }
+    // --- Execute ----------------------------------------------------------
+    console.log(`\n${dryRun ? 'Dry-running' : 'Executing'}: merge into ${picked.target}`);
+    console.log(`Sources (${picked.sources.length}):`);
+    picked.sources.forEach(s => console.log(`  - ${s}`));
+    if (!dryRun && !opts.yes) {
+        const confirm = (await prompt('\nProceed? (yes/no): ')).trim().toLowerCase();
+        if (confirm !== 'yes' && confirm !== 'y') {
+            console.log('Cancelled.\n');
+            return;
+        }
+    }
+    const report = await apiPost(`${cfg.apiUrl}/v1/projects/merge`, cfg.apiKey, {
+        target_project_id: picked.target,
+        source_project_ids: picked.sources,
+        target_project_name: anchor.projectName,
+        dry_run: dryRun,
+    });
+    if (!report.ok) {
+        console.error(`\nMerge failed: ${report.error}\n`);
+        process.exit(1);
+    }
+    console.log(`\n${dryRun ? 'Would change' : 'Changed'}:`);
+    console.log(`  memories:                ${report.changes.memories}`);
+    console.log(`  memory_claims:           ${report.changes.memory_claims}`);
+    console.log(`  inbox_messages (to):     ${report.changes.inbox_messages_to}`);
+    console.log(`  inbox_messages (from):   ${report.changes.inbox_messages_from}`);
+    console.log(`  projects registry rows:  ${report.changes.projects_registry_deleted} deleted`);
+    if (!dryRun && picked.stripFileProjectId) {
+        const stripped = stripFileProjectId(anchor.anchorPath);
+        if (stripped) {
+            console.log(`\nStripped project_id from ${anchor.anchorPath}`);
+            console.log('Identity now flows through git-derived UUID — file holds settings only.');
+        }
+    }
+    console.log(`\n${dryRun ? 'Dry-run complete. No changes were written.' : 'Repair complete.'}\n`);
+}
+// -- Helpers ----------------------------------------------------------------
+function describeSource(source, anchorPath) {
+    switch (source) {
+        case 'file': return `.claude/project.json (explicit project_id)`;
+        case 'git': return `git root commit SHA (derived, no file needed)`;
+        case 'global': return `~/.claude/project.json (global anchor — Cowork-style)`;
+        case 'hash': return `path hash (no git, no anchor file — UNSTABLE)`;
+        default: return source;
+    }
+}
+/** Rewrite the anchor file to drop `project_id` and `project_name`, keeping
+ *  per-project settings. Returns true on write, false if the file is absent or
+ *  already settings-only. */
+function stripFileProjectId(anchorPath) {
+    if (!fs.existsSync(anchorPath))
+        return false;
+    let raw;
+    try {
+        raw = JSON.parse(fs.readFileSync(anchorPath, 'utf-8'));
+    }
+    catch {
+        return false;
+    }
+    if (!('project_id' in raw))
+        return false;
+    delete raw.project_id;
+    fs.writeFileSync(anchorPath, JSON.stringify(raw, null, 2) + '\n');
+    return true;
+}
+function prompt(question) {
+    const rl = readline.createInterface({ input: process.stdin, output: process.stdout });
+    return new Promise(resolve => {
+        rl.question(question, answer => {
+            rl.close();
+            resolve(answer);
+        });
+    });
+}
+// -- HTTP / env -------------------------------------------------------------
+function loadEnvFile(filePath) {
+    try {
+        const content = fs.readFileSync(filePath, 'utf-8');
+        for (const line of content.split('\n')) {
+            const trimmed = line.trim();
+            if (!trimmed || trimmed.startsWith('#'))
+                continue;
+            const eqIdx = trimmed.indexOf('=');
+            if (eqIdx < 1)
+                continue;
+            const key = trimmed.slice(0, eqIdx).trim();
+            let value = trimmed.slice(eqIdx + 1).trim();
+            if ((value.startsWith('"') && value.endsWith('"')) ||
+                (value.startsWith("'") && value.endsWith("'"))) {
+                value = value.slice(1, -1);
+            }
+            if (!process.env[key])
+                process.env[key] = value;
+        }
+    }
+    catch { /* missing — fine */ }
+}
+function ensureEnv() {
+    const homeDir = process.env.HOME || process.env.USERPROFILE || '';
+    if (homeDir)
+        loadEnvFile(path.join(homeDir, '.env'));
+    if (!process.env.GREPRAG_API_KEY)
+        loadEnvFile(path.join(process.cwd(), '.env'));
+}
+function getConfig() {
+    ensureEnv();
+    return {
+        apiUrl: process.env.GREPRAG_API_URL || API_URL_DEFAULT,
+        apiKey: process.env.GREPRAG_API_KEY || '',
+    };
+}
+async function apiGet(url, apiKey) {
+    const res = await fetch(url, { headers: { 'Authorization': `Bearer ${apiKey}` } });
+    if (!res.ok)
+        throw new Error(`API ${res.status}: ${await res.text()}`);
+    return res.json();
+}
+async function apiPost(url, apiKey, body) {
+    const res = await fetch(url, {
+        method: 'POST',
+        headers: { 'Authorization': `Bearer ${apiKey}`, 'Content-Type': 'application/json' },
+        body: JSON.stringify(body),
+    });
+    if (!res.ok) {
+        // Pass through error JSON for the caller to surface.
+        return await res.json();
+    }
+    return res.json();
+}
+//# sourceMappingURL=doctor.js.map

package/dist/commands/doctor.js.map

@@ -0,0 +1 @@
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package/dist/commands/init.js

@@ -43,6 +43,7 @@ const fs = __importStar(require("fs"));
 const path = __importStar(require("path"));
 const os = __importStar(require("os"));
 const readline = __importStar(require("readline"));
+const child_process_1 = require("child_process");
 const project_anchor_1 = require("../project-anchor");
 const API_URL = 'https://api.greprag.com';
 async function runInit(opts) {
@@ -86,10 +87,23 @@ async function runInit(opts) {
     const settings = readSettings(settingsPath);
     const changes = applySettings(settings, apiKey);
     writeSettings(settingsPath, settings);
-    // Step 4: Project anchor — UUID-per-repo, committed to .claude/project.json.
-    // Stable across renames, remote URL changes, fresh clones, forks.
+    // Step 4: Project anchor. Behavior depends on cascade source:
+    //   - source='git'  → settings-only file written; identity is git-derived.
+    //                     No gitignore patch needed (file isn't load-bearing).
+    //   - source='file' → file holds a random project_id (non-git directories).
+    //                     Patch the gitignore so the file survives fresh clones.
+    //   - source='global' / unchanged → idempotent return, no action.
     const anchor = (0, project_anchor_1.ensureAnchor)(process.cwd());
-    changes.push(`Project anchor: ${anchor.projectName} (${anchor.projectId.slice(0, 8)})`);
+    if (anchor.source === 'git') {
+        changes.push(`Project anchor: ${anchor.projectName} (${anchor.projectId.slice(0, 8)}) — derived from git history`);
+    }
+    else {
+        changes.push(`Project anchor: ${anchor.projectName} (${anchor.projectId.slice(0, 8)}) — stored in .claude/project.json`);
+        // Only patch gitignore when the file is load-bearing for identity.
+        const gitignoreResult = ensureAnchorTrackable(process.cwd());
+        if (gitignoreResult)
+            changes.push(gitignoreResult);
+    }
     // Step 5: Global anchor — catches Cowork + any session without a repo anchor.
     const globalAnchor = (0, project_anchor_1.ensureGlobalAnchor)();
     changes.push(`Global anchor: ${globalAnchor.projectName} (${globalAnchor.projectId.slice(0, 8)})`);
@@ -275,6 +289,74 @@ function patchGlobalClaudeMd() {
     fs.writeFileSync(claudeMdPath, src.trimEnd() + '\n\n' + INBOX_SECTION_NEW + '\n', 'utf-8');
     return true;
 }
+// -- Anchor trackability ----------------------------------------------------
+/** When a repo gitignores `.claude/`, the anchor file we just wrote won't
+ *  survive a fresh clone or worktree switch — the deterministic-hash fallback
+ *  will silently take over, splitting the project_id and breaking inbox
+ *  addressing. Detect that case at init time and patch the gitignore so the
+ *  anchor is durably tracked.
+ *
+ *  Common patterns we handle: `.claude/`, `.claude`, `/.claude/`, `/.claude`.
+ *  Each is rewritten to its `*`-contents form so a `!.claude/project.json`
+ *  re-include works (git won't descend into an excluded directory, so the
+ *  trailing-slash directory pattern must become a contents-only pattern).
+ *
+ *  Returns a one-line summary of what was done, or null if no action needed
+ *  (not a git repo, file already tracked, or pattern unrecognized — in which
+ *  case we print a manual-fix hint instead). */
+function ensureAnchorTrackable(projectRoot) {
+    // Not in a git repo? Nothing to do — the anchor is local-only by definition.
+    try {
+        (0, child_process_1.execSync)('git rev-parse --git-dir', { cwd: projectRoot, stdio: 'pipe' });
+    }
+    catch {
+        return null;
+    }
+    // Is the anchor file ignored? `git check-ignore` exits 0 when ignored,
+    // 1 when not ignored. Either non-zero exit means "no work to do."
+    let checkOutput;
+    try {
+        checkOutput = (0, child_process_1.execSync)('git check-ignore -v .claude/project.json', {
+            cwd: projectRoot,
+            encoding: 'utf-8',
+            stdio: ['pipe', 'pipe', 'pipe'],
+        });
+    }
+    catch {
+        return null; // not ignored — anchor is already trackable
+    }
+    // Output: `<gitignore-relative-path>:<line>:<pattern>\t<file-path>`
+    const m = checkOutput.match(/^(.+?):(\d+):(.+?)\t/);
+    if (!m)
+        return null;
+    const [, gitignoreRel, lineNumStr, pattern] = m;
+    const gitignorePath = path.isAbsolute(gitignoreRel)
+        ? gitignoreRel
+        : path.join(projectRoot, gitignoreRel);
+    const lineNum = parseInt(lineNumStr, 10);
+    const content = fs.readFileSync(gitignorePath, 'utf-8');
+    const lines = content.split('\n');
+    if (lineNum < 1 || lineNum > lines.length)
+        return null;
+    const trimmed = pattern.trim();
+    const dirPatterns = new Set([
+        '.claude/', '.claude', '/.claude/', '/.claude',
+    ]);
+    if (dirPatterns.has(trimmed)) {
+        // Preserve leading slash if present in the original pattern.
+        const anchored = trimmed.startsWith('/');
+        const prefix = anchored ? '/' : '';
+        // Replace the single directory-ignore line with the contents-ignore form
+        // plus the re-include for project.json. Git evaluates patterns in order
+        // and re-includes override later, so the order matters: `*` first, then `!`.
+        lines.splice(lineNum - 1, 1, `${prefix}.claude/*`, `!${prefix}.claude/project.json`);
+        fs.writeFileSync(gitignorePath, lines.join('\n'));
+        return `Patched ${gitignoreRel}: \`${trimmed}\` → \`${prefix}.claude/*\` + \`!${prefix}.claude/project.json\` (anchor now trackable)`;
+    }
+    // Unrecognized pattern — don't risk breaking the user's other intent. Tell
+    // them what to do manually.
+    return `WARNING: .claude/project.json is ignored by \`${pattern}\` in ${gitignoreRel}. The anchor won't survive a fresh clone. Add \`!.claude/project.json\` after that line manually, or run \`git add -f .claude/project.json\` to force-track it once.`;
+}
 // -- Input ------------------------------------------------------------------
 function prompt(question) {
     const rl = readline.createInterface({

package/dist/commands/init.js.map

@@ -1 +1 @@
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package/dist/hook.js

@@ -802,6 +802,36 @@ async function recap(input) {
     const anchor = (0, project_anchor_1.readAnchor)(cwd);
     if (!anchor.projectId)
         return;
+    // Setup warning — surfaced at session start when the project's identity is
+    // either unstable (path-hash fallback) OR drifting (file UUID differs from
+    // what git would derive, indicating an old random UUID minted before git
+    // was in play). Both cases point the user at the doctor command.
+    let setupWarning = null;
+    if (anchor.source === 'hash') {
+        // No git, no anchor file, no global anchor. The path-hash UUID is stable
+        // for this directory but will diverge if the directory ever moves.
+        setupWarning =
+            `[GrepRAG memory: this project ("${anchor.projectName}") has no stable identity — `
+                + `conversation turns are being captured under an ID derived from the directory path, `
+                + `which can drift if the directory moves or is cloned elsewhere. `
+                + `For permanent stability, run \`git init && git commit\` in the project root `
+                + `(memory then derives its ID from your git history automatically). `
+                + `If you notice memory missing later, run \`greprag doctor\` to find and merge orphan IDs.]`;
+    }
+    else if (anchor.source === 'file') {
+        // File-based identity (legacy). Check whether git would derive a different
+        // UUID — if so, the file holds a stale random UUID from before git setup.
+        const gitId = (0, project_anchor_1.computeGitDerivedProjectId)(cwd);
+        if (gitId && gitId !== anchor.projectId) {
+            setupWarning =
+                `[GrepRAG memory: identity drift detected for "${anchor.projectName}" — `
+                    + `your project's stored ID (${anchor.projectId.slice(0, 8)}) differs from the ID `
+                    + `that would be derived from your git history (${gitId.slice(0, 8)}). `
+                    + `This usually means the stored ID was created before git was set up; `
+                    + `older sessions may have written history under a different UUID. `
+                    + `Run \`greprag doctor\` to inspect and merge.]`;
+        }
+    }
     // Inbox unread count — fires regardless of recap policy (session start is
     // the right moment to surface mail, even if the user opted out of memory
     // recap for this project). Respects inbox_notify=off only.
@@ -812,12 +842,21 @@ async function recap(input) {
             unreadHeader = `[${count} unread in inbox — /greprag to read & send]`;
         }
     }
+    const preamble = () => {
+        const lines = [];
+        if (setupWarning)
+            lines.push(setupWarning);
+        if (unreadHeader)
+            lines.push(unreadHeader);
+        return lines.length ? lines.join('\n') + '\n' : '';
+    };
     // Per-project opt-out — agent flips session_start_recap=false to suppress
     // the episodic injection for a specific project without disabling the
-    // hook globally. Inbox header still fires above when applicable.
+    // hook globally. Setup warning + inbox header still fire above.
     if (!anchor.sessionStartRecap) {
-        if (unreadHeader)
-            process.stdout.write(unreadHeader + '\n');
+        const out = preamble();
+        if (out)
+            process.stdout.write(out);
         return;
     }
     const now = new Date();
@@ -864,14 +903,19 @@ async function recap(input) {
     const recentHourlies = allHourlies
         .filter(h => h.windowEnd && new Date(h.windowEnd).getTime() >= hourlyCutoffMs)
         .slice(-HOURLY_CAP);
-    // Silent no-op when there's truly nothing to say — unless an inbox header
-    // is pending, in which case we still surface that.
+    // Silent no-op when there's truly nothing to say — unless a setup warning
+    // or inbox header is pending, in which case we still surface those.
     if (dailies.length === 0 && recentHourlies.length === 0) {
-        if (unreadHeader)
-            process.stdout.write(unreadHeader + '\n');
+        const out = preamble();
+        if (out)
+            process.stdout.write(out);
         return;
     }
     const parts = [];
+    if (setupWarning) {
+        parts.push(setupWarning);
+        parts.push('');
+    }
     if (unreadHeader) {
         parts.push(unreadHeader);
         parts.push('');