graphdb-workbench 2.8.0-TR7 → 2.8.0-TR9

package/dist/50.6ec1bafbdd1414e0002d.bundle.js

@@ -0,0 +1 @@
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I'll submit a set of publication abstracts discussing given disease and your task is to find in the abstracts any potential new biomarkers which are not yet listed in the appropriate databases. Each abstract is preceded by identifier - its PubMed id called for short PMID. \n\nReturn the set of biomarkers listed one per row, each marker followed by the | and PMID of the respective abstract if was mentioned in.\n\nExample: \nInput: 36418457\t[Amyotrophic lateral sclerosis (ALS) is a genetically and phenotypically heterogeneous disease results in the loss of motor neurons. Mounting information points to involvement of other systems including cognitive impairment. However, neither the valid biomarker for diagnosis nor effective therapeutic intervention is available for ALS. The present study is aimed at identifying potentially genetic biomarker that improves the diagnosis and treatment of ALS patients based on the data of the Gene Expression Omnibus. 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this._method}set method(e){this._method=e}get sparqlQuery(){return this._sparqlQuery}set sparqlQuery(e){this._sparqlQuery=e}get ontologyGraph(){return this._ontologyGraph}set ontologyGraph(e){this._ontologyGraph=e}get maxNumberOfTriplesPerCall(){return this._maxNumberOfTriplesPerCall}set maxNumberOfTriplesPerCall(e){this._maxNumberOfTriplesPerCall=e}get similarityIndex(){return this._similarityIndex}set similarityIndex(e){this._similarityIndex=e}get similarityIndexThreshold(){return this._similarityIndexThreshold}set similarityIndexThreshold(e){this._similarityIndexThreshold=e}get queryTemplate(){return this._queryTemplate}set queryTemplate(e){this._queryTemplate=e}get retrievalConnectorInstance(){return this._retrievalConnectorInstance}set retrievalConnectorInstance(e){this._retrievalConnectorInstance=e}}class d{constructor(e){this._additionalExtractionMethods=e}get additionalExtractionMethods(){return this._additionalExtractionMethods}set additionalExtractionMethods(e){this._additionalExtractionMethods=e}}class l{constructor(e){this._method=e.method}get method(){return this._method}set method(e){this._method=e}}class c{constructor(e=[]){this._agents=e,this._filterableAgents=Object(n.cloneDeep)(e)}isEmpty(){return 0===this._agents.length}filterByRepository(e){this._filterableAgents=this._agents.filter(t=>e===r.AGENTS_FILTER_ALL_KEY||(t.repositoryId===e?t:void 0))}getAgent(e){return this._agents.find(t=>t.id===e)}get agents(){return this._agents}set agents(e){this._agents=e}get filterableAgents(){return this._filterableAgents}set filterableAgents(e){this._filterableAgents=e}}const h={FTS_SEARCH:"fts_search",SPARQL:"sparql_search",SIMILARITY:"similarity_search",RETRIEVAL:"retrieval_search"},u={IRI_DISCOVERY_SEARCH:"iri_discovery_search"};class m{constructor(e,t,s=!1){this._key=e,this._label=t,this._selected=s}get key(){return this._key}set key(e){this._key=e}get label(){return this._label}set label(e){this._label=e}get 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package/dist/{50.7b343a210ee52430eaf5.bundle.js → 51.bfd314f2bba3c733d2e7.bundle.js}

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a})),s.d(t,"ImportResourceTreeService",(function(){return u}));var r=s(90),i=s(129),o=s(73);const c=30,n=new Map;n.set(r.ImportResourceType.DIRECTORY,"icon-folder"),n.set(r.ImportResourceType.FILE,"icon-file");const a=new Map;a.set(r.ImportResourceType.DIRECTORY,"icon-folder"),a.set(r.ImportResourceType.FILE,"icon-upload"),a.set(r.ImportResourceType.URL,"icon-link"),a.set(r.ImportResourceType.TEXT,"icon-sparql");class u{static toImportResourceTree(e,t){const s=new i.ImportResourceTreeElement;return e.forEach(e=>{u.addResourceToTree(s,e,t)}),s}static mergeResourceTree(e,t,s){e.getRoot().toList().forEach(e=>{t.find(t=>t.name===e.importResource.name)||e.remove()}),t.forEach(t=>{const r=e.getResourceByName(t.name);r?r.importResource=t:u.addResourceToTree(e,t,s)})}static addResourceToTree(e,t,s){const r=u.getPath(t);let o;o=t.isDirectory()?r:r.slice(0,r.length-1);const c=u.getOrCreateParent(e,o);if(t.isFile()){const e=new i.ImportResourceTreeElement;return e.parent=c,e.importResource=t,e.path=r.join("/"),e.name=r[r.length-1],c.addResource(e),u.setIcon(e,s),e}return c.importResource=t,c.path=r.join("/"),u.setIcon(c,s),c}static setIcon(e,t){e.iconClass=t?a.get(e.importResource.type):n.get(e.importResource.type)}static getOrCreateParent(e,t){let s=e;return t.forEach(e=>{const t=s.getOrCreateDirectory(e);t.parent=s,s=t}),s}static getPath(e){if(e.isURL())return[e.name];const t=/[/\\]/;return t.test(e.name)?e.name.split(t):[e.name]}static calculateElementIndent(e){e.indent=8+u.getParentsCount(e)*c+"px",e.directories.forEach(e=>u.calculateElementIndent(e)),e.files.forEach(e=>u.calculateElementIndent(e))}static setupAfterTreeInitProperties(e){e.isRoot()||(e.isImportable=u.isImportable(e.importResource),e.hasOngoingImport=u.hasOngoingImport(e.importResource),e.canResetStatus=u.canResetStatus(e.importResource),e.hasStatusInfo="DONE"===e.importResource.status||"ERROR"===e.importResource.status,e.isEditable=e.importResource.isText(),u.setupShortenedMessage(e),u.setupShortenedContext(e),u.setupShortenedName(e),u.setupImportedAndModifiedComparableProperties(e)),e.directories.forEach(e=>u.setupAfterTreeInitProperties(e)),e.files.forEach(e=>u.setupAfterTreeInitProperties(e))}static setupShortenedMessage(e){const t=e.importResource?e.importResource.message:"";t&&t.length>150&&(e.shortenedMessage=t.substring(0,150)+"...")}static setupShortenedContext(e){const t=e.importResource?e.importResource.context:"";t.length>63&&(e.shortenedContext=t.substring(0,30)+"..."+t.substring(t.length-30))}static setupShortenedName(e){const t=e.name||"";t.length>123&&(e.shortenedName=t.substring(0,30)+"..."+t.substring(t.length-30))}static setupImportedAndModifiedComparableProperties(e){const t=e.importResource;if(t){if(0===t.importedOn||0===t.modifiedOn||t.importedOn===t.modifiedOn)return;e.isImportedBiggerThanModified=t.importedOn>t.modifiedOn,e.isModifiedBiggerThanImported=!e.isImportedBiggerThanModified}}static isImportable(e){return e.status!==o.ImportResourceStatus.IMPORTING&&e.status!==o.ImportResourceStatus.UPLOADING&&e.status!==o.ImportResourceStatus.PENDING&&e.status!==o.ImportResourceStatus.INTERRUPTING&&e.status!==o.ImportResourceStatus.UPLOADING&&e.status!==o.ImportResourceStatus.UPLOADED&&e.status!==o.ImportResourceStatus.UPLOAD_ERROR}static hasOngoingImport(e){return e.status===o.ImportResourceStatus.IMPORTING||e.status===o.ImportResourceStatus.UPLOADING||e.status===o.ImportResourceStatus.PENDING||e.status===o.ImportResourceStatus.INTERRUPTING}static canResetStatus(e){return e.status===o.ImportResourceStatus.DONE||e.status===o.ImportResourceStatus.ERROR}static getParentsCount(e){let t=0;if(void 0===e.parent)return t;let s=e.parent;for(;s;)s=s.parent,t++;return t-1}}},73:function(e,t,s){"use strict";s.r(t),s.d(t,"ImportResourceStatus",(function(){return r}));const r={NONE:"NONE",UPLOADING:"UPLOADING",UPLOAD_ERROR:"UPLOAD_ERROR",UPLOADED:"UPLOADED",PENDING:"PENDING",IMPORTING:"IMPORTING",DONE:"DONE",ERROR:"ERROR",INTERRUPTING:"INTERRUPTING"}},90:function(e,t,s){"use strict";s.r(t),s.d(t,"ImportResourceType",(function(){return r}));const r={DIRECTORY:"directory",FILE:"file",URL:"url",TEXT:"text"}}}]);
+(window.webpackJsonp=window.webpackJsonp||[]).push([[57,98,191,192],{132:function(e,t,s){"use strict";s.r(t),s.d(t,"ImportResourceTreeElement",(function(){return o}));var r=s(73),i=s(30);class o{constructor(){this.importResource=void 0,this.parent=void 0,this.partialSelected=!1,this.indent=0,this.isImportable=!1,this.hasOngoingImport=!1,this.hasStatusInfo=!1,this.canResetStatus=!1,this.name="",this.shortenedName="",this.path="",this.shortenedContext="",this.selected=!1,this.directories=[],this.files=[],this.isImportedBiggerThanModified=!1,this.isModifiedBiggerThanImported=!1,this.isEditable=!1,this.iconClass="",this.shortenedMessage=""}addResource(e){if(e.isFile())this.files.push(e);else{if(!e.isDirectory())throw new Error("Unsupported resource type!");this.directories.push(e)}}removeResource(e){e.isFile()?this.files=this.files.filter(t=>e.importResource.name!==t.importResource.name):this.directories=this.directories.filter(t=>e.importResource.name!==t.importResource.name)}remove(){this.isRoot()||this.parent.removeResource(this)}getOrCreateDirectory(e){let t=this.directories.find(t=>t.name===e);return t||(t=new o,t.name=e,this.directories.push(t)),t}getRoot(){return this.isRoot()?this:this.parent.getRoot()}isRoot(){return void 0===this.parent}isDirectory(){return this.importResource.isDirectory()}isFile(){return!this.isRoot()&&this.importResource.isFile()}isEmpty(){return 0===this.directories.length&&0===this.files.length}toList(){const e=[];return this.parent&&e.push(this),this.directories.forEach(t=>{e.push(...t.toList())}),e.push(...this.files),e}setSelection(e,t=!0){this.selected=e,this.files.forEach(t=>t.setSelection(e,!1)),this.directories.forEach(t=>t.setSelection(e,!1)),t&&this.getRoot().updateSelectionState()}updateSelectionState(){if(this.directories.forEach(e=>e.updateSelectionState()),this.parent&&this.isDirectory()){const e=this.hasUnselectedChildren(),t=this.hasSelectedChildren();this.selected=t&&!e,this.partialSelected=t&&e}}hasUnselectedChildren(){return this.files.some(e=>!e.selected)||this.directories.some(e=>!e.selected||e.hasUnselectedChildren())}hasSelectedChildren(){return this.files.some(e=>e.selected)||this.directories.some(e=>e.selected||e.hasSelectedChildren())}selectAllWithStatus(e){this.importResource&&e.indexOf(this.importResource.status)>-1&&(this.selected=!0),this.files.forEach(t=>t.selectAllWithStatus(e)),this.directories.forEach(t=>t.selectAllWithStatus(e))}getAllSelectedForImport(){const e=[],t=this.isRoot();return!t&&this.selected&&e.push(this),(t||this.isDirectory()&&!this.selected)&&(this.files.forEach(t=>e.push(...t.getAllSelectedForImport())),this.directories.forEach(t=>e.push(...t.getAllSelectedForImport()))),Object(i.cloneDeep)(e)}getAllSelected(){const e=[];return!this.isRoot()&&this.selected&&e.push(this),this.files.forEach(t=>e.push(...t.getAllSelected())),this.directories.forEach(t=>e.push(...t.getAllSelected())),Object(i.cloneDeep)(e)}getSelectedImportedResources(){return this.getAllSelected().some(e=>e.importResource.status===r.ImportResourceStatus.DONE)}deselectAll(){this.files.forEach(e=>e.deselectAll()),this.directories.forEach(e=>e.deselectAll()),this.selected=!1,this.partialSelected=!1}getAllSelectedFiles(){const e=[];return!this.isRoot()&&this.selected&&e.push(this.importResource),this.files.forEach(t=>e.push(...t.getAllSelectedFiles())),this.directories.forEach(t=>e.push(...t.getAllSelectedFiles())),e}getAllSelectedFilesNames(){return this.getAllSelectedFiles().map(e=>e.name)}getResourceByName(e){if(this.importResource&&this.importResource.name===e)return this;const t=this.files.find(t=>t.importResource.name===e);if(t)return t;for(const t of this.directories){const s=t.getResourceByName(e);if(s)return s}return null}hasTextInResourcesName(e){return!!this.importResource.name.toLowerCase().includes(e.toLowerCase())||(!!this.files.some(t=>t.importResource.name.toLowerCase().includes(e.toLowerCase()))||this.directories.some(t=>t.hasTextInDirectoriesName(e)))}hasTextInDirectoriesName(e){return!(!this.isDirectory()||!this.name.toLowerCase().includes(e.toLowerCase()))||this.directories.some(t=>t.hasTextInDirectoriesName(e))}hasTextInFilesName(e){return!(!this.isFile()||!this.name.toLowerCase().includes(e.toLowerCase()))||(!!this.files.some(t=>t.importResource.name.toLowerCase().includes(e.toLowerCase()))||this.directories.some(t=>t.hasTextInFilesName(e)))}sort(e){this.directories.sort(e),this.files.sort(e),this.directories.forEach(t=>t.sort(e))}getSize(){return this.toList().length}}},249:function(e,t,s){"use strict";s.r(t),s.d(t,"INDENT",(function(){return c})),s.d(t,"serverImportResourceTypeToIconMapping",(function(){return n})),s.d(t,"userImportResourceTypeToIconMapping",(function(){return a})),s.d(t,"ImportResourceTreeService",(function(){return u}));var r=s(89),i=s(132),o=s(73);const c=30,n=new Map;n.set(r.ImportResourceType.DIRECTORY,"icon-folder"),n.set(r.ImportResourceType.FILE,"icon-file");const a=new Map;a.set(r.ImportResourceType.DIRECTORY,"icon-folder"),a.set(r.ImportResourceType.FILE,"icon-upload"),a.set(r.ImportResourceType.URL,"icon-link"),a.set(r.ImportResourceType.TEXT,"icon-sparql");class u{static toImportResourceTree(e,t){const s=new i.ImportResourceTreeElement;return e.forEach(e=>{u.addResourceToTree(s,e,t)}),s}static mergeResourceTree(e,t,s){e.getRoot().toList().forEach(e=>{t.find(t=>t.name===e.importResource.name)||e.remove()}),t.forEach(t=>{const r=e.getResourceByName(t.name);r?r.importResource=t:u.addResourceToTree(e,t,s)})}static addResourceToTree(e,t,s){const r=u.getPath(t);let o;o=t.isDirectory()?r:r.slice(0,r.length-1);const c=u.getOrCreateParent(e,o);if(t.isFile()){const e=new i.ImportResourceTreeElement;return e.parent=c,e.importResource=t,e.path=r.join("/"),e.name=r[r.length-1],c.addResource(e),u.setIcon(e,s),e}return c.importResource=t,c.path=r.join("/"),u.setIcon(c,s),c}static setIcon(e,t){e.iconClass=t?a.get(e.importResource.type):n.get(e.importResource.type)}static getOrCreateParent(e,t){let s=e;return t.forEach(e=>{const t=s.getOrCreateDirectory(e);t.parent=s,s=t}),s}static getPath(e){if(e.isURL())return[e.name];const t=/[/\\]/;return t.test(e.name)?e.name.split(t):[e.name]}static calculateElementIndent(e){e.indent=8+u.getParentsCount(e)*c+"px",e.directories.forEach(e=>u.calculateElementIndent(e)),e.files.forEach(e=>u.calculateElementIndent(e))}static setupAfterTreeInitProperties(e){e.isRoot()||(e.isImportable=u.isImportable(e.importResource),e.hasOngoingImport=u.hasOngoingImport(e.importResource),e.canResetStatus=u.canResetStatus(e.importResource),e.hasStatusInfo="DONE"===e.importResource.status||"ERROR"===e.importResource.status,e.isEditable=e.importResource.isText(),u.setupShortenedMessage(e),u.setupShortenedContext(e),u.setupShortenedName(e),u.setupImportedAndModifiedComparableProperties(e)),e.directories.forEach(e=>u.setupAfterTreeInitProperties(e)),e.files.forEach(e=>u.setupAfterTreeInitProperties(e))}static setupShortenedMessage(e){const t=e.importResource?e.importResource.message:"";t&&t.length>150&&(e.shortenedMessage=t.substring(0,150)+"...")}static setupShortenedContext(e){const t=e.importResource?e.importResource.context:"";t.length>63&&(e.shortenedContext=t.substring(0,30)+"..."+t.substring(t.length-30))}static setupShortenedName(e){const t=e.name||"";t.length>123&&(e.shortenedName=t.substring(0,30)+"..."+t.substring(t.length-30))}static setupImportedAndModifiedComparableProperties(e){const t=e.importResource;if(t){if(0===t.importedOn||0===t.modifiedOn||t.importedOn===t.modifiedOn)return;e.isImportedBiggerThanModified=t.importedOn>t.modifiedOn,e.isModifiedBiggerThanImported=!e.isImportedBiggerThanModified}}static isImportable(e){return e.status!==o.ImportResourceStatus.IMPORTING&&e.status!==o.ImportResourceStatus.UPLOADING&&e.status!==o.ImportResourceStatus.PENDING&&e.status!==o.ImportResourceStatus.INTERRUPTING&&e.status!==o.ImportResourceStatus.UPLOADING&&e.status!==o.ImportResourceStatus.UPLOADED&&e.status!==o.ImportResourceStatus.UPLOAD_ERROR}static hasOngoingImport(e){return e.status===o.ImportResourceStatus.IMPORTING||e.status===o.ImportResourceStatus.UPLOADING||e.status===o.ImportResourceStatus.PENDING||e.status===o.ImportResourceStatus.INTERRUPTING}static canResetStatus(e){return e.status===o.ImportResourceStatus.DONE||e.status===o.ImportResourceStatus.ERROR}static getParentsCount(e){let t=0;if(void 0===e.parent)return t;let s=e.parent;for(;s;)s=s.parent,t++;return t-1}}},73:function(e,t,s){"use strict";s.r(t),s.d(t,"ImportResourceStatus",(function(){return r}));const r={NONE:"NONE",UPLOADING:"UPLOADING",UPLOAD_ERROR:"UPLOAD_ERROR",UPLOADED:"UPLOADED",PENDING:"PENDING",IMPORTING:"IMPORTING",DONE:"DONE",ERROR:"ERROR",INTERRUPTING:"INTERRUPTING"}},89:function(e,t,s){"use strict";s.r(t),s.d(t,"ImportResourceType",(function(){return r}));const r={DIRECTORY:"directory",FILE:"file",URL:"url",TEXT:"text"}}}]);

package/dist/58.297babf6b2bff44c12d9.bundle.js

@@ -0,0 +1 @@
+(window.webpackJsonp=window.webpackJsonp||[]).push([[58,102,185,300],{209:function(t,e,s){"use strict";s.r(e),s.d(e,"AgentFormModel",(function(){return n})),s.d(e,"ExtractionMethodsFormModel",(function(){return o})),s.d(e,"ExtractionMethodFormModel",(function(){return a})),s.d(e,"AdditionalExtractionMethodsFormModel",(function(){return h})),s.d(e,"AdditionalExtractionMethodFormModel",(function(){return l})),s.d(e,"AgentInstructionsFormModel",(function(){return d}));var i=s(74),r=s(79);class n{constructor(t){this._id=t&&t.id,this._name=t&&t.name,this._repositoryId=t&&t.repositoryId,this._model=t&&t.model||"gpt-4o",this._temperature=t&&t.temperature||new i.NumericRangeModel({value:.7,minValue:0,maxValue:2,step:.1}),this._topP=t&&t.topP||new i.NumericRangeModel({value:1,minValue:0,maxValue:1,step:.1}),this._seed=t&&t.seed,this._instructions=t&&t.instructions,this._assistantExtractionMethods=t&&t.assistantExtractionMethods||this.getDefaultExtractionMethods(),this._additionalExtractionMethods=t&&t.additionalExtractionMethods||this.getDefaultAdditionalExtractionMethod()}getDefaultExtractionMethods(){const t=[];return t.push(new a({method:r.ExtractionMethod.SPARQL,ontologyGraph:"http://example.com/swgraph",sparqlQuery:new i.TextFieldModel({value:"select ?s ?p ?o where {?s ?p ?o .}",minLength:1,maxLength:2380}),selected:!1})),t.push(new a({method:r.ExtractionMethod.FTS_SEARCH,maxNumberOfTriplesPerCall:null,selected:!1})),t.push(new a({method:r.ExtractionMethod.SIMILARITY,similarityIndex:null,similarityIndexThreshold:new i.NumericRangeModel({value:.6,minValue:0,maxValue:1,step:.1}),maxNumberOfTriplesPerCall:null,selected:!1})),t.push(new a({method:r.ExtractionMethod.RETRIEVAL,retrievalConnectorInstance:null,maxNumberOfTriplesPerCall:null,queryTemplate:new i.TextFieldModel({value:'{"query": "string"}',minLength:1,maxLength:2380}),selected:!1})),new o(t)}getDefaultAdditionalExtractionMethod(){const t=[];return t.push(new l({method:r.AdditionalExtractionMethod.IRI_DISCOVERY_SEARCH})),new h(t)}toPayload(){return{id:this.id,name:this._name,repositoryId:this._repositoryId,model:this._model,temperature:this._temperature.value,topP:this._topP.value,seed:this._seed,assistantsInstructions:this._instructions.toPayload(),assistantExtractionMethods:this._assistantExtractionMethods.toPayload(),additionalExtractionMethods:this._additionalExtractionMethods.toPayload()}}hasExtractionMethodSelected(){return this._assistantExtractionMethods.extractionMethods.some(t=>t.selected)}get id(){return this._id}set id(t){this._id=t}get name(){return this._name}set name(t){this._name=t}get repositoryId(){return this._repositoryId}set repositoryId(t){this._repositoryId=t}get model(){return this._model}set model(t){this._model=t}get temperature(){return this._temperature}set temperature(t){this._temperature=t}get topP(){return this._topP}set topP(t){this._topP=t}get seed(){return this._seed}set seed(t){this._seed=t}get instructions(){return this._instructions}set instructions(t){this._instructions=t}get assistantExtractionMethods(){return this._assistantExtractionMethods}set assistantExtractionMethods(t){this._assistantExtractionMethods=t}get additionalExtractionMethods(){return this._additionalExtractionMethods}set additionalExtractionMethods(t){this._additionalExtractionMethods=t}}class o{constructor(t){this._extractionMethods=t}toPayload(){return this._extractionMethods.filter(t=>t.selected).map(t=>t.toPayload())}findExtractionMethodIndex(t){return this._extractionMethods.findIndex(e=>e.method===t)}setExtractionMethod(t){const e=this.findExtractionMethodIndex(t.method);-1!==e&&(this._extractionMethods[e]=t)}get extractionMethods(){return this._extractionMethods}set extractionMethods(t){this._extractionMethods=t}getExtractionMethod(t){return this._extractionMethods.find(e=>e.method===t)}getSimilarityExtractionMethod(){return this.getExtractionMethod(r.ExtractionMethod.SIMILARITY)}getRetrievalExtractionMethod(){return this.getExtractionMethod(r.ExtractionMethod.RETRIEVAL)}}class a{constructor(t){this._selected=t.selected||!1,this._method=t.method,this._sparqlOption=t.sparqlOption,this._ontologyGraph=t.ontologyGraph,this._sparqlQuery=t.sparqlQuery,this._maxNumberOfTriplesPerCall=t.maxNumberOfTriplesPerCall,this._similarityIndex=t.similarityIndex,this._similarityIndexThreshold=t.similarityIndexThreshold,this._queryTemplate=t.queryTemplate,this._retrievalConnectorInstance=t.retrievalConnectorInstance,this._expanded=void 0!==t.expanded&&t.expanded}toggleCollapse(){this._expanded=!this._expanded}toPayload(){const t={};return t.method=this._method?this._method:null,"ontologyGraph"===this._sparqlOption?t.ontologyGraph=this._ontologyGraph?this._ontologyGraph:null:"sparqlQuery"===this._sparqlOption&&(t.sparqlQuery=this._sparqlQuery?this._sparqlQuery.value:null),this._maxNumberOfTriplesPerCall&&(t.maxNumberOfTriplesPerCall=this._maxNumberOfTriplesPerCall),this._similarityIndex&&(t.similarityIndex=this._similarityIndex),this._similarityIndexThreshold&&this._similarityIndexThreshold.value&&(t.similarityIndexThreshold=parseFloat(this._similarityIndexThreshold.value)),this._queryTemplate&&this._queryTemplate.value&&(t.queryTemplate=this._queryTemplate.value),this._retrievalConnectorInstance&&(t.retrievalConnectorInstance=this._retrievalConnectorInstance),t}get selected(){return this._selected}set selected(t){this._selected=t}get method(){return this._method}set method(t){this._method=t}get sparqlOption(){return this._sparqlOption}set sparqlOption(t){this._sparqlOption=t}get sparqlQuery(){return this._sparqlQuery}set sparqlQuery(t){this._sparqlQuery=t}get ontologyGraph(){return this._ontologyGraph}set ontologyGraph(t){this._ontologyGraph=t}get maxNumberOfTriplesPerCall(){return this._maxNumberOfTriplesPerCall}set maxNumberOfTriplesPerCall(t){this._maxNumberOfTriplesPerCall=t}get similarityIndex(){return this._similarityIndex}set similarityIndex(t){this._similarityIndex=t}get similarityIndexThreshold(){return this._similarityIndexThreshold}set similarityIndexThreshold(t){this._similarityIndexThreshold=t}get queryTemplate(){return this._queryTemplate}set queryTemplate(t){this._queryTemplate=t}get retrievalConnectorInstance(){return this._retrievalConnectorInstance}set retrievalConnectorInstance(t){this._retrievalConnectorInstance=t}get expanded(){return this._expanded}set expanded(t){this._expanded=t}}class h{constructor(t){this._additionalExtractionMethods=t}toPayload(){return this._additionalExtractionMethods.filter(t=>t.selected).map(t=>t.toPayload())}get additionalExtractionMethods(){return this._additionalExtractionMethods}set additionalExtractionMethods(t){this._additionalExtractionMethods=t}}class l{constructor(t){this._selected=t.selected||!1,this._method=t.method}toPayload(){return{method:this._method}}get selected(){return this._selected}set selected(t){this._selected=t}get method(){return this._method}set method(t){this._method=t}}class d{constructor(t){this._systemInstruction=t.systemInstruction,this._systemInstructionCopy=t.systemInstruction,this._userInstruction=t.userInstruction,this._userInstructionCopy=t.userInstruction}toPayload(){return{systemInstruction:this._systemInstruction,userInstruction:this._userInstruction}}get systemInstruction(){return this._systemInstruction}set systemInstruction(t){this._systemInstruction=t}get systemInstructionCopy(){return this._systemInstructionCopy}set systemInstructionCopy(t){this._systemInstructionCopy=t}get userInstruction(){return this._userInstruction}set 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I'll submit a set of publication abstracts discussing given disease and your task is to find in the abstracts any potential new biomarkers which are not yet listed in the appropriate databases. Each abstract is preceded by identifier - its PubMed id called for short PMID. \n\nReturn the set of biomarkers listed one per row, each marker followed by the | and PMID of the respective abstract if was mentioned in.\n\nExample: \nInput: 36418457\t[Amyotrophic lateral sclerosis (ALS) is a genetically and phenotypically heterogeneous disease results in the loss of motor neurons. Mounting information points to involvement of other systems including cognitive impairment. However, neither the valid biomarker for diagnosis nor effective therapeutic intervention is available for ALS. The present study is aimed at identifying potentially genetic biomarker that improves the diagnosis and treatment of ALS patients based on the data of the Gene Expression Omnibus. We retrieved datasets and conducted a weighted gene co-expression network analysis (WGCNA) to identify ALS-related co-expression genes. Functional enrichment analysis was performed to determine the features and pathways of the main modules. We then constructed an ALS-related model using the least absolute shrinkage and selection operator (LASSO) regression analysis and verified the model by the receiver operating characteristic (ROC) curve. Besides we screened the non-preserved gene modules in FTD and ALS-mimic disorders to distinct ALS-related genes from disorders with overlapping genes and features. Altogether, 4198 common genes between datasets with the most variation were analyzed and 16 distinct modules were identified through WGCNA. Blue module had the most correlation with ALS and functionally enriched in pathways of neurodegeneration-multiple diseases', 'amyotrophic lateral sclerosis', and 'endocytosis' KEGG terms. Further, some of other modules related to ALS were enriched in 'autophagy' and 'amyotrophic lateral sclerosis'. The 30 top of hub genes were recruited to a LASSO regression model and 5 genes (BCLAF1, GNA13, ARL6IP5, ARGLU1, and YPEL5) were identified as potentially diagnostic ALS biomarkers with validating of the ROC curve and AUC value.]\n\nYour response: BCLAF1|36418457\nGNA13|36418457\nARL6IP5|36418457\nARGLU1|36418457\nYPEL5|36418457",userInstruction:null},assistantExtractionMethods:[],maxNumberOfTriplesPerCall:null}];const h={id:"id",name:"Quadro",model:"gpt-4o",temperature:.7,topP:1,seed:0,repositoryId:"test-repository",instructions:{systemInstruction:"You are a helpful, knowledgeable, and friendly assistant. Your goal is to provide clear and accurate information while being polite, respectful, and professional.",userInstruction:"If you need to write a SPARQL query, use only the classes and properties provided in the schema and don't invent or guess any. 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this._items[this._items.length-1]}}},85:function(e,t,s){"use strict";s.r(t),s.d(t,"ChatModel",(function(){return n})),s.d(t,"ChatByDayModel",(function(){return r})),s.d(t,"ChatsListModel",(function(){return i}));var a=s(75);class n{constructor(e,t){this.hashGenerator=t,this._id=e.id,this._name=e.name,this._timestamp=e.timestamp,this._chatHistory=e.chatHistory||new a.ChatItemsListModel,this.hash=this.generateHash()}generateHash(){return this.hashGenerator(JSON.stringify(this))}get id(){return this._id}set id(e){this._id=e}get name(){return this._name}set name(e){this.generateHash(),this._name=e}get timestamp(){return this._timestamp}set timestamp(e){this._timestamp=e}get chatHistory(){return this._chatHistory}set chatHistory(e){this._chatHistory=e||new a.ChatItemsListModel}toRenameRequestPayload(){return{name:this._name}}}class r{constructor(e){this._day=e.day,this._timestamp=e.timestamp,this._chats=e.chats}get day(){return this._day}set day(e){this._day=e}get timestamp(){return this._timestamp}set timestamp(e){this._timestamp=e}get chats(){return this._chats}set chats(e){this._chats=e}}class i{constructor(e){this._chats=e||[],this._chatsByDay=[],this.sortByTime(),this.updateChatsByDay()}sortByTime(){this._chats.sort((e,t)=>t.timestamp-e.timestamp)}deleteChat(e){this._chats=this._chats.filter(t=>t.id!==e.id),this.sortByTime(),this.updateChatsByDay()}updateChatsByDay(){this._chatsByDay=[],this._chats.forEach(e=>{const t=new Date(1e3*e.timestamp).toDateString(),s=this._chatsByDay.find(e=>e.day===t);s?s.chats.push(e):this._chatsByDay.push(new r({day:t,timestamp:1e3*e.timestamp,chats:[e]}))})}appendChat(e){this._chats.push(e),this.sortByTime(),this.updateChatsByDay()}replaceChat(e,t){this._chats=this._chats.map(s=>s.id===t.id?e:s),this.sortByTime(),this.updateChatsByDay()}isEmpty(){return 0===this._chats.length}getFirstChat(){return this._chats[0]}deselectAll(){this._chats.forEach(e=>{e.selected=!1})}selectChat(e){this.deselectAll(),this._chats.forEach(t=>{t.selected=t.id===e.id})}getChat(e){return this._chats.find(t=>t.id===e)}getNonPersistedChat(){return this._chats.find(e=>!e.id)}renameChat(e){const t=this._chats.find(t=>t.id===e.id);t&&(t.name=e.name)}get chats(){return this._chats}set chats(e){this._chats=e}get chatsByDay(){return this._chatsByDay}set chatsByDay(e){this._chatsByDay=e}}}}]);

package/dist/{60.b211600daa77ec578d04.bundle.js → 60.89030184a19b4a046323.bundle.js}

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