graphdb-workbench-tests 3.0.1 → 3.1.0-TR1

package/fixtures/locale-en.json

@@ -194,7 +194,8 @@
             "actions": {
                 "replace_node": "Replace node",
                 "delete_node": "Delete node",
-                "cannot_delete_node": "You cannot remove more than half of the healthy nodes at the same time",
+                "cannot_delete_node": "The current node cannot be removed",
+                "cannot_replace_node": "You cannot replace this node",
                 "add_node": "Add node",
                 "add_node_tooltip": "Add node to current cluster",
                 "cancel": "Cancel",
@@ -208,6 +209,11 @@
             },
             "field_placeholders": {
                 "location": "http://my-hostname:7200"
+            },
+            "copy_to_clipboard": {
+                "copied": {
+                    "tooltip": "IRI copied"
+                }
             }
         }
     },
@@ -391,6 +397,9 @@
                 "called": "Called {{('ttyg.chat_panel.query_name.' + name) | translate}}",
                 "no_query": "There is no query."
             },
+            "placeholder": {
+                "ask-input": "Ask anything"
+            },
             "query_name": {
                 "sparql_query":"SPARQL",
                 "fts_search": "Full-text search",
@@ -413,6 +422,13 @@
             "dialog": {
                 "confirm_repository_change": {
                     "body": "If you proceed with executing of SPARQL query, GraphDB will open in a new tab and switch to the <b>{{repositoryId}}</b> repository."
+                },
+                "token_usage_info": {
+                    "title": "Tokens usage",
+                    "prompt_tokens_info": "{{promptTokens}} prompt tokens",
+                    "prompt_tokens_info_description": "Tokens used to process instructions, chat history and user input.",
+                    "completion_tokens_info": "{{completionTokens}} completion tokens",
+                    "completion_tokens_info_description": "Tokens used to generate the response"
                 }
             },
             "messages": {
@@ -424,6 +440,7 @@
             "loading_agents": "Loading agents...",
             "deleting_agent": "Deleting agent...",
             "deleted_repository": "Deleted repository",
+            "incompatible_agent": "Incompatible with the current GraphDB version",
             "create_agent_modal": {
                 "title": {
                     "create": "Create Agent",
@@ -603,7 +620,11 @@
                                 }
                             }
                         },
-                        "autocomplete_disabled_message": "You must <a href=\"{{autocompleteIndexPage}}\" target=\"_blank\">enable the Autocomplete index</a> on chosen repository to use this method",
+                        "autocomplete_disabled_message": {
+                            "message_1": "You must",
+                            "message_2": "enable the Autocomplete index",
+                            "message_3": "on chosen repository to use this method"
+                        },
                         "autocomplete_max_number_of_results_per_call": {
                             "label": "Max number of results (IRIs) per call",
                             "placeholder": "Automatic value",
@@ -636,6 +657,9 @@
                     },
                     "confirm_repository_change_before_open_connectors": {
                         "body": "If you proceed with creating the ChatGPT Retrieval connector, GraphDB will open in a new tab and switch to the <b>{{repositoryId}}</b> repository."
+                    },
+                    "confirm_repository_change_before_open_autocomplete_index": {
+                        "body": "If you proceed with enabling the autocomplete index, GraphDB will open in a new tab and switch to the <b>{{repositoryId}}</b> repository."
                     }
                 }
             },
@@ -2467,6 +2491,9 @@
         "dates": {
             "today": "Today",
             "yesterday": "Yesterday"
+        },
+        "messages": {
+            "copied_to_clipboard": "Copied to clipboard"
         }
     },
     "common.confirm.delete": "Confirm delete",
@@ -2505,6 +2532,7 @@
     "common.show_all": "Show all",
     "common.hide": "Hide",
     "common.learn_more_in_documentation": "Learn more in the GraphDB documentation",
+    "click.to": "Click to",
     "paginator.first.page.label": "First",
     "paginator.last.page.label": "Last",
     "deactivate": "deactivate",

package/fixtures/ttyg/agent/get-agent-list-with-incompatible-agents.json

@@ -0,0 +1,79 @@
+[
+    {
+        "id": "asst_gAPcrHQQ9ZIxD5eXWH2BNFfo",
+        "name": "agent-1",
+        "model": "gpt-4o",
+        "temperature": 0.0,
+        "topP": 0.0,
+        "seed": null,
+        "repositoryId": "starwars",
+        "compatibility": "INCOMPATIBLE",
+        "instructions": {
+            "systemInstruction": "",
+            "userInstruction": ""
+        },
+        "assistantExtractionMethods": [
+            {
+                "method": "fts_search",
+                "maxNumberOfTriplesPerCall": 44
+            }
+        ]
+    },
+    {
+        "id": "asst_qMyCpCBmqxV9I2B8UoMfFzc5",
+        "name": "agent-2",
+        "model": "gpt-4o",
+        "temperature": 0.0,
+        "topP": 0.0,
+        "seed": null,
+        "repositoryId": "Not existing repo",
+        "compatibility": "COMPATIBLE",
+        "instructions": {
+            "systemInstruction": "string\n\nstring",
+            "userInstruction": "string"
+        },
+        "assistantExtractionMethods": [
+            {
+                "method": "fts_search"
+            }
+        ]
+    },
+    {
+        "id": "asst_Cr0RxobrY07WpOvvyQilEWMI",
+        "name": "Databricks-general-unbiased",
+        "model": "gpt-4o-2024-08-06",
+        "temperature": 1.0,
+        "topP": 1.0,
+        "seed": null,
+        "repositoryId": "starwars",
+        "instructions": {
+            "systemInstruction": "You are helpful assistant in discovering information regarding diagnostic biomarkers.",
+            "userInstruction": null
+        },
+        "assistantExtractionMethods": [
+            {
+                "method": "fts_search",
+                "maxNumberOfTriplesPerCall": 44
+            }
+        ]
+    },
+    {
+        "id": "asst_5GxNYTdaOh7Tl6lLl6Pya2aH",
+        "name": "Databricks-biomarkers",
+        "model": "gpt-3.5-turbo-0125",
+        "temperature": 1.0,
+        "topP": 1.0,
+        "seed": null,
+        "repositoryId": "biomarkers",
+        "instructions": {
+            "systemInstruction": "You're a helpful assistant in discovering new diagnostic biomarkers for given diseases. I'll submit a set of publication abstracts discussing given disease and your task is to find in the abstracts any potential new biomarkers which are not yet listed in the appropriate databases. Each abstract is preceded by identifier - its PubMed id called for short PMID. \n\nReturn the set of biomarkers listed one per row, each marker followed by the | and PMID of the respective abstract if was mentioned in.\n\nExample: \nInput: 36418457\t[Amyotrophic lateral sclerosis (ALS) is a genetically and phenotypically heterogeneous disease results in the loss of motor neurons. Mounting information points to involvement of other systems including cognitive impairment. However, neither the valid biomarker for diagnosis nor effective therapeutic intervention is available for ALS. The present study is aimed at identifying potentially genetic biomarker that improves the diagnosis and treatment of ALS patients based on the data of the Gene Expression Omnibus. We retrieved datasets and conducted a weighted gene co-expression network analysis (WGCNA) to identify ALS-related co-expression genes. Functional enrichment analysis was performed to determine the features and pathways of the main modules. We then constructed an ALS-related model using the least absolute shrinkage and selection operator (LASSO) regression analysis and verified the model by the receiver operating characteristic (ROC) curve. Besides we screened the non-preserved gene modules in FTD and ALS-mimic disorders to distinct ALS-related genes from disorders with overlapping genes and features. Altogether, 4198 common genes between datasets with the most variation were analyzed and 16 distinct modules were identified through WGCNA. Blue module had the most correlation with ALS and functionally enriched in pathways of neurodegeneration-multiple diseases', 'amyotrophic lateral sclerosis', and 'endocytosis' KEGG terms. Further, some of other modules related to ALS were enriched in 'autophagy' and 'amyotrophic lateral sclerosis'. The 30 top of hub genes were recruited to a LASSO regression model and 5 genes (BCLAF1, GNA13, ARL6IP5, ARGLU1, and YPEL5) were identified as potentially diagnostic ALS biomarkers with validating of the ROC curve and AUC value.]\n\nYour response: BCLAF1|36418457\nGNA13|36418457\nARL6IP5|36418457\nARGLU1|36418457\nYPEL5|36418457",
+            "userInstruction": null
+        },
+        "assistantExtractionMethods": [
+            {
+                "method": "fts_search",
+                "maxNumberOfTriplesPerCall": 44
+            }
+        ]
+    }
+]

package/fixtures/ttyg/chats/ask-question.json

@@ -10,7 +10,12 @@
             "agentId": "requestBody.agentId",
             "message": "Reply to '${requestBody.question}' Second`",
             "timestamp": 53425243523,
-            "name": null
+            "name": null,
+            "usage": {
+                "completionTokens": 82,
+                "promptTokens": 10246,
+                "totalTokens": 10328
+            }
         },
         {
             "id": "msg_Bn07kVDCYT1qmgu1G7Zw0KNe_",
@@ -19,7 +24,12 @@
             "agentId": "requestBody.agentId",
             "message": "Reply to '${requestBody.question}",
             "timestamp": 23432424242,
-            "name": null
+            "name": null,
+            "usage": {
+                "completionTokens": 80,
+                "promptTokens": 10244,
+                "totalTokens": 10324
+            }
         }
     ]
 }

package/fixtures/ttyg/chats/get-chat.json

@@ -37,7 +37,12 @@
                 "role": "assistant",
                 "message": "Han Solo is a fictional character in the Star ",
                 "timestamp": "1725875332",
-                "name": null
+                "name": null,
+                "usage": {
+                    "completionTokens": 81,
+                    "promptTokens": 10245,
+                    "totalTokens": 10326
+                }
             }
         ],
         "timestamp": "1725875483"

package/integration/explore/visual-graph/graphs-config.spec.js

@@ -217,12 +217,7 @@ describe('Graphs config', () => {
         VisualGraphSteps.getGraphConfigSearchPanelName().should('contain', graphConfigName);
     });
 
-    it('Should create graph config with fixed node', {
-        retries: {
-            runMode: 1,
-            openMode: 0
-        }
-    }, () => {
+    it('Should create graph config with fixed node', () => {
         cy.enableAutocomplete(repositoryId);
         // Given I have started a create config wizard
         startCreateConfigWizard();

package/integration/explore/visual-graph/visual.graph.spec.js

@@ -147,12 +147,7 @@ describe('Visual graph screen validation', () => {
             });
         });
 
-        it('Test search for a valid resource with links', {
-            retries: {
-                runMode: 1,
-                openMode: 0
-            }
-        }, () => {
+        it('Test search for a valid resource with links', () => {
             VisualGraphSteps.openUSRegionUri();
             // Check include inferred
             VisualGraphSteps.toggleInferredStatements(true);

package/integration/graphql/edit-graphql-enpoint.spec.js

@@ -102,7 +102,7 @@ describe('Graphql: edit endpoint settings', () => {
                     "langValidate": null,
                     "langImplicit": null,
                     "langDefaultNameFetch": "NONE",
-                    "langAppendDefaultNameFetch": "true",
+                    "langAppendDefaultNameFetch": true,
                     "includeInferred": true,
                     "expandOwlSameAs": true,
                     "enableMutations": null,
@@ -113,7 +113,7 @@ describe('Graphql: edit endpoint settings', () => {
                     "queryPrefix": null,
                     "mutationPrefix": null,
                     "sparqlFederatedServices": "{}",
-                    "sparqlFederatedServicesPriority": 'Deployment configurations',
+                    "sparqlFederatedServicesPriority": "Deployment configurations",
                 }
             });
         });

package/integration/home/cookie-policy.spec.js

@@ -41,12 +41,7 @@ describe('Cookie policy', () => {
         HomeSteps.getCookieConsentPopup().should('not.exist');
     });
 
-    it('Should NOT show cookie policy to user when tracking is not applicable', {
-        retries: {
-            runMode: 1,
-            openMode: 0
-        }
-    },  () => {
+    it('Should NOT show cookie policy to user when tracking is not applicable', () => {
         SettingsSteps.visit();
         SettingsSteps.getCookiePolicyButton().should('not.exist');
     });

package/integration/import/import-user-data.spec.js

@@ -31,8 +31,12 @@ describe('Import user data', () => {
         ImportUserDataSteps.getPageInfoPopover()
             .should('be.visible')
             .find('a')
-            .should('have.attr', 'href', 'https://graphdb.ontotext.com/documentation/master/loading-data-using-the-workbench.html')
-            .and('contain.text', 'Learn more in the GraphDB documentation');
+            .should('contain.text', 'Learn more in the GraphDB documentation')
+            .invoke('attr', 'href')
+            .then((href) => {
+                expect(href).to.match(/https:\/\/graphdb\.ontotext\.com\/documentation\/[^/]+\/loading-data-using-the-workbench\.html/);
+            });
+
         ImportUserDataSteps.hidePageInfoPopover();
         // And user data import tab should be selected by default
         ImportUserDataSteps.getActiveTab().should('have.text', 'User data');

package/integration/setup/autocomplete.spec.js

@@ -66,4 +66,28 @@ describe('Autocomplete ', () => {
             .should('be.visible')
             .and('not.be.disabled');
     });
+
+    it('should allow add and edit of autocomplete label', () => {
+        // Given I'm on the Autocomplete page
+        AutocompleteSteps.visit();
+        cy.wait('@get-license');
+        AutocompleteSteps.waitUntilAutocompletePageIsLoaded();
+        // The table should not contain this label
+        AutocompleteSteps.getAutocompleteLabels().should('not.contain.text', 'http://xmlns.com/foaf/0.1/name');
+
+        // When I add a label
+        AutocompleteSteps.addLabelAndLanguage('http://xmlns.com/foaf/0.1/name', 'fr');
+        // Then the list should have my new label
+        AutocompleteSteps.getAutocompleteLabels().should('contain.text', 'http://xmlns.com/foaf/0.1/name');
+
+        // When I edit the new label
+        AutocompleteSteps.editLabelOnRow(0);
+        AutocompleteSteps.typeLabelIri('http://purl.org/dc/elements/1.1/title');
+        AutocompleteSteps.saveLabel();
+        // Then the list should no longer have the old label
+        AutocompleteSteps.getAutocompleteLabels().should('not.contain.text', 'http://xmlns.com/foaf/0.1/name');
+        // And instead have the edited label
+        AutocompleteSteps.getAutocompleteLabels().should('contain.text', 'http://purl.org/dc/elements/1.1/title');
+        AutocompleteSteps.getAutocompleteLabels().should('contain.text', 'fr');
+    });
 });

package/integration/setup/namespaces.spec.js

@@ -235,8 +235,9 @@ describe('Namespaces', () => {
         ApplicationSteps.getErrorNotifications().should('be.visible')
             .and('contain', 'Internal Server Error');
         // And the prefix and namespace fields should not be cleared to allow user to correct the error
+        // writing in the field above should clear the field first
         NamespaceSteps.getInlineNamespacePrefix(0).should('have.value', 'test1');
-        // NamespaceSteps.getInlineNamespaceValue(0).should('have.value', 'http://test.com');
+        NamespaceSteps.getInlineNamespaceValue(0).should('have.value', 'http://test.com');
     });
 
     it('Should allow to delete existing namespaces', () => {

package/integration/sparql-editor/saved-query/edit-query.spec.js

@@ -8,9 +8,11 @@ import {SaveQueryDialog} from "../../../steps/yasgui/save-query-dialog";
 describe('Edit saved queries', () => {
 
     let repositoryId;
+    let savedQueryName;
 
     beforeEach(() => {
         repositoryId = 'sparql-editor-' + Date.now();
+        savedQueryName = SavedQuery.generateQueryName();
         QueryStubs.stubQueryCountResponse();
         cy.createRepository({id: repositoryId});
         cy.presetRepository(repositoryId);
@@ -21,12 +23,12 @@ describe('Edit saved queries', () => {
     });
 
     afterEach(() => {
+        cy.deleteSavedQuery(savedQueryName);
         cy.deleteRepository(repositoryId);
     });
 
     it('Should prevent saving query with duplicated name', () => {
         // Given I have created a query
-        const savedQueryName = SavedQuery.generateQueryName();
         SavedQuery.create(savedQueryName);
         // When I open the saved queries popup
         YasguiSteps.showSavedQueries();
@@ -48,21 +50,35 @@ describe('Edit saved queries', () => {
         YasguiSteps.showSavedQueries();
         SavedQueriesDialog.editQueryByName(savedQueryName);
         SaveQueryDialog.getQueryField().should('have.value', 'select $s $p $o');
+        // Then I close the dialog
+        SaveQueryDialog.closeSaveQueryDialog();
+    });
+
+    // TODO skipped until .env can be updated with BE version, which includes the API changes
+    it.skip('should allow renaming saved query', () => {
+        // Given I have created a query
+        SavedQuery.create(savedQueryName);
+        // When I open the saved queries popup
+        YasguiSteps.showSavedQueries();
+        // And I edit the saved query
+        SavedQueriesDialog.editQueryByName(savedQueryName);
+        // Then the save query dialog should be opened
+        SaveQueryDialog.getQueryNameField().should('have.value', savedQueryName);
+        SaveQueryDialog.getQueryField().should('have.value', 'select *');
+        SaveQueryDialog.getIsPublicField().should('be.checked');
         // When I change the query name
-        // TODO: This currently won't work. The legacy implementation in the WB does the following:
-        // * First POST to create a new query with the new name
-        // * Then DELETE the query with the old name
-        // This is quite hackish and would require maintaining some state in the WB which is awkward.
-        // Better approach would be to think of a way to delegate this to the backend api for the edit.
-        // YasguiSteps.clearQueryNameField();
-        // savedQueryName = generateQueryName();
-        // YasguiSteps.writeQueryName(savedQueryName);
-        // YasguiSteps.saveQuery();
-        // // Then a new query should be created
-        // YasguiSteps.getSaveQueryDialog().should('not.exist');
-        // YasguiSteps.showSavedQueries();
-        // YasguiSteps.editQueryByName(savedQueryName);
-        // YasguiSteps.getQueryNameField().should('have.value', savedQueryName);
-        // YasguiSteps.getQueryField().should('have.value', 'select $s $p $o');
+        SaveQueryDialog.clearQueryNameField();
+        savedQueryName = SavedQuery.generateQueryName();
+        SaveQueryDialog.writeQueryName(savedQueryName);
+        // And try to save the query
+        SaveQueryDialog.saveQuery();
+        // Then the query should be updated
+        SaveQueryDialog.getSaveQueryDialog().should('not.exist');
+        YasguiSteps.showSavedQueries();
+        SavedQueriesDialog.editQueryByName(savedQueryName);
+        SaveQueryDialog.getQueryNameField().should('have.value', savedQueryName);
+        SaveQueryDialog.getQueryField().should('have.value', 'select *');
+        // Then I close the dialog
+        SaveQueryDialog.closeSaveQueryDialog();
     });
 });

package/integration/ttyg/agent-list.spec.js

@@ -73,4 +73,21 @@ describe('TTYG agent list', () => {
             {name: 'Databricks-biomarkers', repositoryId: 'biomarkers', isRepositoryDeleted: false}
         ]);
     });
+
+    it('should filter agent actions based on compatibility', () => {
+        TTYGStubs.stubAgentListWithIncompatibleGet();
+        // When: I visit the ttyg page with incompatible agents
+        TTYGViewSteps.visit();
+        // Then: Only the delete action should be available for incompatible agents
+        TTYGViewSteps.expandAgentsSidebar();
+        TTYGViewSteps.openAgentActionMenu(0);
+        TTYGViewSteps.getDeleteAgentButton(0).should('be.visible');
+        TTYGViewSteps.getCloneAgentButton(0).should('not.exist');
+        TTYGViewSteps.getEditAgentButton(0).should('not.exist');
+        // And: All actions should be available for compatible agents
+        TTYGViewSteps.openAgentActionMenu(1);
+        TTYGViewSteps.getDeleteAgentButton(1).should('be.visible');
+        TTYGViewSteps.getCloneAgentButton(1).should('be.visible');
+        TTYGViewSteps.getEditAgentButton(1).should('be.visible');
+    });
 });

package/integration/ttyg/agent-select-menu.spec.js

@@ -29,6 +29,30 @@ describe('TTYG agent select menu', () => {
         ]);
     });
 
+    it('should not allow selecting an incompatible agent from the menu', () => {
+        TTYGStubs.stubAgentListWithIncompatibleGet();
+        // Given: I have opened the ttyg page
+        TTYGViewSteps.visit();
+        // And: The agent dropdown menu is not visible
+        TTYGViewSteps.getAgentsDropdownMenu().should('not.be.visible');
+        // And: No agent is currently selected
+        TTYGViewSteps.getAgentsMenuToggleButton().should('contain', 'Select an agent');
+
+        // When: I open the agent selection menu
+        TTYGViewSteps.openAgentsMenu();
+        // Then: I should see that the first agent is marked as incompatible
+        TTYGViewSteps.getAgentFromMenu(0)
+            .trigger('mouseover')
+            .should('have.css', 'cursor', 'not-allowed');
+
+        // When: I attempt to select an incompatible agent from the menu
+        TTYGViewSteps.selectAgent(0);
+        // Then: The incompatible agent should not be selected
+        TTYGViewSteps.getAgentsMenuToggleButton().should('contain', 'Select an agent');
+        // And: The dropdown menu should remain open
+        TTYGViewSteps.getAgentsDropdownMenu().should('be.visible');
+    });
+
     it('Should be able to select agent from the menu', () => {
         TTYGStubs.stubAgentListGet();
         // Given I have opened the ttyg page

package/integration/ttyg/chat-panel.spec.js

@@ -42,7 +42,7 @@ describe('Ttyg ChatPanel', () => {
         // When the new question input is empty.
         // The "Ask" button must be disabled.
         ChatPanelSteps.getAskButtonElement().should('be.disabled');
-        ChatPanelSteps.getQuestionInputElement().should('be.disabled');
+        ChatPanelSteps.getQuestionInputElement().should('have.attr', 'disabled');
 
         // Then I expect the "Ask" button be not active because agent is not selected
         ChatPanelSteps.getAskButtonElement().should('not.be.enabled');
@@ -54,7 +54,8 @@ describe('Ttyg ChatPanel', () => {
         // When I type a question
         ChatPanelSteps.getQuestionInputElement()
             .should('be.visible')
-            .and('not.be.disabled')
+            .and('not.have.attr', 'disabled');
+        ChatPanelSteps.getQuestionInputElement()
             .type('Who is Han Solo?');
 
         // Then I expect the "Ask" button be active.
@@ -68,13 +69,22 @@ describe('Ttyg ChatPanel', () => {
         ChatPanelSteps.getChatDetailsElements().should('have.length', 3);
         ChatPanelSteps.getChatDetailQuestionElement(2).contains('Who is Han Solo?');
         // and input field be empty,
-        ChatPanelSteps.getQuestionInputElement().should('be.enabled');
+        ChatPanelSteps.getQuestionInputElement().should('not.have.attr', 'disabled');
         ChatPanelSteps.getQuestionInputElement().should('have.value', '');
         // and "Ask" button be disabled.
         ChatPanelSteps.getAskButtonElement().should('be.disabled');
         // and only the actions for the last message are visible.
         ChatPanelSteps.getChatDetailActions(2, 0).should('not.be.visible');
         ChatPanelSteps.getChatDetailActions(2, 1).should('be.visible');
+        // When: I hover over the token usage info button
+        TTYGViewSteps.hoverTokenUsageInfoButton(0);
+        // Then: I expect the token usage info popover to be displayed.
+        TTYGViewSteps.getTokenUsageInfoPopover()
+            .should("exist")
+            .and('contain', '10,246')
+            .and('contain', 'prompt tokens')
+            .and('contain', '82')
+            .and('contain', 'completion tokens');
 
         // When I click on regenerate button on the last response => +2 messages
         TTYGStubs.stubAnswerQuestion();
@@ -164,6 +174,22 @@ describe('Ttyg ChatPanel', () => {
         TTYGViewSteps.getExplainQueryQueryElement(1, 2).contains("PREFIX rdfs: <http://www.w3.org/2000/01/rdf-sch");
     });
 
+    it('Should display info about used tokens for response', () => {
+        // Given: I visit the TTYG page, a chat with two questions and answers is loaded.
+        // Wait to chat be loaded
+        ChatPanelSteps.getChatDetailsElements().should('have.length', 2);
+
+        // When: I hover over the token usage info button
+        TTYGViewSteps.hoverTokenUsageInfoButton(0);
+        // Then: I expect the token usage info popover to be displayed.
+        TTYGViewSteps.getTokenUsageInfoPopover()
+            .should("exist")
+            .and('contain', '10,245')
+            .and('contain', 'prompt tokens')
+            .and('contain', '81')
+            .and('contain', 'completion tokens');
+    });
+
     // Can't test this on CI
     it.skip('Should copy an answer when click on copy button', () => {
         // When I click on copy button

package/integration/ttyg/create-chat.spec.js

@@ -38,9 +38,11 @@ describe('TTYG create chat', () => {
         // When I type a question
         ChatPanelSteps.getQuestionInputElement()
             .should('be.visible')
-            .and('not.be.disabled')
+            .and('not.have.attr', 'disabled');
+        ChatPanelSteps.getQuestionInputElement()
             .type('Who is Han Solo?');
 
+
         // Then I expect the "Ask" button be active.
         ChatPanelSteps.getAskButtonElement().should('be.enabled');
 

package/integration/ttyg/edit-agent.spec.js

@@ -4,6 +4,8 @@ import {TTYGStubs} from "../../stubs/ttyg/ttyg-stubs";
 import {TtygAgentSettingsModalSteps} from "../../steps/ttyg/ttyg-agent-settings-modal.steps";
 import {ToasterSteps} from "../../steps/toaster-steps";
 import {RepositoriesStub} from "../../stubs/repositories-stub";
+import {AutocompleteStubs} from "../../stubs/autocomplete/autocomplete-stubs";
+import {ModalDialogSteps} from "../../steps/modal-dialog-steps";
 
 describe('TTYG edit an agent', () => {
     const repositoryId = 'starwars';
@@ -52,14 +54,13 @@ describe('TTYG edit an agent', () => {
     });
 
 
-    it.skip('should be able to edit Autocomplete extraction method option', {
+    it('should be able to edit Autocomplete extraction method option', {
         retries: {
             runMode: 1,
             openMode: 0
         }
     }, () => {
         TTYGStubs.stubAgentListGet('/ttyg/agent/get-agent-list-autocomplete-query.json');
-        TTYGStubs.stubAutocompleteResponse();
         // Given I have opened the ttyg page
         TTYGViewSteps.visit();
         cy.wait('@get-agent-list');
@@ -78,11 +79,6 @@ describe('TTYG edit an agent', () => {
         // Then I can set a value for the max results
         TtygAgentSettingsModalSteps.setAutocompleteMaxResults(2);
 
-        // Then I can select predicates with the autocomplete
-        TtygAgentSettingsModalSteps.enterSearchPredicate('rest');
-        cy.wait('@autocomplete-suggestions');
-        TtygAgentSettingsModalSteps.selectAutocompleteOption(3);
-
         // When I save the agent
         TTYGStubs.stubAgentEdit();
         TtygAgentSettingsModalSteps.saveAgent();
@@ -93,7 +89,21 @@ describe('TTYG edit an agent', () => {
         TtygAgentSettingsModalSteps.getAutocompleteSearchCheckbox().should('be.checked');
         TtygAgentSettingsModalSteps.toggleAutocompleteSearchPanel();
         TtygAgentSettingsModalSteps.getAutocompleteMaxResults().should('have.value', '2');
-        TtygAgentSettingsModalSteps.getSearchPredicateTags().should('have.length', '1');
-        TtygAgentSettingsModalSteps.getSearchPredicateTags().should('contain.text', 'http://www.w3.org/1999/02/22-rdf-syntax-ns#rest');
+
+        // When: I select a repository with disabled autocomplete
+        AutocompleteStubs.stubAutocompleteEnabled(false);
+        TtygAgentSettingsModalSteps.selectRepository('biomarkers');
+        // Then: I expect to see a disabled message
+        TtygAgentSettingsModalSteps.getAutocompleteDisabledMessage().should('be.visible');
+
+        // When: I click on the link to enable autocomplete
+        TtygAgentSettingsModalSteps.clickOnEnableFTSSearch();
+        // Then: I expect a confirmation dialog displayed.
+        ModalDialogSteps.getDialogBody().contains('If you proceed with enabling the autocomplete index, GraphDB will open in a new tab and switch to the biomarkers repository.');
+
+        // When: I don't confirm the dialog
+        ModalDialogSteps.cancelDialogWithBody('If you proceed with enabling the autocomplete index, GraphDB will open in a new tab and switch to the biomarkers repository.');
+        // Then: I expect the dialog be disappeared and the disabled message still visible
+        TtygAgentSettingsModalSteps.getAutocompleteDisabledMessage().should('be.visible');
     });
 });

package/npm-shrinkwrap.json

@@ -1,12 +1,12 @@
 {
     "name": "graphdb-workbench-tests",
-    "version": "3.0.1",
+    "version": "3.1.0-TR1",
     "lockfileVersion": 3,
     "requires": true,
     "packages": {
         "": {
             "name": "graphdb-workbench-tests",
-            "version": "3.0.1",
+            "version": "3.1.0-TR1",
             "license": "Apache-2.0",
             "devDependencies": {
                 "cypress": "^14.0.3",

package/package.json

@@ -1,6 +1,6 @@
 {
     "name": "graphdb-workbench-tests",
-    "version": "3.0.1",
+    "version": "3.1.0-TR1",
     "description": "Cypress tests for GraphDB workbench",
     "scripts": {
         "prepack": "npm shrinkwrap",

package/steps/modal-dialog-steps.js

@@ -63,6 +63,26 @@ export class ModalDialogSteps {
         ModalDialogSteps.getCancelButton().click();
     }
 
+    /**
+     * Get the dialog with the given body. This method is useful when there are multiple dialogs on the page.
+     *
+     * @param body - the full or partial text of the dialog body.
+     *
+     * @return {Cypress.Chainable<JQuery<HTMLElement>>}
+     */
+    static getDialogWithBody(body) {
+        return ModalDialogSteps.getDialog().contains(body).parent().parent();
+    }
+
+    /**
+     * Click on the confirmation button of the dialog with the given body. This method is useful when there are multiple dialogs on the page.
+     *
+     * @param body - the full or partial text of the dialog body.
+     */
+    static cancelDialogWithBody(body) {
+        ModalDialogSteps.getDialogWithBody(body).find('.cancel-btn').click();
+    }
+
     static verifyUrlChangedConfirmation(verifyConfirmationDialogOptions = new VerifyConfirmationDialogOptions()) {
         // and try to change the page
         verifyConfirmationDialogOptions.changePageFunction();

package/steps/setup/autocomplete-steps.js

@@ -57,11 +57,42 @@ export class AutocompleteSteps {
         return this.getAutocompletePage().find('#wb-autocomplete-addLabel');
     }
 
+    static addLabelAndLanguage(label, language) {
+        this.getAddLabelButton().click();
+        this.typeLabelIri(label);
+        this.typeLabelLanguages(language);
+        this.saveLabel();
+    }
+
+    static typeLabelIri(iri) {
+        this.getAddLabelForm().find('#wb-autocomplete-iri').click().clear().type(iri);
+    }
+
+    static typeLabelLanguages(languages) {
+        this.getAddLabelForm().find('#wb-autocomplete-languages').click().type(languages);
+    }
+
     static getAutocompleteLabels() {
         return this.getAutocompletePage().find('#wb-autocomplete-labels');
     }
 
+    static getTableRows() {
+        return cy.get('.wb-autocomplete-labels-row');
+    }
+
     static getSuccessStatusElement() {
         return cy.get('.autocomplete-status').find('.tag.tag-success.ng-binding');
     }
+
+    static getAddLabelForm() {
+        return cy.get('#addLabelForm');
+    }
+
+    static saveLabel() {
+        cy.get('#wb-autocomplete-savegraph-submit').click();
+    }
+
+    static editLabelOnRow(rowIndex) {
+        this.getTableRows().eq(rowIndex).find('.actions-bar .icon-edit').click();
+    }
 }

package/steps/setup/namespace-steps.js

@@ -165,7 +165,7 @@ export class NamespaceSteps {
     }
 
     static typeInlineNamespacePrefix(index, prefix) {
-        this.getInlineNamespacePrefix(index).clear().type(prefix);
+        this.getInlineNamespacePrefix(index).click().clear().type(prefix);
     }
 
     static getInlineNamespaceValue(index) {

package/steps/ttyg/chat-panel-steps.js

@@ -17,7 +17,7 @@ export class ChatPanelSteps {
     }
 
     static getQuestionInputElement() {
-        return ChatPanelSteps.getChatPanel().find('.question-input');
+        return ChatPanelSteps.getChatPanel().find('.question-input .contenteditable');
     }
 
     static getAskButtonElement() {

package/steps/ttyg/ttyg-agent-settings-modal.steps.js

@@ -432,18 +432,6 @@ export class TtygAgentSettingsModalSteps extends ModalDialogSteps {
         this.getAutocompleteMaxResults().type(number);
     }
 
-    static getSearchPredicateInput() {
-        return cy.get('#autocompletePredicateField');
-    }
-
-    static enterSearchPredicate(text) {
-        this.getSearchPredicateInput().type(text);
-    }
-
-    static getSearchPredicateTags() {
-        return this.getSearchPredicateInput().find('.tag-item');
-    }
-
     static toggleAutocompleteSearchPanel() {
         cy.get('.extraction-method-toggle .panel-toggle-link .toggle-icon').click();
     }
@@ -456,6 +444,14 @@ export class TtygAgentSettingsModalSteps extends ModalDialogSteps {
         this.getSuggestionsList().eq(index).click();
     }
 
+    static getAutocompleteDisabledMessage() {
+        return cy.get('.autocomplete-disabled-message');
+    }
+
+    static clickOnEnableFTSSearch() {
+        this.getAutocompleteDisabledMessage().find('a').click();
+    }
+
     // System instructions
 
     static getSystemInstructionsFormGroup() {

package/steps/ttyg/ttyg-view-steps.js

@@ -221,14 +221,31 @@ export class TTYGViewSteps {
         this.getOpenAgentActionsButton(index).click();
     }
 
+    static triggerEditAgentActionMenu(index) {
+        this.openAgentActionMenu(index);
+        this.getEditAgentButton(index).click();
+    }
+
+    static getEditAgentButton(index) {
+        return this.getAgent(index).find('.agent-actions-menu .edit-agent-btn');
+    }
+
     static triggerCloneAgentActionMenu(index) {
         this.openAgentActionMenu(index);
-        this.getAgent(index).find('.agent-actions-menu .clone-agent-btn').click();
+        this.getCloneAgentButton(index).click();
+    }
+
+    static getCloneAgentButton(index) {
+        return this.getAgent(index).find('.agent-actions-menu .clone-agent-btn');
     }
 
     static triggerDeleteAgentActionMenu(index) {
         this.openAgentActionMenu(index);
-        this.getAgent(index).find('.agent-actions-menu .delete-agent-btn').click();
+        this.getDeleteAgentButton(index).click();
+    }
+
+    static getDeleteAgentButton(index) {
+        return this.getAgent(index).find('.agent-actions-menu .delete-agent-btn');
     }
 
     static getAgentDeletingLoader() {
@@ -254,6 +271,10 @@ export class TTYGViewSteps {
         return this.getTtygView().find('.agent-select-menu');
     }
 
+    static getAgentsDropdownMenu() {
+        return this.getAgentsMenu().find('.dropdown-menu');
+    }
+
     static getAgentsMenuToggleButton() {
         return this.getAgentsMenu().find('.dropdown-toggle-btn');
     }
@@ -263,7 +284,7 @@ export class TTYGViewSteps {
     }
 
     static getAgentsFromMenu() {
-        return this.getAgentsMenu().find('.agent-menu-item');
+        return this.getAgentsMenu().find('.agent-menu-item a');
     }
 
     static getAgentFromMenu(index) {
@@ -295,6 +316,18 @@ export class TTYGViewSteps {
         this.getExplainResponseButton(index).click();
     }
 
+    static getTokenUsageInfoButton(index) {
+        return this.getTtygView().find('.token-usage-info-btn').eq(index);
+    }
+
+    static hoverTokenUsageInfoButton(index) {
+        return this.getTokenUsageInfoButton(index).realHover();
+    }
+
+    static getTokenUsageInfoPopover() {
+        return cy.get('.token-usage-info');
+    }
+
     static getHowDeliverAnswerButton() {
         return this.getTtygView().find('.deliver-answer-btn');
     }

package/stubs/autocomplete/autocomplete-stubs.js

@@ -4,4 +4,11 @@ export class AutocompleteStubs extends Stubs {
     static spyAutocompleteStatus() {
         cy.intercept('GET', '/rest/autocomplete/enabled').as('autocompleteStatus');
     }
+
+    static stubAutocompleteEnabled(enabled = true) {
+        cy.intercept('GET', '/rest/autocomplete/enabled', {
+            statusCode: 200,
+            body: enabled
+        }).as('autocomplete-status');
+    }
 }

package/stubs/ttyg/ttyg-stubs.js

@@ -86,6 +86,10 @@ export class TTYGStubs extends Stubs {
         }).as('get-agent-list');
     }
 
+    static stubAgentListWithIncompatibleGet(delay = 0) {
+        this.stubAgentListGet('/ttyg/agent/get-agent-list-with-incompatible-agents.json');
+    }
+
     static stubAgentGet(fixture = '/ttyg/agent/get-agent.json', delay = 0) {
         cy.intercept('GET', '/rest/chat/agents/*', {
             fixture: fixture,
@@ -163,11 +167,4 @@ export class TTYGStubs extends Stubs {
             statusCode: 200
         }).as('explain-response');
     }
-
-    static stubAutocompleteResponse(fixture = '/ttyg/autocomplete-response.json') {
-        cy.intercept('GET', '/rest/autocomplete/query?*', {
-            fixture,
-            statusCode: 200,
-        }).as('autocomplete-suggestions');
-    }
 }

package/support/sparql-commands.js

@@ -1,3 +1,5 @@
+const DELETE_SAVED_QUERY_URL = '/rest/sparql/saved-queries';
+
 Cypress.Commands.add('pasteQuery', (query) => {
     // Setting the textarea and the calling setValue seems to work
     // more reliably then other strategies (see history)
@@ -12,6 +14,24 @@ Cypress.Commands.add('executeQuery', () => {
     getLoader().should('not.exist');
 });
 
+Cypress.Commands.add('deleteSavedQuery', (savedQueryName, secured = false) => {
+    const url = DELETE_SAVED_QUERY_URL + '?name=' + savedQueryName;
+    let headers = {'Content-Type': 'application/json'};
+    if (secured) {
+        const authHeader = Cypress.env('adminToken');
+        headers = {...headers,
+            'Authorization': authHeader
+        }
+    }
+    return cy.request({
+        method: 'DELETE',
+        url: url,
+        headers,
+        // Prevent Cypress from failing the test on non-2xx status codes
+        failOnStatusCode: false
+    });
+});
+
 Cypress.Commands.add('verifyResultsPageLength', (resultLength) => {
     getResultsWrapper().should('be.visible');
     getTableResultRows()

package/fixtures/ttyg/autocomplete-response.json

@@ -1,154 +0,0 @@
-{
-    "suggestions": [
-        {
-            "type": "prefix",
-            "value": "rep",
-            "description": "PREFIX <b>re</b>p: &lt;http://www.openrdf.org/config/repository#&gt;"
-        },
-        {
-            "type": "uri",
-            "value": "http://www.w3.org/2006/vcard/ns#rev",
-            "description": "http://www.w3.org/2006/vcard/ns#<b>re</b>v"
-        },
-        {
-            "type": "uri",
-            "value": "https://swapi.co/resource/human/85",
-            "description": "<b>Re</b>y &lt;https://swapi.co/resource/human/85&gt;"
-        },
-        {
-            "type": "uri",
-            "value": "http://www.w3.org/1999/02/22-rdf-syntax-ns#rest",
-            "description": "http://www.w3.org/1999/02/22-rdf-syntax-ns#<b>re</b>st"
-        },
-        {
-            "type": "uri",
-            "value": "http://www.w3.org/ns/odrl/2/read",
-            "description": "http://www.w3.org/ns/odrl/2/<b>re</b>ad"
-        },
-        {
-            "type": "uri",
-            "value": "http://spinrdf.org/sp#regex",
-            "description": "http://spinrdf.org/sp#<b>re</b>gex"
-        },
-        {
-            "type": "uri",
-            "value": "http://www.w3.org/ns/shacl#result",
-            "description": "http://www.w3.org/ns/shacl#<b>re</b>sult"
-        },
-        {
-            "type": "uri",
-            "value": "http://www.w3.org/ns/earl#result",
-            "description": "http://www.w3.org/ns/earl#<b>re</b>sult"
-        },
-        {
-            "type": "uri",
-            "value": "http://www.w3.org/ns/odrl/2/remedy",
-            "description": "http://www.w3.org/ns/odrl/2/<b>re</b>medy"
-        },
-        {
-            "type": "uri",
-            "value": "http://www.opengis.net/def/function/geosparql/relate",
-            "description": "http://www.opengis.net/def/function/geosparql/<b>re</b>late"
-        },
-        {
-            "type": "uri",
-            "value": "http://www.w3.org/2006/vcard/ns#region",
-            "description": "http://www.w3.org/2006/vcard/ns#<b>re</b>gion"
-        },
-        {
-            "type": "uri",
-            "value": "http://www.w3.org/ns/dcat#record",
-            "description": "http://www.w3.org/ns/dcat#<b>re</b>cord"
-        },
-        {
-            "type": "uri",
-            "value": "http://www.w3.org/ns/hydra/core#returns",
-            "description": "http://www.w3.org/ns/hydra/core#<b>re</b>turns"
-        },
-        {
-            "type": "uri",
-            "value": "http://www.w3.org/2005/xpath-functions#replace",
-            "description": "http://www.w3.org/2005/xpath-functions#<b>re</b>place"
-        },
-        {
-            "type": "uri",
-            "value": "http://usefulinc.com/ns/doap#release",
-            "description": "http://usefulinc.com/ns/doap#<b>re</b>lease"
-        },
-        {
-            "type": "uri",
-            "value": "http://www.w3.org/2004/02/skos/core#related",
-            "description": "http://www.w3.org/2004/02/skos/core#<b>re</b>lated"
-        },
-        {
-            "type": "uri",
-            "value": "http://spinrdf.org/sp#reduced",
-            "description": "http://spinrdf.org/sp#<b>re</b>duced"
-        },
-        {
-            "type": "uri",
-            "value": "http://www.w3.org/ns/odrl/2/Request",
-            "description": "http://www.w3.org/ns/odrl/2/<b>Re</b>quest"
-        },
-        {
-            "type": "uri",
-            "value": "https://swapi.co/vocabulary/Reptile",
-            "description": "https://swapi.co/vocabulary/<b>Re</b>ptile"
-        },
-        {
-            "type": "uri",
-            "value": "http://www.w3.org/ns/prov#Replace",
-            "description": "http://www.w3.org/ns/prov#<b>Re</b>place"
-        },
-        {
-            "type": "uri",
-            "value": "http://www.w3.org/ns/prov#Removal",
-            "description": "http://www.w3.org/ns/prov#<b>Re</b>moval"
-        },
-        {
-            "type": "uri",
-            "value": "http://usefulinc.com/ns/doap#revision",
-            "description": "http://usefulinc.com/ns/doap#<b>re</b>vision"
-        },
-        {
-            "type": "uri",
-            "value": "https://swapi.co/vocabulary/resident",
-            "description": "https://swapi.co/vocabulary/<b>re</b>sident"
-        },
-        {
-            "type": "uri",
-            "value": "http://purl.org/dc/terms/requires",
-            "description": "http://purl.org/dc/terms/<b>re</b>quires"
-        },
-        {
-            "type": "uri",
-            "value": "http://www.w3.org/ns/hydra/core#required",
-            "description": "http://www.w3.org/ns/hydra/core#<b>re</b>quired"
-        },
-        {
-            "type": "uri",
-            "value": "http://purl.org/dc/terms/replaces",
-            "description": "http://purl.org/dc/terms/<b>re</b>places"
-        },
-        {
-            "type": "uri",
-            "value": "http://www.w3.org/ns/odrl/2/relation",
-            "description": "http://www.w3.org/ns/odrl/2/<b>re</b>lation"
-        },
-        {
-            "type": "uri",
-            "value": "http://purl.org/dc/terms/relation",
-            "description": "http://purl.org/dc/terms/<b>re</b>lation"
-        },
-        {
-            "type": "uri",
-            "value": "http://purl.org/dc/elements/1.1/relation",
-            "description": "http://purl.org/dc/elements/1.1/<b>re</b>lation"
-        },
-        {
-            "type": "uri",
-            "value": "http://www.w3.org/ns/hydra/core#readable",
-            "description": "http://www.w3.org/ns/hydra/core#<b>re</b>adable"
-        }
-    ]
-}