gramene-search 2.4.0 → 2.5.1

package/dist/index.js

@@ -1624,7 +1624,8 @@ const $24971af0a229e0e3$var$grameneViews = {
             'list',
             'export',
             'exprViz',
-            'ontologyEnrichment'
+            'ontologyEnrichment',
+            'userLists'
         ]);
         const autoDisable = numFound === 0 || !hasFilters;
         const hasFirebase = !!(config && config.firebaseConfig);
@@ -7447,12 +7448,13 @@ const $047461923b1badda$export$964d88edb00bbcaa = (suggestion)=>{
 const $64fad37f770d2bfe$var$genomeZone = (0, $gXNCa$tbrowse.createGenomeZone)({
     id: 'genome'
 });
-const $64fad37f770d2bfe$var$TBROWSE_ZONES = [
+// The genome (gene-structure) zone is gated behind the site-config flag
+// `enable_tbrowse_genome_zone` (defaults to false) — see getTbrowseZones().
+const $64fad37f770d2bfe$var$TBROWSE_BASE_ZONES = [
     (0, $gXNCa$tbrowse.treeZone),
     (0, $gXNCa$tbrowse.labelsZone),
     (0, $gXNCa$tbrowse.msaZone),
-    (0, $gXNCa$tbrowse.neighborhoodZone),
-    $64fad37f770d2bfe$var$genomeZone
+    (0, $gXNCa$tbrowse.neighborhoodZone)
 ];
 class $64fad37f770d2bfe$var$Homology extends (0, ($parcel$interopDefault($gXNCa$react))).Component {
     constructor(props){
@@ -7485,7 +7487,18 @@ class $64fad37f770d2bfe$var$Homology extends (0, ($parcel$interopDefault($gXNCa$
         return slice && slice.homology || {};
     }
     getViewer() {
-        return this.getHomologySlice().viewer || 'treevis';
+        return this.getHomologySlice().viewer || 'tbrowse';
+    }
+    // The genome (gene-structure) zone is opt-in per site via
+    // `enable_tbrowse_genome_zone` (defaults to false).
+    isGenomeZoneEnabled() {
+        return !!(this.props.configuration && this.props.configuration.enable_tbrowse_genome_zone);
+    }
+    getTbrowseZones() {
+        return this.isGenomeZoneEnabled() ? [
+            ...$64fad37f770d2bfe$var$TBROWSE_BASE_ZONES,
+            $64fad37f770d2bfe$var$genomeZone
+        ] : $64fad37f770d2bfe$var$TBROWSE_BASE_ZONES;
     }
     getHeight() {
         const h = this.getHomologySlice().height;
@@ -7542,7 +7555,7 @@ class $64fad37f770d2bfe$var$Homology extends (0, ($parcel$interopDefault($gXNCa$
             // logic — zones default to visible unless their definition opts out
             // (e.g. neighborhood and genome opt out so they only appear once
             // their async data lands; tbrowse's Layout auto-flips them on then).
-            zones: $64fad37f770d2bfe$var$TBROWSE_ZONES.map((z)=>({
+            zones: this.getTbrowseZones().map((z)=>({
                     id: z.id,
                     width: z.defaultWidth,
                     visible: z.defaultVisible ?? true
@@ -7583,7 +7596,8 @@ class $64fad37f770d2bfe$var$Homology extends (0, ($parcel$interopDefault($gXNCa$
             ]);
         }
         this.fetchNeighborhood(treeId);
-        this.fetchGeneStructures(treeId, this._tbrowseData.tree);
+        // Only pay for gene-structure data when the genome zone is actually enabled.
+        if (this.isGenomeZoneEnabled()) this.fetchGeneStructures(treeId, this._tbrowseData.tree);
     }
     fetchNeighborhood(treeId) {
         if (this._neighborhoodFetchedFor === treeId) return;
@@ -7754,7 +7768,7 @@ class $64fad37f770d2bfe$var$Homology extends (0, ($parcel$interopDefault($gXNCa$
                         exonJunctions: this._tbrowseData.exonJunctions,
                         neighborhood: neighborhood,
                         geneStructures: geneStructures,
-                        zones: $64fad37f770d2bfe$var$TBROWSE_ZONES,
+                        zones: this.getTbrowseZones(),
                         nodeOfInterest: this.gene._id,
                         viewState: tbrowseVS,
                         onViewStateChange: (next)=>this.setTbrowseViewState(next),
@@ -7791,8 +7805,8 @@ class $64fad37f770d2bfe$var$Homology extends (0, ($parcel$interopDefault($gXNCa$
                 margin: '8px 0'
             },
             children: [
-                btn('treevis', 'TreeVis'),
-                btn('tbrowse', 'TBrowse (beta)')
+                btn('tbrowse', 'TBrowse'),
+                btn('treevis', 'TreeVis')
             ]
         });
     }