gramene-search 2.17.0 → 2.18.0

package/dist/index.js

@@ -7422,18 +7422,33 @@ function $541b8b0d8c5501d2$var$logAction(sugg) {
         label: sugg.name
     });
 }
+// The species label under a suggestion. Returns '' rather than throwing when the
+// taxonomy can't explain a taxon: this runs during render, so anything thrown here
+// takes down the whole suggestions panel and the search box looks broken.
+//
+// That is not hypothetical. `grameneTaxonomy` is persisted with a 24h staleAfter, so
+// after a data release adds genomes — v11 added 4558118/4558119/4558120 — every
+// browser still holding the previous release's taxonomy has suggestions referencing
+// taxa it has never heard of. Broad queries ("kinase", "sb") hit all three.
 function $541b8b0d8c5501d2$var$getLowestCommonAncestorName(tids, taxonomy) {
+    if (!Array.isArray(tids) || !taxonomy) return '';
     let lca;
     tids.forEach((tid)=>{
+        const node = taxonomy[tid];
+        if (!node || !Array.isArray(node.ancestors)) return; // unknown taxon: ignore it
         if (!lca) lca = [
-            ...taxonomy[tid].ancestors
+            ...node.ancestors
         ];
         else {
-            let ancestors = new Set(taxonomy[tid].ancestors);
-            while(!ancestors.has(lca[0]))lca.shift();
+            let ancestors = new Set(node.ancestors);
+            // `lca.length &&` matters: with no ancestor in common this shifted an empty
+            // array forever, since ancestors.has(undefined) is never true.
+            while(lca.length && !ancestors.has(lca[0]))lca.shift();
         }
     });
-    return taxonomy[lca[0]].short_name;
+    if (!lca || !lca.length) return '';
+    const root = taxonomy[lca[0]];
+    return root ? root.short_name : '';
 }
 const $541b8b0d8c5501d2$var$TryPan = (props)=>{
     const query = props.query;
@@ -8999,6 +9014,7 @@ class $64fad37f770d2bfe$var$Homology extends (0, ($parcel$interopDefault($gXNCa$
                         nodeOfInterest: this.gene._id,
                         viewState: effectiveVS,
                         onViewStateChange: onViewStateChange,
+                        densityControls: true,
                         defaultOpenSections: {
                             zones: true,
                             search: true
@@ -20030,6 +20046,7 @@ const $15504f5eba8e73bd$var$TaxDistTbrowse = (props)=>{
                 showHeader: true,
                 rowHeight: 14,
                 fontSize: 10,
+                densityControls: true,
                 autoHeight: true,
                 defaultOpenSections: {
                     search: true,