gramene-search 2.1.11 → 2.2.0

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Files changed (35) hide show
  1. package/.claude/launch.json +11 -0
  2. package/.claude/settings.local.json +6 -1
  3. package/.env.example +6 -0
  4. package/.parcel-cache/13f2d5707e7af45c-RequestGraph +0 -0
  5. package/.parcel-cache/5ae0570a78c0dba3-AssetGraph +0 -0
  6. package/.parcel-cache/9ac092379278e465-BundleGraph +0 -0
  7. package/.parcel-cache/data.mdb +0 -0
  8. package/.parcel-cache/lock.mdb +0 -0
  9. package/.parcel-cache/snapshot-13f2d5707e7af45c.txt +2 -2
  10. package/dist/index.js +2065 -154
  11. package/dist/index.js.map +1 -1
  12. package/package.json +5 -2
  13. package/src/bundles/api.js +10 -4
  14. package/src/bundles/exprViz.js +97 -1
  15. package/src/bundles/index.js +4 -1
  16. package/src/bundles/ontologyEnrichment.js +14 -1
  17. package/src/bundles/savedViews.js +335 -0
  18. package/src/bundles/uiViewState.js +174 -0
  19. package/src/bundles/viewSnapshot.js +313 -0
  20. package/src/bundles/views.js +22 -0
  21. package/src/components/Auth.js +23 -3
  22. package/src/components/SaveView.js +157 -0
  23. package/src/components/exprViz/ExprVizView.js +16 -11
  24. package/src/components/exprViz/ParallelCoordsPlot.js +15 -0
  25. package/src/components/results/GeneList.js +45 -15
  26. package/src/components/results/OntologyEnrichment.js +13 -6
  27. package/src/components/results/details/BAR.js +148 -0
  28. package/src/components/results/details/Expression.js +43 -11
  29. package/src/components/results/details/Homology.js +170 -32
  30. package/src/components/results/details/Pathways.js +4 -2
  31. package/src/components/results/details/Sequences.js +24 -8
  32. package/src/demo.js +22 -17
  33. package/src/index.js +2 -1
  34. package/src/suppressDevWarnings.js +13 -0
  35. package/src/utils/bootView.js +38 -0
package/.claude/launch.json ADDED
@@ -0,0 +1,11 @@
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+ {
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+ "version": "0.0.1",
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+ "configurations": [
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+ {
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+ "name": "gramene-sorghum",
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+ "runtimeExecutable": "npm",
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+ "runtimeArgs": ["run", "start-sorghum"],
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+ "port": 1234
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+ }
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+ ]
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+ }
package/.claude/settings.local.json CHANGED
@@ -82,7 +82,12 @@
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  "Bash(git -C /Users/olson/src/warelab/gramene-search apply /tmp/demo-firebase.patch)",
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  "Bash(git -C /Users/olson/src/warelab/gramene-search add src/bundles/views.js src/demo.js)",
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  "Bash(git -C /Users/olson/src/warelab/gramene-search log --oneline -3)",
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- "Bash(git -C /Users/olson/src/warelab/gramene-search status --short)"
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+ "Bash(git -C /Users/olson/src/warelab/gramene-search status --short)",
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+ "Bash(grep '\"version\"' /Users/olson/src/warelab/tbrowse/package.json)",
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+ "mcp__Claude_Preview__preview_start",
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+ "Bash(xargs kill -9)",
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+ "Bash(pkill -9 -f \"parcel src/sorghum.html\")",
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+ "Bash(grep -E \"\\\\.\\(js|jsx\\)$\")"
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  ]
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  }
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  }
package/.env.example ADDED
@@ -0,0 +1,6 @@
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+ # Firebase web SDK config for the Auth panel (gramene-auth project).
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+ # Parcel inlines process.env.* at build time. Copy this to `.env` (which is
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+ # gitignored) and fill in the value from 1Password / shared credentials.
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+ #
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+ # If FIREBASE_CONFIG_JSON is unset, the Auth panel stays inert.
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+ FIREBASE_CONFIG_JSON={"apiKey":"...","authDomain":"gramene-auth.firebaseapp.com","projectId":"gramene-auth","storageBucket":"gramene-auth.appspot.com","messagingSenderId":"...","appId":"..."}
package/.parcel-cache/data.mdb CHANGED
Binary file
package/.parcel-cache/lock.mdb CHANGED
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package/.parcel-cache/snapshot-13f2d5707e7af45c.txt CHANGED
@@ -1,2 +1,2 @@
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- 350770407
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- 1779984721280195000
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+ 369076071
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+ 1780410393396873000