gramene-search 2.0.5 → 2.0.7
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/.claude/settings.local.json +1 -1
- package/.parcel-cache/83e7562660f7cc15-BundleGraph +0 -0
- package/.parcel-cache/d3a1b9507cb44047-AssetGraph +0 -0
- package/.parcel-cache/data.mdb +0 -0
- package/.parcel-cache/dc1da35000e13623-RequestGraph +0 -0
- package/.parcel-cache/lock.mdb +0 -0
- package/.parcel-cache/snapshot-dc1da35000e13623.txt +2 -2
- package/dist/index.css +176 -0
- package/dist/index.css.map +1 -1
- package/dist/index.js +2354 -817
- package/dist/index.js.map +1 -1
- package/package.json +1 -1
- package/src/bundles/docs.js +42 -15
- package/src/bundles/gsea.js +568 -0
- package/src/bundles/index.js +2 -1
- package/src/bundles/ontologies.js +52 -60
- package/src/bundles/swaggerFields.js +5 -6
- package/src/bundles/views.js +7 -1
- package/src/components/exporter/expressionResolver.js +2 -2
- package/src/components/exprViz/ExprTable.js +13 -2
- package/src/components/exprViz/ExprVizView.js +43 -5
- package/src/components/geneSearchUI.js +2 -0
- package/src/components/results/GSEA.js +618 -0
- package/src/components/results/HelpDemo.js +30 -0
- package/src/components/results/gsea.css +177 -0
- package/src/fieldCatalog.overlay.json +1 -1
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.gsea-view {
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padding: 0.25rem 0.5rem;
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}
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.gsea-layout {
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display: flex;
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align-items: flex-start;
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gap: 0.75rem;
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}
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.gsea-layout-tree {
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max-height: 80vh;
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overflow: auto;
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border: 1px solid #e1e4e8;
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border-radius: 4px;
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padding: 0.25rem 0.5rem;
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background: #fafbfc;
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font-size: 13px;
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min-width: 0;
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}
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.gsea-splitter {
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flex: 0 0 6px;
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cursor: col-resize;
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background: transparent;
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border-left: 1px solid #e1e4e8;
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border-right: 1px solid #e1e4e8;
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margin: 0 1px;
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align-self: stretch;
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}
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.gsea-splitter:hover,
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.gsea-splitter:active {
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background: #d6e9ff;
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}
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.gsea-layout-panel {
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flex: 1 1 auto;
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min-width: 0;
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}
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.gsea-tree-leaf {
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display: flex;
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align-items: center;
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gap: 4px;
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padding: 2px 4px;
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cursor: pointer;
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border-radius: 2px;
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}
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.gsea-tree-leaf:hover {
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background: #eef5ff;
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}
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.gsea-tree-leaf-active {
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background: #d6e9ff !important;
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font-weight: 600;
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}
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.gsea-tree-leaf-name {
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flex: 1 1 auto;
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white-space: nowrap;
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overflow: hidden;
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text-overflow: ellipsis;
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}
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.gsea-tree-leaf-count {
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color: #555;
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font-size: 12px;
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font-variant-numeric: tabular-nums;
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}
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.gsea-loading {
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padding: 1rem;
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}
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.gsea-summary {
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font-size: 0.9rem;
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margin: 0.25rem 0 0.5rem 0;
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}
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.gsea-controls {
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display: flex;
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flex-wrap: wrap;
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gap: 0.75rem;
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align-items: end;
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margin-bottom: 0.5rem;
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padding: 0.5rem;
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background-color: #f6f8fa;
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border: 1px solid #e1e4e8;
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border-radius: 4px;
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}
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.gsea-control {
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min-width: 100px;
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}
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.gsea-control-grow {
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flex-grow: 1;
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min-width: 200px;
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}
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.gsea-control .form-label {
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font-size: 0.8rem;
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margin-bottom: 0.15rem;
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}
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.gsea-ont-title {
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font-weight: 600;
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margin-right: 0.5rem;
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}
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.gsea-ont-badge {
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font-weight: normal;
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}
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.gsea-table {
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width: 100%;
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border-collapse: collapse;
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font-size: 0.85rem;
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}
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.gsea-table th,
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.gsea-table td {
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padding: 0.25rem 0.5rem;
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border-bottom: 1px solid #eee;
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text-align: left;
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}
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.gsea-table th {
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background: #f0f3f6;
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position: sticky;
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top: 0;
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}
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.gsea-sort-th {
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cursor: pointer;
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user-select: none;
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white-space: nowrap;
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}
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.gsea-sort-th:hover {
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background: #dde3ea;
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}
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.gsea-sort-th-active {
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background: #dde3ea;
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color: #003366;
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}
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.gsea-table tbody tr {
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cursor: pointer;
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}
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.gsea-table tbody tr:hover {
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background-color: #eef5ff;
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}
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.gsea-num {
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text-align: right !important;
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font-variant-numeric: tabular-nums;
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}
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.gsea-term-id {
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font-family: monospace;
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white-space: nowrap;
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}
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.gsea-term-name {
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max-width: 32rem;
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}
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.gsea-term-type {
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white-space: nowrap;
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color: #555;
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font-size: 0.8rem;
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}
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},
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{
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"id": "diffexpr",
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"match": "^(E[-_][A-Za-z0-9_-]+?)_g(\\d+)_g(\\d+)_(pval|
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"match": "^(E[-_][A-Za-z0-9_-]+?)_g(\\d+)_g(\\d+)_(pval|l2fc)_attr_([a-z])$",
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"group": "differential",
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"diffExpression": true,
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"labelTemplate": "$1 · g$2 vs g$3 · $4"
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