gramene-search 2.0.5 → 2.0.6

package/.parcel-cache/snapshot-dc1da35000e13623.txt

@@ -1,2 +1,2 @@
-316800798
-1777346326753367000
+316936686
+1777348108097495000

package/dist/index.js

@@ -2076,7 +2076,7 @@ var $0d54502f6cafe273$export$2e2bcd8739ae039 = $0d54502f6cafe273$var$grameneGeno
 
 
 var $65709bd8598fce20$exports = {};
-$65709bd8598fce20$exports = JSON.parse('{"groups":{"core":{"label":"Core identifiers","order":0},"location":{"label":"Genomic location","order":1},"structure":{"label":"Gene structure","order":2},"homology":{"label":"Homology","order":3},"expression":{"label":"Gene expression","order":4},"differential":{"label":"Differential expression","order":5},"hierarchical":{"label":"Hierarchical annotations","order":6},"pathways":{"label":"Pathways","order":7},"GO":{"label":"Gene Ontology","order":7},"PO":{"label":"Plant Ontology","order":8},"lof":{"label":"Loss of function alleles","order":9},"MAKER":{"label":"MAKER transcript metrics","order":10},"xrefs":{"label":"External references","order":11},"other":{"label":"Other","order":99}},"patterns":[{"id":"homology","match":"^homology__(.+)$","group":"homology","multiValued":true,"labelTemplate":"Homology: $1"},{"id":"pathways","match":"^pathways__(.+)$","group":"pathways","multiValued":true,"labelTemplate":"Pathway: $1"},{"id":"maker","match":"^MAKER__(.+)__attr_([a-z])$","group":"MAKER","labelTemplate":"MAKER: $1"},{"id":"xrefs","match":"^(.+)__xrefs$","group":"xrefs","multiValued":true,"labelTemplate":"$1 (xrefs)"},{"id":"expr","match":"^(E[-_][A-Za-z0-9_-]+?)_g(\\\\d+)__expr$","group":"expression","expression":true,"labelTemplate":"$1 \xb7 g$2"},{"id":"diffexpr","match":"^(E[-_][A-Za-z0-9_-]+?)_g(\\\\d+)_g(\\\\d+)_(pval|logfc|l2fc)_attr_([a-z])$","group":"differential","diffExpression":true,"labelTemplate":"$1 \xb7 g$2 vs g$3 \xb7 $4"},{"id":"bins","match":"^(fixed|uniform)_([0-9a-zA-Z]+)__bin$","group":"bins","is_hidden":true,"labelTemplate":"$1 bin ($2)"},{"id":"neighbors","match":".*neighbors_[0-9]+$","group":"neighbors","is_hidden":true,"labelTemplate":"neighbors"},{"id":"vep_merged","match":"^VEP__merged__(NAT|EMS)__attr_ss$","group":"lof","multiValued":true,"labelTemplate":"Merged $1 accessions"},{"id":"vep_detail","match":"^VEP__(.+?)__(homo|het)__(.+?)__(\\\\d+)__attr_ss$","group":"lof","multiValued":true,"labelTemplate":"$1 ($2) $3/$4"},{"id":"generic_attr","match":"^(.+)__attr_([a-z])$","group":"other","labelTemplate":"$1"}],"fields":{"id":{"group":"core","label":"Gene ID","order":1},"name":{"group":"core","label":"Name","order":2},"description":{"group":"core","label":"Description","order":4},"summary":{"group":"core","label":"Summary","order":5},"synonyms":{"group":"core","label":"Synonyms","multiValued":true,"order":3},"biotype":{"group":"core","label":"Biotype","order":6},"taxon_id":{"group":"core","label":"Taxon ID","order":8},"system_name":{"group":"core","label":"System name","order":7},"db_type":{"group":"core","label":"DB type","order":9},"closest_rep_id":{"group":"homology","label":"Closest representative ID","order":1},"closest_rep_name":{"group":"homology","label":"Closest representative name","order":2},"closest_rep_identity":{"group":"homology","label":"Closest representative identity","order":3},"closest_rep_taxon_id":{"group":"homology","label":"Closest representative taxon","order":4},"closest_rep_description":{"group":"homology","label":"Closest representative description","order":5},"model_rep_id":{"group":"homology","label":"Model representative ID","order":6},"model_rep_name":{"group":"homology","label":"Model representative name","order":7},"model_rep_identity":{"group":"homology","label":"Model representative identity","order":8},"model_rep_taxon_id":{"group":"homology","label":"Model representative taxon","order":9},"model_rep_description":{"group":"homology","label":"Model representative description","order":10},"gene_tree":{"group":"homology","label":"Gene tree ID","order":11},"pan_tree":{"group":"homology","label":"Pan-gene tree ID","order":14},"capabilities":{"group":"other","label":"Capabilities","multiValued":true},"map":{"group":"location","label":"Map","order":1},"region":{"group":"location","label":"Region","order":2},"start":{"group":"location","label":"Start","order":3},"end":{"group":"location","label":"End","order":4},"strand":{"group":"location","label":"Strand","order":5},"GO__ancestors":{"group":"hierarchical","label":"GO terms","multiValued":true,"order":1},"PO__ancestors":{"group":"hierarchical","label":"PO terms","multiValued":true,"order":2},"TO__ancestors":{"group":"hierarchical","label":"TO terms","multiValued":true,"order":3},"QTL_TO__ancestors":{"group":"hierarchical","label":"QTL traits (TO)","multiValued":true,"order":7},"domains__ancestors":{"group":"hierarchical","label":"Domains","multiValued":true,"order":4},"taxonomy__ancestors":{"group":"hierarchical","label":"Taxonomy","multiValued":true,"order":6},"supertree_attr_s":{"group":"homology","label":"Supertree","order":13},"gene_tree_root_taxon_id":{"group":"homology","label":"Gene tree root taxon","order":12},"protein__length":{"group":"structure","label":"Protein length"},"transcript__count":{"group":"structure","label":"Transcript count"},"transcript__exons":{"group":"structure","label":"Exon count"},"transcript__length":{"group":"structure","label":"Transcript length"},"expressed_in_gxa_attr_ss":{"group":"expression","label":"Expressed in GXA","multiValued":true},"MAKER__AED__attr_f":{"group":"MAKER","label":"AED","description":"Annotation Edit Distance"},"MAKER__QI1__attr_i":{"group":"MAKER","label":"QI1: Length of the 5\' UTR"},"MAKER__QI2__attr_f":{"group":"MAKER","label":"QI2: Fraction of splice sites confirmed by EST"},"MAKER__QI3__attr_f":{"group":"MAKER","label":"QI3: Fraction of exons overlapping an EST"},"MAKER__QI4__attr_f":{"group":"MAKER","label":"QI4: Fraction of exons overlapping EST or protein"},"MAKER__QI5__attr_f":{"group":"MAKER","label":"QI5: Fraction of splice sites confirmed by SNAP"},"MAKER__QI6__attr_f":{"group":"MAKER","label":"QI6: Fraction of exons overlapping a SNAP"},"MAKER__QI7__attr_i":{"group":"MAKER","label":"QI7: Number of exons in the mRNA"},"MAKER__QI8__attr_i":{"group":"MAKER","label":"QI8: Length of the 3\' UTR"},"MAKER__QI9__attr_i":{"group":"MAKER","label":"QI9: Length of the protein sequence"},"homology__all_orthologs":{"group":"homology","label":"All orthologs","multiValued":true,"order":15},"homology__ortholog_one2one":{"group":"homology","label":"1:1 orthologs","multiValued":true,"order":16},"homology__ortholog_one2many":{"group":"homology","label":"1:many orthologs","multiValued":true,"order":17},"homology__ortholog_many2many":{"group":"homology","label":"Many:many orthologs","multiValued":true,"order":18},"homology__syntenic_ortholog_one2one":{"group":"homology","label":"Syntenic 1:1 orthologs","multiValued":true,"order":19},"homology__within_species_paralog":{"group":"homology","label":"Within-species paralogs","multiValued":true,"order":20},"pathways__ancestors":{"group":"hierarchical","label":"Pathways","multiValued":true,"order":5},"canonical_transcript__attr_s":{"group":"structure","label":"Canonical transcript ID"}},"hidden":["_version_","_terms","score","gene_idx","gene_idx_multi","species_idx","compara_idx","compara_idx_multi","_id","annotations","bins","gene_structure","homology","location","xrefs","domain_roots","familyRoot__ancestors","taxonomy__ancestors","capabilities","saved_search"]}');
+$65709bd8598fce20$exports = JSON.parse('{"groups":{"core":{"label":"Core identifiers","order":0},"location":{"label":"Genomic location","order":1},"structure":{"label":"Gene structure","order":2},"homology":{"label":"Homology","order":3},"expression":{"label":"Gene expression","order":4},"differential":{"label":"Differential expression","order":5},"hierarchical":{"label":"Hierarchical annotations","order":6},"pathways":{"label":"Pathways","order":7},"GO":{"label":"Gene Ontology","order":7},"PO":{"label":"Plant Ontology","order":8},"lof":{"label":"Loss of function alleles","order":9},"MAKER":{"label":"MAKER transcript metrics","order":10},"xrefs":{"label":"External references","order":11},"other":{"label":"Other","order":99}},"patterns":[{"id":"homology","match":"^homology__(.+)$","group":"homology","multiValued":true,"labelTemplate":"Homology: $1"},{"id":"pathways","match":"^pathways__(.+)$","group":"pathways","multiValued":true,"labelTemplate":"Pathway: $1"},{"id":"maker","match":"^MAKER__(.+)__attr_([a-z])$","group":"MAKER","labelTemplate":"MAKER: $1"},{"id":"xrefs","match":"^(.+)__xrefs$","group":"xrefs","multiValued":true,"labelTemplate":"$1 (xrefs)"},{"id":"expr","match":"^(E[-_][A-Za-z0-9_-]+?)_g(\\\\d+)__expr$","group":"expression","expression":true,"labelTemplate":"$1 \xb7 g$2"},{"id":"diffexpr","match":"^(E[-_][A-Za-z0-9_-]+?)_g(\\\\d+)_g(\\\\d+)_(pval|l2fc)_attr_([a-z])$","group":"differential","diffExpression":true,"labelTemplate":"$1 \xb7 g$2 vs g$3 \xb7 $4"},{"id":"bins","match":"^(fixed|uniform)_([0-9a-zA-Z]+)__bin$","group":"bins","is_hidden":true,"labelTemplate":"$1 bin ($2)"},{"id":"neighbors","match":".*neighbors_[0-9]+$","group":"neighbors","is_hidden":true,"labelTemplate":"neighbors"},{"id":"vep_merged","match":"^VEP__merged__(NAT|EMS)__attr_ss$","group":"lof","multiValued":true,"labelTemplate":"Merged $1 accessions"},{"id":"vep_detail","match":"^VEP__(.+?)__(homo|het)__(.+?)__(\\\\d+)__attr_ss$","group":"lof","multiValued":true,"labelTemplate":"$1 ($2) $3/$4"},{"id":"generic_attr","match":"^(.+)__attr_([a-z])$","group":"other","labelTemplate":"$1"}],"fields":{"id":{"group":"core","label":"Gene ID","order":1},"name":{"group":"core","label":"Name","order":2},"description":{"group":"core","label":"Description","order":4},"summary":{"group":"core","label":"Summary","order":5},"synonyms":{"group":"core","label":"Synonyms","multiValued":true,"order":3},"biotype":{"group":"core","label":"Biotype","order":6},"taxon_id":{"group":"core","label":"Taxon ID","order":8},"system_name":{"group":"core","label":"System name","order":7},"db_type":{"group":"core","label":"DB type","order":9},"closest_rep_id":{"group":"homology","label":"Closest representative ID","order":1},"closest_rep_name":{"group":"homology","label":"Closest representative name","order":2},"closest_rep_identity":{"group":"homology","label":"Closest representative identity","order":3},"closest_rep_taxon_id":{"group":"homology","label":"Closest representative taxon","order":4},"closest_rep_description":{"group":"homology","label":"Closest representative description","order":5},"model_rep_id":{"group":"homology","label":"Model representative ID","order":6},"model_rep_name":{"group":"homology","label":"Model representative name","order":7},"model_rep_identity":{"group":"homology","label":"Model representative identity","order":8},"model_rep_taxon_id":{"group":"homology","label":"Model representative taxon","order":9},"model_rep_description":{"group":"homology","label":"Model representative description","order":10},"gene_tree":{"group":"homology","label":"Gene tree ID","order":11},"pan_tree":{"group":"homology","label":"Pan-gene tree ID","order":14},"capabilities":{"group":"other","label":"Capabilities","multiValued":true},"map":{"group":"location","label":"Map","order":1},"region":{"group":"location","label":"Region","order":2},"start":{"group":"location","label":"Start","order":3},"end":{"group":"location","label":"End","order":4},"strand":{"group":"location","label":"Strand","order":5},"GO__ancestors":{"group":"hierarchical","label":"GO terms","multiValued":true,"order":1},"PO__ancestors":{"group":"hierarchical","label":"PO terms","multiValued":true,"order":2},"TO__ancestors":{"group":"hierarchical","label":"TO terms","multiValued":true,"order":3},"QTL_TO__ancestors":{"group":"hierarchical","label":"QTL traits (TO)","multiValued":true,"order":7},"domains__ancestors":{"group":"hierarchical","label":"Domains","multiValued":true,"order":4},"taxonomy__ancestors":{"group":"hierarchical","label":"Taxonomy","multiValued":true,"order":6},"supertree_attr_s":{"group":"homology","label":"Supertree","order":13},"gene_tree_root_taxon_id":{"group":"homology","label":"Gene tree root taxon","order":12},"protein__length":{"group":"structure","label":"Protein length"},"transcript__count":{"group":"structure","label":"Transcript count"},"transcript__exons":{"group":"structure","label":"Exon count"},"transcript__length":{"group":"structure","label":"Transcript length"},"expressed_in_gxa_attr_ss":{"group":"expression","label":"Expressed in GXA","multiValued":true},"MAKER__AED__attr_f":{"group":"MAKER","label":"AED","description":"Annotation Edit Distance"},"MAKER__QI1__attr_i":{"group":"MAKER","label":"QI1: Length of the 5\' UTR"},"MAKER__QI2__attr_f":{"group":"MAKER","label":"QI2: Fraction of splice sites confirmed by EST"},"MAKER__QI3__attr_f":{"group":"MAKER","label":"QI3: Fraction of exons overlapping an EST"},"MAKER__QI4__attr_f":{"group":"MAKER","label":"QI4: Fraction of exons overlapping EST or protein"},"MAKER__QI5__attr_f":{"group":"MAKER","label":"QI5: Fraction of splice sites confirmed by SNAP"},"MAKER__QI6__attr_f":{"group":"MAKER","label":"QI6: Fraction of exons overlapping a SNAP"},"MAKER__QI7__attr_i":{"group":"MAKER","label":"QI7: Number of exons in the mRNA"},"MAKER__QI8__attr_i":{"group":"MAKER","label":"QI8: Length of the 3\' UTR"},"MAKER__QI9__attr_i":{"group":"MAKER","label":"QI9: Length of the protein sequence"},"homology__all_orthologs":{"group":"homology","label":"All orthologs","multiValued":true,"order":15},"homology__ortholog_one2one":{"group":"homology","label":"1:1 orthologs","multiValued":true,"order":16},"homology__ortholog_one2many":{"group":"homology","label":"1:many orthologs","multiValued":true,"order":17},"homology__ortholog_many2many":{"group":"homology","label":"Many:many orthologs","multiValued":true,"order":18},"homology__syntenic_ortholog_one2one":{"group":"homology","label":"Syntenic 1:1 orthologs","multiValued":true,"order":19},"homology__within_species_paralog":{"group":"homology","label":"Within-species paralogs","multiValued":true,"order":20},"pathways__ancestors":{"group":"hierarchical","label":"Pathways","multiValued":true,"order":5},"canonical_transcript__attr_s":{"group":"structure","label":"Canonical transcript ID"}},"hidden":["_version_","_terms","score","gene_idx","gene_idx_multi","species_idx","compara_idx","compara_idx_multi","_id","annotations","bins","gene_structure","homology","location","xrefs","domain_roots","familyRoot__ancestors","taxonomy__ancestors","capabilities","saved_search"]}');
 
 
 const $49d5cbca2ec74b2f$export$428c2f647a2a7545 = {
@@ -2379,14 +2379,13 @@ function $0f839422d0d8c772$var$buildSpeciesNameIndex(grameneMaps) {
 function $0f839422d0d8c772$var$fieldExperimentId(name) {
     let m = name.match(/^(\w+?)_g\d+__expr$/);
     if (m) return m[1].replace(/_/g, '-');
-    m = name.match(/^(\w+?)_g\d+_g\d+_(pval|logfc|l2fc)_attr_[a-z]$/);
+    m = name.match(/^(\w+?)_g\d+_g\d+_(pval|l2fc)_attr_[a-z]$/);
     if (m) return m[1].replace(/_/g, '-');
     return null;
 }
 const $0f839422d0d8c772$var$STAT_RANK = {
     l2fc: 0,
-    logfc: 1,
-    pval: 2
+    pval: 1
 };
 function $0f839422d0d8c772$var$collapseDiffExprInSubgroups(subgroups, fieldsOut, collator) {
     for (const taxGroup of subgroups)for (const expGroup of taxGroup.subgroups || []){
@@ -2423,7 +2422,7 @@ function $0f839422d0d8c772$var$collapseDiffExprInSubgroups(subgroups, fieldsOut,
             });
             const rep = names[0];
             const repEntry = fieldsOut[rep];
-            const label = (repEntry.label || rep).replace(/\s+\((?:pval|logfc|l2fc)\)/, '');
+            const label = (repEntry.label || rep).replace(/\s+\((?:pval|l2fc)\)/, '');
             fieldsOut[rep] = {
                 ...repEntry,
                 label: label,
@@ -2726,15 +2725,12 @@ $0f839422d0d8c772$var$grameneFieldCatalog.selectFieldCatalog = (0, $gXNCa$reduxb
     const present = new Set(fieldNames);
     // Build a synthetic doc from the discovered field names; values carry the
     // right JS type so inferType picks the correct multiValued/type (arrays
-    // for multi-valued fields, scalars otherwise). Derive pval/logfc
-    // companions from every l2fc field.
+    // for multi-valued fields, scalars otherwise). Derive the pval companion
+    // from every l2fc field.
     const doc = {};
     for (const name of present){
         doc[name] = $0f839422d0d8c772$var$synthesizedValue(name);
-        if (/_l2fc_attr_f$/.test(name)) {
-            doc[name.replace('_l2fc_', '_pval_')] = 0;
-            doc[name.replace('_l2fc_', '_logfc_')] = 0;
-        }
+        if (/_l2fc_attr_f$/.test(name)) doc[name.replace('_l2fc_', '_pval_')] = 0;
     }
     const catalog = $0f839422d0d8c772$var$buildCatalog([
         doc
@@ -2749,7 +2745,7 @@ var $0f839422d0d8c772$export$2e2bcd8739ae039 = $0f839422d0d8c772$var$grameneFiel
 
 
 const $6d28e8e62a4d602f$var$EXPR_FIELD_RE = /^(E[-_][A-Za-z0-9_-]+?)_g(\d+)__expr$/;
-const $6d28e8e62a4d602f$var$DIFFEXPR_FIELD_RE = /^(E[-_][A-Za-z0-9_-]+?)_g(\d+)_g(\d+)_(pval|logfc|l2fc)_attr_([a-z])$/;
+const $6d28e8e62a4d602f$var$DIFFEXPR_FIELD_RE = /^(E[-_][A-Za-z0-9_-]+?)_g(\d+)_g(\d+)_(pval|l2fc)_attr_([a-z])$/;
 const $6d28e8e62a4d602f$export$adbe84e3322ddf23 = [
     'experiment',
     'experiment_name',
@@ -2874,7 +2870,7 @@ function $6d28e8e62a4d602f$export$ba4cd509d0763838(doc, diffExpressionFields, ex
             byContrast.set(key, entry);
         }
         if (parsed.stat === 'pval') entry.pval = val;
-        else entry.l2fc = val; // l2fc or logfc
+        else entry.l2fc = val;
     }
     const maxPval = cutoffs && cutoffs.diffMaxPval;
     const maxPvalActive = maxPval !== null && maxPval !== undefined && maxPval !== '' && Number.isFinite(+maxPval);
@@ -11390,12 +11386,22 @@ const $4ab64e76c1caef59$var$baseColDefs = [
         suppressMovable: true
     }
 ];
+// Hoisted so the reference is stable across renders. ag-grid otherwise sees a
+// "new" defaultColDef on every parent re-render (e.g. when hovering a row
+// triggers setHoveredId in the parent) and re-applies column state, which
+// snaps any user-resized columns back to their original widths.
+const $4ab64e76c1caef59$var$DEFAULT_COL_DEF = {
+    resizable: true,
+    sortable: true,
+    filter: false,
+    suppressMenu: true
+};
 function $4ab64e76c1caef59$var$arraysEqual(a, b) {
     if (a.length !== b.length) return false;
     for(let i = 0; i < a.length; i++)if (a[i] !== b[i]) return false;
     return true;
 }
-function $4ab64e76c1caef59$var$buildFieldInfo(fields, studies, expressionSamples) {
+function $4ab64e76c1caef59$export$7b242440eb2c300d(fields, studies, expressionSamples) {
     const info = {};
     if (!fields || !studies || !expressionSamples) return info;
     const wanted = new Set(fields);
@@ -11684,7 +11690,7 @@ function $4ab64e76c1caef59$var$buildColumnDefs(fields, fieldInfo, expanded, togg
     ];
 }
 const $4ab64e76c1caef59$var$ExprTable = ({ rows: rows, fields: fields, onReorder: onReorder, studies: studies, expressionSamples: expressionSamples, onHoverRow: onHoverRow })=>{
-    const fieldInfo = (0, $gXNCa$react.useMemo)(()=>$4ab64e76c1caef59$var$buildFieldInfo(fields, studies, expressionSamples), [
+    const fieldInfo = (0, $gXNCa$react.useMemo)(()=>$4ab64e76c1caef59$export$7b242440eb2c300d(fields, studies, expressionSamples), [
         fields,
         studies,
         expressionSamples
@@ -11730,12 +11736,7 @@ const $4ab64e76c1caef59$var$ExprTable = ({ rows: rows, fields: fields, onReorder
         children: /*#__PURE__*/ (0, $gXNCa$reactjsxruntime.jsx)((0, $gXNCa$aggridreact.AgGridReact), {
             rowData: rows,
             columnDefs: columnDefs,
-            defaultColDef: {
-                resizable: true,
-                sortable: true,
-                filter: false,
-                suppressMenu: true
-            },
+            defaultColDef: $4ab64e76c1caef59$var$DEFAULT_COL_DEF,
             animateRows: false,
             suppressFieldDotNotation: true,
             suppressDragLeaveHidesColumns: true,
@@ -12380,20 +12381,50 @@ function $1fd2507769d5bd00$var$tsvCell(v) {
     const s = typeof v === 'object' ? JSON.stringify(v) : String(v);
     return s.replace(/[\t\r\n]+/g, ' ');
 }
-function $1fd2507769d5bd00$var$downloadTsv(filename, rows, fields) {
+// Mirror the on-screen table header in the TSV: one row per metadata level
+// the table is showing (Study, then one row per distinct factor type, then
+// one row per distinct characteristic type), followed by the leaf header
+// (Gene ID / Name / per-sample group). The first two columns are repurposed
+// to carry the row category and the row's specific name, matching the
+// pinned-column labels in ExprTable.
+function $1fd2507769d5bd00$var$downloadTsv(filename, rows, fields, studies, expressionSamples) {
     const cols = [
         'id',
         'name',
         ...fields
     ];
-    const headerLabels = [
-        'id',
-        'name',
-        ...fields.map((f)=>f.replace(/__expr$/, ''))
-    ];
-    const lines = [
-        headerLabels.join('\t')
-    ];
+    const fieldInfo = (0, $4ab64e76c1caef59$export$7b242440eb2c300d)(fields, studies, expressionSamples);
+    const factorTypes = new Set();
+    const charTypes = new Set();
+    for (const f of fields){
+        const info = fieldInfo[f];
+        if (!info) continue;
+        Object.keys(info.factors || {}).forEach((t)=>factorTypes.add(t));
+        Object.keys(info.characteristics || {}).forEach((t)=>charTypes.add(t));
+    }
+    const factorTypeList = Array.from(factorTypes).sort();
+    const charTypeList = Array.from(charTypes).sort();
+    const metaRow = (cat, label, getValue)=>{
+        const cells = [
+            cat,
+            label
+        ];
+        for (const f of fields)cells.push($1fd2507769d5bd00$var$tsvCell(getValue(fieldInfo[f] || {})));
+        return cells.join('\t');
+    };
+    const lines = [];
+    lines.push(metaRow('Study', 'Title', (info)=>info.studyDescription || ''));
+    for (const t of factorTypeList)lines.push(metaRow('Factor', t, (info)=>info.factors && info.factors[t] || ''));
+    for (const t of charTypeList)lines.push(metaRow('Characteristic', t, (info)=>info.characteristics && info.characteristics[t] || ''));
+    // Leaf header — column ids for the data rows.
+    lines.push([
+        'Gene ID',
+        'Name',
+        ...fields.map((f)=>{
+            const info = fieldInfo[f];
+            return info && info.group || f.replace(/__expr$/, '');
+        })
+    ].join('\t'));
     for (const r of rows)lines.push(cols.map((c)=>$1fd2507769d5bd00$var$tsvCell(r[c])).join('\t'));
     const blob = new Blob([
         lines.join('\n') + '\n'
@@ -12551,7 +12582,7 @@ const $1fd2507769d5bd00$var$TaxonPanel = ({ taxon: taxon, studies: studies, expr
                         size: "sm",
                         variant: "outline-secondary",
                         disabled: filteredRows.length === 0 || visibleFields.length === 0,
-                        onClick: ()=>$1fd2507769d5bd00$var$downloadTsv(`expression_${taxon}.tsv`, filteredRows, visibleFields),
+                        onClick: ()=>$1fd2507769d5bd00$var$downloadTsv(`expression_${taxon}.tsv`, filteredRows, visibleFields, studies, expressionSamples),
                         title: "Download the visible rows and columns as tab-delimited text",
                         children: "Download TSV"
                     }),