gramene-search 2.0.2 → 2.0.5
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/.claude/settings.local.json +8 -1
- package/.parcel-cache/83e7562660f7cc15-BundleGraph +0 -0
- package/.parcel-cache/d3a1b9507cb44047-AssetGraph +0 -0
- package/.parcel-cache/data.mdb +0 -0
- package/.parcel-cache/dc1da35000e13623-RequestGraph +0 -0
- package/.parcel-cache/lock.mdb +0 -0
- package/.parcel-cache/snapshot-dc1da35000e13623.txt +2 -2
- package/dist/index.css +431 -0
- package/dist/index.css.map +1 -1
- package/dist/index.js +3555 -1119
- package/dist/index.js.map +1 -1
- package/package.json +2 -1
- package/src/bundles/api.js +33 -26
- package/src/bundles/exporter.js +4 -1
- package/src/bundles/exprViz.js +422 -0
- package/src/bundles/index.js +2 -1
- package/src/bundles/swaggerFields.js +13 -0
- package/src/bundles/views.js +30 -12
- package/src/components/exprViz/ExprTable.js +339 -0
- package/src/components/exprViz/ExprVizView.js +400 -0
- package/src/components/exprViz/FieldsModal.js +441 -0
- package/src/components/exprViz/ParallelCoordsPlot.js +407 -0
- package/src/components/exprViz/styles.css +471 -0
- package/src/components/geneSearchUI.js +2 -0
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"Bash(git -C /Users/olson/src/warelab/gramene-search add src/bundles/index.js src/bundles/views.js src/bundles/exporter.js src/bundles/ontologies.js src/bundles/swaggerFields.js src/components/geneSearchUI.js src/components/results/details/VEP.js src/components/exporter/ src/demo.js src/fieldCatalog.overlay.json src/vepStudyInfo.js)",
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"Bash(git -C /Users/olson/src/warelab/gramene-search commit -m ' *)",
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"Bash(git -C /Users/olson/src/warelab/gramene-search add src/bundles/swaggerFields.js)",
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"Bash(git commit -m ' *)"
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"Bash(git commit -m ' *)",
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"Bash(node -e \"const d3 = require\\('/Users/olson/src/warelab/gramene-search/node_modules/d3/src/index.js'\\); console.log\\(typeof d3.scalePoint, typeof d3.scaleLinear, typeof d3.line, typeof d3.axisLeft, typeof d3.extent\\);\")",
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"Bash(git checkout *)",
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"Bash(node -e \"const d3 = require\\('/Users/olson/src/warelab/gramene-search/node_modules/d3/src/index.js'\\); console.log\\(typeof d3.scaleLog, typeof d3.scaleSymlog\\);\")",
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"Bash(curl -s \"https://data.sorghumbase.org/auth_testing/experiments?rows=-1\")",
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"Bash(python3 -c \"import json,sys; data=json.load\\(sys.stdin\\); ids=[d.get\\('_id'\\) for d in data if 'CURD' in d.get\\('_id',''\\)]; print\\('CURD studies:', ids[:10]\\); print\\('total:', len\\(data\\)\\)\")",
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"Bash(python3 -c \"import json,sys; data=json.load\\(sys.stdin\\); h=[d for d in data if d.get\\('_id'\\)=='E-CURD-148']; print\\(json.dumps\\(h, indent=2\\)[:600]\\)\")",
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"Bash(curl -s \"https://data.sorghumbase.org/auth_testing/search?q=*:*&rows=0&stats=true&stats.field=E_CURD_148_g5_g1_l2fc_attr_f&stats.field=E_CURD_148_g5_g1_pval_attr_f\")"
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.exprviz-view {
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.exprviz-tabs {
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.exprviz-tab-panel {
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.exprviz-toolbar .btn-group > .btn:last-child:not(:first-child), .exprviz-toolbar .btn-group > .btn:last-child:not(:first-child).btn-sm {
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.exprviz-toolbar .exprviz-status {
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.exprviz-status {
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font-size: .8rem;
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.exprviz-body {
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display: flex;
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.exprviz-plot {
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background: #fff;
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border: 1px solid #ddd;
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}
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.exprviz-resizer {
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cursor: row-resize;
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background: #f0f0f0;
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border-top: 1px solid #ddd;
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border-bottom: 1px solid #ddd;
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flex: none;
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content: "";
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.exprviz-resizer:hover:before, .exprviz-resizer:active:before {
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+
.exprviz-toggle-caret {
|
|
2946
|
+
color: #888;
|
|
2947
|
+
width: .9em;
|
|
2948
|
+
margin-right: 2px;
|
|
2949
|
+
font-size: .75em;
|
|
2950
|
+
display: inline-block;
|
|
2951
|
+
}
|
|
2952
|
+
|
|
2953
|
+
.exprviz-toggle-header:hover .exprviz-toggle-caret {
|
|
2954
|
+
color: #2a6ebb;
|
|
2955
|
+
}
|
|
2956
|
+
|
|
2957
|
+
.exprviz-fields-layout {
|
|
2958
|
+
grid-template-columns: 320px 1fr;
|
|
2959
|
+
gap: .75rem;
|
|
2960
|
+
height: 60vh;
|
|
2961
|
+
display: grid;
|
|
2962
|
+
}
|
|
2963
|
+
|
|
2964
|
+
.exprviz-tree {
|
|
2965
|
+
border: 1px solid #eee;
|
|
2966
|
+
padding: .4rem .5rem;
|
|
2967
|
+
font-size: .85rem;
|
|
2968
|
+
overflow-y: auto;
|
|
2969
|
+
}
|
|
2970
|
+
|
|
2971
|
+
.exprviz-tree-search {
|
|
2972
|
+
box-sizing: border-box;
|
|
2973
|
+
border: 1px solid #ccc;
|
|
2974
|
+
border-radius: 3px;
|
|
2975
|
+
width: 100%;
|
|
2976
|
+
margin-bottom: .4rem;
|
|
2977
|
+
padding: 4px 6px;
|
|
2978
|
+
font-size: .85rem;
|
|
2979
|
+
}
|
|
2980
|
+
|
|
2981
|
+
.exprviz-tree-group {
|
|
2982
|
+
margin-bottom: .5rem;
|
|
2983
|
+
}
|
|
2984
|
+
|
|
2985
|
+
.exprviz-tree-group-header {
|
|
2986
|
+
cursor: pointer;
|
|
2987
|
+
user-select: none;
|
|
2988
|
+
padding: 2px 0;
|
|
2989
|
+
}
|
|
2990
|
+
|
|
2991
|
+
.exprviz-tree-caret {
|
|
2992
|
+
color: #888;
|
|
2993
|
+
width: 1em;
|
|
2994
|
+
display: inline-block;
|
|
2995
|
+
}
|
|
2996
|
+
|
|
2997
|
+
.exprviz-tree-type {
|
|
2998
|
+
border-left: 2px solid #0000;
|
|
2999
|
+
margin-left: .5rem;
|
|
3000
|
+
padding-left: .25rem;
|
|
3001
|
+
}
|
|
3002
|
+
|
|
3003
|
+
.exprviz-tree-type.is-active {
|
|
3004
|
+
border-left-color: #2a6ebb;
|
|
3005
|
+
}
|
|
3006
|
+
|
|
3007
|
+
.exprviz-tree-type-header {
|
|
3008
|
+
cursor: pointer;
|
|
3009
|
+
user-select: none;
|
|
3010
|
+
align-items: center;
|
|
3011
|
+
padding: 2px 0;
|
|
3012
|
+
display: flex;
|
|
3013
|
+
}
|
|
3014
|
+
|
|
3015
|
+
.exprviz-tree-type-header:hover {
|
|
3016
|
+
background: #f5f8ff;
|
|
3017
|
+
}
|
|
3018
|
+
|
|
3019
|
+
.exprviz-tree-type-label {
|
|
3020
|
+
text-overflow: ellipsis;
|
|
3021
|
+
white-space: nowrap;
|
|
3022
|
+
flex: 1;
|
|
3023
|
+
overflow: hidden;
|
|
3024
|
+
}
|
|
3025
|
+
|
|
3026
|
+
.exprviz-tree-type-count {
|
|
3027
|
+
color: #888;
|
|
3028
|
+
font-variant-numeric: tabular-nums;
|
|
3029
|
+
margin-left: .5rem;
|
|
3030
|
+
}
|
|
3031
|
+
|
|
3032
|
+
.exprviz-tree-values {
|
|
3033
|
+
border-left: 1px dashed #e0e0e0;
|
|
3034
|
+
margin: .25rem 0 .5rem 1.25rem;
|
|
3035
|
+
padding-left: .25rem;
|
|
3036
|
+
}
|
|
3037
|
+
|
|
3038
|
+
.exprviz-values-toolbar {
|
|
3039
|
+
align-items: center;
|
|
3040
|
+
gap: .5rem;
|
|
3041
|
+
margin-bottom: .25rem;
|
|
3042
|
+
display: flex;
|
|
3043
|
+
}
|
|
3044
|
+
|
|
3045
|
+
.exprviz-tree-value {
|
|
3046
|
+
cursor: pointer;
|
|
3047
|
+
align-items: center;
|
|
3048
|
+
gap: .4rem;
|
|
3049
|
+
padding: 1px 0;
|
|
3050
|
+
display: flex;
|
|
3051
|
+
}
|
|
3052
|
+
|
|
3053
|
+
.exprviz-tree-value:hover {
|
|
3054
|
+
background: #fafaff;
|
|
3055
|
+
}
|
|
3056
|
+
|
|
3057
|
+
.exprviz-tree-value-label {
|
|
3058
|
+
text-overflow: ellipsis;
|
|
3059
|
+
white-space: nowrap;
|
|
3060
|
+
flex: 1;
|
|
3061
|
+
overflow: hidden;
|
|
3062
|
+
}
|
|
3063
|
+
|
|
3064
|
+
.exprviz-tree-value-count {
|
|
3065
|
+
color: #888;
|
|
3066
|
+
font-variant-numeric: tabular-nums;
|
|
3067
|
+
font-size: .8em;
|
|
3068
|
+
}
|
|
3069
|
+
|
|
3070
|
+
.exprviz-tree-empty {
|
|
3071
|
+
color: #999;
|
|
3072
|
+
margin-left: 1rem;
|
|
3073
|
+
}
|
|
3074
|
+
|
|
3075
|
+
.exprviz-fields-preview {
|
|
3076
|
+
border: 1px solid #eee;
|
|
3077
|
+
overflow: auto;
|
|
3078
|
+
}
|
|
3079
|
+
|
|
3080
|
+
.exprviz-fields-table {
|
|
3081
|
+
border-collapse: collapse;
|
|
3082
|
+
width: 100%;
|
|
3083
|
+
font-size: .85rem;
|
|
3084
|
+
}
|
|
3085
|
+
|
|
3086
|
+
.exprviz-fields-table th, .exprviz-fields-table td {
|
|
3087
|
+
white-space: nowrap;
|
|
3088
|
+
text-align: left;
|
|
3089
|
+
border-bottom: 1px solid #f0f0f0;
|
|
3090
|
+
padding: 4px 8px;
|
|
3091
|
+
}
|
|
3092
|
+
|
|
3093
|
+
.exprviz-fields-table thead th {
|
|
3094
|
+
z-index: 1;
|
|
3095
|
+
background: #fafafa;
|
|
3096
|
+
border-bottom: 1px solid #ddd;
|
|
3097
|
+
position: sticky;
|
|
3098
|
+
top: 0;
|
|
3099
|
+
}
|
|
3100
|
+
|
|
3101
|
+
.exprviz-col-factor {
|
|
3102
|
+
background: #eef6ff;
|
|
3103
|
+
}
|
|
3104
|
+
|
|
3105
|
+
.exprviz-col-char {
|
|
3106
|
+
background: #f5f5f0;
|
|
3107
|
+
}
|
|
3108
|
+
|
|
3109
|
+
.exprviz-fields-table tbody tr:hover {
|
|
3110
|
+
background: #fafaff;
|
|
3111
|
+
}
|
|
2681
3112
|
/*# sourceMappingURL=index.css.map */
|