gramene-search 2.0.2 → 2.0.5

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
@@ -50,7 +50,14 @@
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  "Bash(git -C /Users/olson/src/warelab/gramene-search add src/bundles/index.js src/bundles/views.js src/bundles/exporter.js src/bundles/ontologies.js src/bundles/swaggerFields.js src/components/geneSearchUI.js src/components/results/details/VEP.js src/components/exporter/ src/demo.js src/fieldCatalog.overlay.json src/vepStudyInfo.js)",
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  "Bash(git -C /Users/olson/src/warelab/gramene-search commit -m ' *)",
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  "Bash(git -C /Users/olson/src/warelab/gramene-search add src/bundles/swaggerFields.js)",
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- "Bash(git commit -m ' *)"
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+ "Bash(git commit -m ' *)",
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+ "Bash(node -e \"const d3 = require\\('/Users/olson/src/warelab/gramene-search/node_modules/d3/src/index.js'\\); console.log\\(typeof d3.scalePoint, typeof d3.scaleLinear, typeof d3.line, typeof d3.axisLeft, typeof d3.extent\\);\")",
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+ "Bash(git checkout *)",
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+ "Bash(node -e \"const d3 = require\\('/Users/olson/src/warelab/gramene-search/node_modules/d3/src/index.js'\\); console.log\\(typeof d3.scaleLog, typeof d3.scaleSymlog\\);\")",
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+ "Bash(curl -s \"https://data.sorghumbase.org/auth_testing/experiments?rows=-1\")",
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+ "Bash(python3 -c \"import json,sys; data=json.load\\(sys.stdin\\); ids=[d.get\\('_id'\\) for d in data if 'CURD' in d.get\\('_id',''\\)]; print\\('CURD studies:', ids[:10]\\); print\\('total:', len\\(data\\)\\)\")",
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+ "Bash(python3 -c \"import json,sys; data=json.load\\(sys.stdin\\); h=[d for d in data if d.get\\('_id'\\)=='E-CURD-148']; print\\(json.dumps\\(h, indent=2\\)[:600]\\)\")",
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+ "Bash(curl -s \"https://data.sorghumbase.org/auth_testing/search?q=*:*&rows=0&stats=true&stats.field=E_CURD_148_g5_g1_l2fc_attr_f&stats.field=E_CURD_148_g5_g1_pval_attr_f\")"
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  ]
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  }
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  }
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@@ -1,2 +1,2 @@
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- 299767252
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- 1777063118526964000
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+ 316800798
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+ 1777346326753367000
package/dist/index.css CHANGED
@@ -2678,4 +2678,435 @@ code.fasta {
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  .exporter-footer-summary {
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  color: #555;
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  }
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+
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+ .exprviz-view {
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+ padding: .5rem;
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+ }
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+
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+ .exprviz-tabs {
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+ margin-bottom: .5rem;
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+ }
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+
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+ .exprviz-tab-panel {
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+ flex-direction: column;
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+ gap: .5rem;
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+ min-width: 0;
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+ padding: .5rem 0;
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+ display: flex;
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+ overflow: hidden;
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+ }
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+
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+ .exprviz-toolbar {
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+ align-items: center;
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+ gap: .5rem;
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+ display: flex;
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+ }
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+
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+ .exprviz-toolbar .btn, .exprviz-toolbar .btn.btn-sm, .exprviz-toolbar .btn-group > .btn, .exprviz-toolbar .btn-group > .btn.btn-sm, .exprviz-toolbar .btn-group-sm > .btn, .exprviz-toolbar label.btn {
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+ text-transform: none !important;
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+ letter-spacing: normal !important;
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+ border-radius: .2rem !important;
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+ height: auto !important;
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+ min-height: 0 !important;
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+ padding: .25rem .5rem !important;
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+ font-size: .875rem !important;
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+ font-weight: 400 !important;
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+ line-height: 1.5 !important;
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+ }
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+
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+ .exprviz-toolbar .btn-group > .btn:not(:first-child):not(:last-child), .exprviz-toolbar .btn-group > .btn:not(:first-child):not(:last-child).btn-sm {
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+ border-radius: 0 !important;
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+ }
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+
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+ .exprviz-toolbar .btn-group > .btn:first-child:not(:last-child), .exprviz-toolbar .btn-group > .btn:first-child:not(:last-child).btn-sm {
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+ border-top-right-radius: 0 !important;
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+ border-bottom-right-radius: 0 !important;
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+ }
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+
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+ .exprviz-toolbar .btn-group > .btn:last-child:not(:first-child), .exprviz-toolbar .btn-group > .btn:last-child:not(:first-child).btn-sm {
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+ border-top-left-radius: 0 !important;
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+ border-bottom-left-radius: 0 !important;
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+ }
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+
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+ .exprviz-toolbar .btn-group {
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+ vertical-align: middle;
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+ }
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+
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+ .exprviz-toolbar .exprviz-status {
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+ text-transform: none !important;
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+ letter-spacing: normal !important;
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+ font-weight: 400 !important;
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+ }
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+
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+ .exprviz-status {
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+ color: #666;
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+ margin-left: .5rem;
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+ font-size: .85rem;
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+ }
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+
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+ .exprviz-warning {
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+ color: #b06000;
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+ cursor: help;
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+ background: #fff8e0;
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+ border: 1px solid #f0d080;
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+ border-radius: 3px;
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+ padding: 2px 6px;
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+ font-size: .8rem;
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+ }
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+
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+ .exprviz-body {
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+ flex-direction: column;
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+ min-width: 0;
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+ display: flex;
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+ overflow: hidden;
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+ }
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+
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+ .exprviz-plot {
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+ background: #fff;
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+ border: 1px solid #ddd;
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+ min-height: 120px;
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+ overflow: hidden;
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+ }
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+
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+ .exprviz-resizer {
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+ cursor: row-resize;
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+ background: #f0f0f0;
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+ border-top: 1px solid #ddd;
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+ border-bottom: 1px solid #ddd;
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+ flex: none;
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+ height: 8px;
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+ margin: 2px 0;
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+ }
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+
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+ .exprviz-resizer:before {
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+ content: "";
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+ background: #aaa;
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+ border-radius: 1px;
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+ width: 36px;
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+ height: 2px;
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+ margin: 3px auto;
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+ display: block;
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+ }
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+
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+ .exprviz-resizer:hover, .exprviz-resizer:active {
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+ background: #e0e8f5;
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+ }
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+
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+ .exprviz-resizer:hover:before, .exprviz-resizer:active:before {
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+ background: #2a6ebb;
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+ }
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+
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+ .exprviz-pc-container {
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+ width: 100%;
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+ height: 100%;
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+ }
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+
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+ .exprviz-pc-container svg {
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+ display: block;
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+ }
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+
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+ .exprviz-pc-lines path {
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+ fill: none;
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+ stroke: #4682b4;
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+ }
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+
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+ .exprviz-pc-line-in {
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+ stroke-opacity: .4;
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+ }
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+
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+ .exprviz-pc-line-out {
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+ stroke-opacity: .04;
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+ }
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+
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+ .exprviz-pc-lines path:not(.exprviz-pc-line-in):not(.exprviz-pc-line-out) {
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+ stroke-opacity: .25;
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+ }
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+
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+ .exprviz-pc-lines path.exprviz-pc-line-hover {
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+ stroke: #d62728;
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+ stroke-opacity: 1;
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+ stroke-width: 2px;
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+ }
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+
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+ .exprviz-pc-axis-dragging .domain, .exprviz-pc-axis-dragging .tick line {
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+ stroke: #555;
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+ }
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+
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+ .exprviz-pc-axis-dragging .exprviz-pc-axis-label {
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+ font-weight: bold;
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+ }
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+
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+ .exprviz-plot-empty, .exprviz-table-empty {
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+ color: #888;
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+ padding: 1rem;
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+ }
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+
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+ .exprviz-pc-tooltip {
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+ z-index: 1000;
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+ pointer-events: none;
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+ color: #222;
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+ background: #fff;
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+ border: 1px solid #bbb;
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+ border-radius: 3px;
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+ max-width: 360px;
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+ padding: 6px 8px;
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+ font-size: .78rem;
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+ line-height: 1.35;
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+ position: fixed;
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+ box-shadow: 0 2px 6px #00000026;
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+ }
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+
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+ .exprviz-pc-tip-section {
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+ letter-spacing: .04em;
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+ text-transform: uppercase;
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+ color: #888;
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+ margin-top: 4px;
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+ font-size: .72rem;
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+ }
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+
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+ .exprviz-pc-tip-row {
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+ margin-left: .4rem;
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+ }
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+
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+ .exprviz-pc-tip-key {
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+ font-weight: 600;
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+ }
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+
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+ .exprviz-table {
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+ min-width: 0;
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+ height: 480px;
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+ overflow: hidden;
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+ }
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+
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+ .exprviz-aggrid {
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+ overscroll-behavior-x: contain;
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+ width: 100%;
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+ height: 100%;
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+ }
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+
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+ .exprviz-aggrid .ag-body-viewport, .exprviz-aggrid .ag-body-horizontal-scroll-viewport, .exprviz-aggrid .ag-center-cols-viewport {
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+ overscroll-behavior-x: contain;
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+ }
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+
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+ .exprviz-aggrid .ag-header-group-cell {
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+ border-right: 1px solid #e0e0e0;
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+ font-size: .78rem;
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+ }
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+
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+ .exprviz-aggrid .ag-header-group-cell-label {
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+ white-space: nowrap;
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+ text-overflow: ellipsis;
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+ padding: 0 6px;
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+ overflow: hidden;
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+ }
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+
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+ .exprviz-aggrid .exprviz-hg-factors {
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+ color: #1e3a5f;
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+ background: #eef6ff;
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+ }
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+
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+ .exprviz-aggrid .exprviz-hg-chars {
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+ color: #4a4a30;
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+ background: #f5f5f0;
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+ }
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+
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+ .exprviz-aggrid .exprviz-hg-collapsed {
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+ color: #666;
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+ font-style: italic;
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+ }
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+
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+ .exprviz-label-header {
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+ text-align: right;
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+ white-space: nowrap;
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+ text-overflow: ellipsis;
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+ justify-content: flex-end;
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+ align-items: center;
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+ width: 100%;
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+ height: 100%;
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+ padding-right: 6px;
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+ display: flex;
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+ overflow: hidden;
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+ }
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+
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+ .exprviz-toggle-header {
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+ cursor: pointer;
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+ user-select: none;
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+ justify-content: flex-end;
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+ align-items: center;
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+ width: 100%;
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+ padding-right: 6px;
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+ display: flex;
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+ }
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+
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+ .exprviz-toggle-header:hover {
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+ color: #2a6ebb;
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+ }
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+
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+ .exprviz-toggle-caret {
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+ color: #888;
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+ width: .9em;
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+ margin-right: 2px;
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+ font-size: .75em;
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+ display: inline-block;
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+ }
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+
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+ .exprviz-toggle-header:hover .exprviz-toggle-caret {
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+ color: #2a6ebb;
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+ }
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+
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+ .exprviz-fields-layout {
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+ grid-template-columns: 320px 1fr;
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+ gap: .75rem;
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+ height: 60vh;
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+ display: grid;
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+ }
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+
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+ .exprviz-tree {
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+ border: 1px solid #eee;
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+ padding: .4rem .5rem;
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+ font-size: .85rem;
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+ overflow-y: auto;
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+ }
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+
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+ .exprviz-tree-search {
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+ box-sizing: border-box;
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+ border: 1px solid #ccc;
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+ border-radius: 3px;
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+ width: 100%;
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+ margin-bottom: .4rem;
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+ padding: 4px 6px;
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+ font-size: .85rem;
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+ }
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+
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+ .exprviz-tree-group {
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+ margin-bottom: .5rem;
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+ }
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+
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+ .exprviz-tree-group-header {
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+ cursor: pointer;
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+ user-select: none;
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+ padding: 2px 0;
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+ }
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+
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+ .exprviz-tree-caret {
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+ color: #888;
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+ width: 1em;
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+ display: inline-block;
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+ }
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+
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+ .exprviz-tree-type {
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+ border-left: 2px solid #0000;
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+ margin-left: .5rem;
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+ padding-left: .25rem;
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+ }
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+
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+ .exprviz-tree-type.is-active {
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+ border-left-color: #2a6ebb;
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+ }
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+
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+ .exprviz-tree-type-header {
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+ cursor: pointer;
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+ user-select: none;
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+ align-items: center;
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+ padding: 2px 0;
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+ display: flex;
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+ }
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+
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+ .exprviz-tree-type-header:hover {
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+ background: #f5f8ff;
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+ }
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+
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+ .exprviz-tree-type-label {
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+ text-overflow: ellipsis;
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+ white-space: nowrap;
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+ flex: 1;
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+ overflow: hidden;
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+ }
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+
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+ .exprviz-tree-type-count {
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+ color: #888;
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+ font-variant-numeric: tabular-nums;
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+ margin-left: .5rem;
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+ }
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+
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+ .exprviz-tree-values {
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+ border-left: 1px dashed #e0e0e0;
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+ margin: .25rem 0 .5rem 1.25rem;
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+ padding-left: .25rem;
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+ }
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+
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+ .exprviz-values-toolbar {
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+ align-items: center;
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+ gap: .5rem;
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+ margin-bottom: .25rem;
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+ display: flex;
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+ }
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+
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+ .exprviz-tree-value {
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+ cursor: pointer;
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+ align-items: center;
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+ gap: .4rem;
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+ padding: 1px 0;
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+ display: flex;
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+ }
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+
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+ .exprviz-tree-value:hover {
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+ background: #fafaff;
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+ }
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+
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+ .exprviz-tree-value-label {
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+ text-overflow: ellipsis;
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+ white-space: nowrap;
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+ flex: 1;
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+ overflow: hidden;
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+ }
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+
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+ .exprviz-tree-value-count {
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+ color: #888;
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+ font-variant-numeric: tabular-nums;
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+ font-size: .8em;
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+ }
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+
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+ .exprviz-tree-empty {
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+ color: #999;
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+ margin-left: 1rem;
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+ }
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+
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+ .exprviz-fields-preview {
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+ border: 1px solid #eee;
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+ overflow: auto;
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+ }
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+
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+ .exprviz-fields-table {
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+ border-collapse: collapse;
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+ width: 100%;
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+ font-size: .85rem;
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+ }
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+
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+ .exprviz-fields-table th, .exprviz-fields-table td {
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+ white-space: nowrap;
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+ text-align: left;
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+ border-bottom: 1px solid #f0f0f0;
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+ padding: 4px 8px;
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+ }
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+
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+ .exprviz-fields-table thead th {
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+ z-index: 1;
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+ background: #fafafa;
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+ border-bottom: 1px solid #ddd;
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+ position: sticky;
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+ top: 0;
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+ }
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+
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+ .exprviz-col-factor {
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+ background: #eef6ff;
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+ }
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+
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+ .exprviz-col-char {
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+ background: #f5f5f0;
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+ }
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+
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+ .exprviz-fields-table tbody tr:hover {
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+ background: #fafaff;
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+ }
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  /*# sourceMappingURL=index.css.map */