gramene-search 1.7.26 → 2.0.1

package/.parcel-cache/snapshot-dc1da35000e13623.txt

@@ -1,2 +1,2 @@
-299010731
-1777055997815079000
+299715150
+1777062532991053000

package/dist/index.js

@@ -217,6 +217,7 @@ $parcel$export(module.exports, "Status", () => $693dd8c7a5607c3a$export$96e9906d
 $parcel$export(module.exports, "Filters", () => $693dd8c7a5607c3a$export$92a576f896a9bf72);
 $parcel$export(module.exports, "Results", () => $693dd8c7a5607c3a$export$4a34de49b46a2bfa);
 $parcel$export(module.exports, "Views", () => $693dd8c7a5607c3a$export$5cb791131c501f6a);
+$parcel$export(module.exports, "Auth", () => $c5d403787de8b05f$export$2e2bcd8739ae039);
 
 
 
@@ -1528,12 +1529,14 @@ const $24971af0a229e0e3$var$grameneViews = {
             'list'
         ]);
         const autoDisable = numFound === 0 || !hasFilters;
+        const hasFirebase = !!(config && config.firebaseConfig);
         let options = raw.options;
+        if (!hasFirebase) options = options.filter((v)=>v.id !== 'userLists');
         if (overrides) options = options.filter((v)=>overrides[v.id] !== 'hidden');
         options = options.map((v)=>{
-            if (autoDisable && resultDependentIds.has(v.id)) return {
+            if (resultDependentIds.has(v.id) && autoDisable) return {
                 ...v,
-                show: 'disabled'
+                show: 'off'
             };
             if (!overrides) return v;
             const o = overrides[v.id];
@@ -2034,7 +2037,7 @@ var $0d54502f6cafe273$export$2e2bcd8739ae039 = $0d54502f6cafe273$var$grameneGeno
 
 
 var $65709bd8598fce20$exports = {};
-$65709bd8598fce20$exports = JSON.parse('{"groups":{"core":{"label":"Core identifiers","order":0},"location":{"label":"Genomic location","order":1},"structure":{"label":"Gene structure","order":2},"homology":{"label":"Homology","order":3},"expression":{"label":"Gene expression","order":4},"differential":{"label":"Differential expression","order":5},"hierarchical":{"label":"Hierarchical annotations","order":6},"pathways":{"label":"Pathways","order":7},"GO":{"label":"Gene Ontology","order":7},"PO":{"label":"Plant Ontology","order":8},"lof":{"label":"Loss of function alleles","order":9},"MAKER":{"label":"MAKER transcript metrics","order":10},"xrefs":{"label":"External references","order":11},"other":{"label":"Other","order":99}},"patterns":[{"id":"homology","match":"^homology__(.+)$","group":"homology","multiValued":true,"labelTemplate":"Homology: $1"},{"id":"pathways","match":"^pathways__(.+)$","group":"pathways","multiValued":true,"labelTemplate":"Pathway: $1"},{"id":"maker","match":"^MAKER__(.+)__attr_([a-z])$","group":"MAKER","labelTemplate":"MAKER: $1"},{"id":"xrefs","match":"^(.+)__xrefs$","group":"xrefs","multiValued":true,"labelTemplate":"$1 (xrefs)"},{"id":"expr","match":"^(E[-_][A-Za-z0-9_-]+?)_g(\\\\d+)__expr$","group":"expression","expression":true,"labelTemplate":"$1 \xb7 g$2"},{"id":"diffexpr","match":"^(E[-_][A-Za-z0-9_-]+?)_g(\\\\d+)_g(\\\\d+)_(pval|logfc|l2fc)_attr_([a-z])$","group":"differential","diffExpression":true,"labelTemplate":"$1 \xb7 g$2 vs g$3 \xb7 $4"},{"id":"bins","match":"^(fixed|uniform)_([0-9a-zA-Z]+)__bin$","group":"bins","is_hidden":true,"labelTemplate":"$1 bin ($2)"},{"id":"neighbors","match":".*neighbors_[0-9]+$","group":"neighbors","is_hidden":true,"labelTemplate":"neighbors"},{"id":"vep_merged","match":"^VEP__merged__(NAT|EMS)__attr_ss$","group":"lof","multiValued":true,"labelTemplate":"Merged $1 accessions"},{"id":"vep_detail","match":"^VEP__(.+?)__(homo|het)__(.+?)__(\\\\d+)__attr_ss$","group":"lof","multiValued":true,"labelTemplate":"$1 ($2) $3/$4"},{"id":"generic_attr","match":"^(.+)__attr_([a-z])$","group":"other","labelTemplate":"$1"}],"fields":{"id":{"group":"core","label":"Gene ID","order":1},"name":{"group":"core","label":"Name","order":2},"description":{"group":"core","label":"Description","order":4},"summary":{"group":"core","label":"Summary","order":5},"synonyms":{"group":"core","label":"Synonyms","multiValued":true,"order":3},"biotype":{"group":"core","label":"Biotype","order":6},"taxon_id":{"group":"core","label":"Taxon ID","order":8},"system_name":{"group":"core","label":"System name","order":7},"db_type":{"group":"core","label":"DB type","order":9},"closest_rep_id":{"group":"homology","label":"Closest representative ID","order":1},"closest_rep_name":{"group":"homology","label":"Closest representative name","order":2},"closest_rep_identity":{"group":"homology","label":"Closest representative identity","order":3},"closest_rep_taxon_id":{"group":"homology","label":"Closest representative taxon","order":4},"closest_rep_description":{"group":"homology","label":"Closest representative description","order":5},"model_rep_id":{"group":"homology","label":"Model representative ID","order":6},"model_rep_name":{"group":"homology","label":"Model representative name","order":7},"model_rep_identity":{"group":"homology","label":"Model representative identity","order":8},"model_rep_taxon_id":{"group":"homology","label":"Model representative taxon","order":9},"model_rep_description":{"group":"homology","label":"Model representative description","order":10},"gene_tree":{"group":"homology","label":"Gene tree ID","order":11},"pan_tree":{"group":"homology","label":"Pan-gene tree ID","order":14},"capabilities":{"group":"other","label":"Capabilities","multiValued":true},"map":{"group":"location","label":"Map","order":1},"region":{"group":"location","label":"Region","order":2},"start":{"group":"location","label":"Start","order":3},"end":{"group":"location","label":"End","order":4},"strand":{"group":"location","label":"Strand","order":5},"GO__ancestors":{"group":"hierarchical","label":"GO terms","multiValued":true,"order":1},"PO__ancestors":{"group":"hierarchical","label":"PO terms","multiValued":true,"order":2},"TO__ancestors":{"group":"hierarchical","label":"TO terms","multiValued":true,"order":3},"QTL_TO__ancestors":{"group":"hierarchical","label":"QTL traits (TO)","multiValued":true,"order":7},"domains__ancestors":{"group":"hierarchical","label":"Domains","multiValued":true,"order":4},"taxonomy__ancestors":{"group":"hierarchical","label":"Taxonomy","multiValued":true,"order":6},"supertree_attr_s":{"group":"homology","label":"Supertree","order":13},"gene_tree_root_taxon_id":{"group":"homology","label":"Gene tree root taxon","order":12},"protein__length":{"group":"structure","label":"Protein length"},"transcript__count":{"group":"structure","label":"Transcript count"},"transcript__exons":{"group":"structure","label":"Exon count"},"transcript__length":{"group":"structure","label":"Transcript length"},"expressed_in_gxa_attr_ss":{"group":"expression","label":"Expressed in GXA","multiValued":true},"MAKER__AED__attr_f":{"group":"MAKER","label":"AED","description":"Annotation Edit Distance"},"MAKER__QI1__attr_i":{"group":"MAKER","label":"QI1: Length of the 5\' UTR"},"MAKER__QI2__attr_f":{"group":"MAKER","label":"QI2: Fraction of splice sites confirmed by EST"},"MAKER__QI3__attr_f":{"group":"MAKER","label":"QI3: Fraction of exons overlapping an EST"},"MAKER__QI4__attr_f":{"group":"MAKER","label":"QI4: Fraction of exons overlapping EST or protein"},"MAKER__QI5__attr_f":{"group":"MAKER","label":"QI5: Fraction of splice sites confirmed by SNAP"},"MAKER__QI6__attr_f":{"group":"MAKER","label":"QI6: Fraction of exons overlapping a SNAP"},"MAKER__QI7__attr_i":{"group":"MAKER","label":"QI7: Number of exons in the mRNA"},"MAKER__QI8__attr_i":{"group":"MAKER","label":"QI8: Length of the 3\' UTR"},"MAKER__QI9__attr_i":{"group":"MAKER","label":"QI9: Length of the protein sequence"},"homology__all_orthologs":{"group":"homology","label":"All orthologs","multiValued":true,"order":15},"homology__ortholog_one2one":{"group":"homology","label":"1:1 orthologs","multiValued":true,"order":16},"homology__ortholog_one2many":{"group":"homology","label":"1:many orthologs","multiValued":true,"order":17},"homology__ortholog_many2many":{"group":"homology","label":"Many:many orthologs","multiValued":true,"order":18},"homology__syntenic_ortholog_one2one":{"group":"homology","label":"Syntenic 1:1 orthologs","multiValued":true,"order":19},"homology__within_species_paralog":{"group":"homology","label":"Within-species paralogs","multiValued":true,"order":20},"pathways__ancestors":{"group":"hierarchical","label":"Pathways","multiValued":true,"order":5},"canonical_transcript__attr_s":{"group":"structure","label":"Canonical transcript ID"}},"hidden":["_version_","_terms","score","gene_idx","gene_idx_multi","species_idx","compara_idx","compara_idx_multi","_id","annotations","bins","gene_structure","homology","location","xrefs","domain_roots","familyRoot__ancestors","taxonomy__ancestors","capabilities"]}');
+$65709bd8598fce20$exports = JSON.parse('{"groups":{"core":{"label":"Core identifiers","order":0},"location":{"label":"Genomic location","order":1},"structure":{"label":"Gene structure","order":2},"homology":{"label":"Homology","order":3},"expression":{"label":"Gene expression","order":4},"differential":{"label":"Differential expression","order":5},"hierarchical":{"label":"Hierarchical annotations","order":6},"pathways":{"label":"Pathways","order":7},"GO":{"label":"Gene Ontology","order":7},"PO":{"label":"Plant Ontology","order":8},"lof":{"label":"Loss of function alleles","order":9},"MAKER":{"label":"MAKER transcript metrics","order":10},"xrefs":{"label":"External references","order":11},"other":{"label":"Other","order":99}},"patterns":[{"id":"homology","match":"^homology__(.+)$","group":"homology","multiValued":true,"labelTemplate":"Homology: $1"},{"id":"pathways","match":"^pathways__(.+)$","group":"pathways","multiValued":true,"labelTemplate":"Pathway: $1"},{"id":"maker","match":"^MAKER__(.+)__attr_([a-z])$","group":"MAKER","labelTemplate":"MAKER: $1"},{"id":"xrefs","match":"^(.+)__xrefs$","group":"xrefs","multiValued":true,"labelTemplate":"$1 (xrefs)"},{"id":"expr","match":"^(E[-_][A-Za-z0-9_-]+?)_g(\\\\d+)__expr$","group":"expression","expression":true,"labelTemplate":"$1 \xb7 g$2"},{"id":"diffexpr","match":"^(E[-_][A-Za-z0-9_-]+?)_g(\\\\d+)_g(\\\\d+)_(pval|logfc|l2fc)_attr_([a-z])$","group":"differential","diffExpression":true,"labelTemplate":"$1 \xb7 g$2 vs g$3 \xb7 $4"},{"id":"bins","match":"^(fixed|uniform)_([0-9a-zA-Z]+)__bin$","group":"bins","is_hidden":true,"labelTemplate":"$1 bin ($2)"},{"id":"neighbors","match":".*neighbors_[0-9]+$","group":"neighbors","is_hidden":true,"labelTemplate":"neighbors"},{"id":"vep_merged","match":"^VEP__merged__(NAT|EMS)__attr_ss$","group":"lof","multiValued":true,"labelTemplate":"Merged $1 accessions"},{"id":"vep_detail","match":"^VEP__(.+?)__(homo|het)__(.+?)__(\\\\d+)__attr_ss$","group":"lof","multiValued":true,"labelTemplate":"$1 ($2) $3/$4"},{"id":"generic_attr","match":"^(.+)__attr_([a-z])$","group":"other","labelTemplate":"$1"}],"fields":{"id":{"group":"core","label":"Gene ID","order":1},"name":{"group":"core","label":"Name","order":2},"description":{"group":"core","label":"Description","order":4},"summary":{"group":"core","label":"Summary","order":5},"synonyms":{"group":"core","label":"Synonyms","multiValued":true,"order":3},"biotype":{"group":"core","label":"Biotype","order":6},"taxon_id":{"group":"core","label":"Taxon ID","order":8},"system_name":{"group":"core","label":"System name","order":7},"db_type":{"group":"core","label":"DB type","order":9},"closest_rep_id":{"group":"homology","label":"Closest representative ID","order":1},"closest_rep_name":{"group":"homology","label":"Closest representative name","order":2},"closest_rep_identity":{"group":"homology","label":"Closest representative identity","order":3},"closest_rep_taxon_id":{"group":"homology","label":"Closest representative taxon","order":4},"closest_rep_description":{"group":"homology","label":"Closest representative description","order":5},"model_rep_id":{"group":"homology","label":"Model representative ID","order":6},"model_rep_name":{"group":"homology","label":"Model representative name","order":7},"model_rep_identity":{"group":"homology","label":"Model representative identity","order":8},"model_rep_taxon_id":{"group":"homology","label":"Model representative taxon","order":9},"model_rep_description":{"group":"homology","label":"Model representative description","order":10},"gene_tree":{"group":"homology","label":"Gene tree ID","order":11},"pan_tree":{"group":"homology","label":"Pan-gene tree ID","order":14},"capabilities":{"group":"other","label":"Capabilities","multiValued":true},"map":{"group":"location","label":"Map","order":1},"region":{"group":"location","label":"Region","order":2},"start":{"group":"location","label":"Start","order":3},"end":{"group":"location","label":"End","order":4},"strand":{"group":"location","label":"Strand","order":5},"GO__ancestors":{"group":"hierarchical","label":"GO terms","multiValued":true,"order":1},"PO__ancestors":{"group":"hierarchical","label":"PO terms","multiValued":true,"order":2},"TO__ancestors":{"group":"hierarchical","label":"TO terms","multiValued":true,"order":3},"QTL_TO__ancestors":{"group":"hierarchical","label":"QTL traits (TO)","multiValued":true,"order":7},"domains__ancestors":{"group":"hierarchical","label":"Domains","multiValued":true,"order":4},"taxonomy__ancestors":{"group":"hierarchical","label":"Taxonomy","multiValued":true,"order":6},"supertree_attr_s":{"group":"homology","label":"Supertree","order":13},"gene_tree_root_taxon_id":{"group":"homology","label":"Gene tree root taxon","order":12},"protein__length":{"group":"structure","label":"Protein length"},"transcript__count":{"group":"structure","label":"Transcript count"},"transcript__exons":{"group":"structure","label":"Exon count"},"transcript__length":{"group":"structure","label":"Transcript length"},"expressed_in_gxa_attr_ss":{"group":"expression","label":"Expressed in GXA","multiValued":true},"MAKER__AED__attr_f":{"group":"MAKER","label":"AED","description":"Annotation Edit Distance"},"MAKER__QI1__attr_i":{"group":"MAKER","label":"QI1: Length of the 5\' UTR"},"MAKER__QI2__attr_f":{"group":"MAKER","label":"QI2: Fraction of splice sites confirmed by EST"},"MAKER__QI3__attr_f":{"group":"MAKER","label":"QI3: Fraction of exons overlapping an EST"},"MAKER__QI4__attr_f":{"group":"MAKER","label":"QI4: Fraction of exons overlapping EST or protein"},"MAKER__QI5__attr_f":{"group":"MAKER","label":"QI5: Fraction of splice sites confirmed by SNAP"},"MAKER__QI6__attr_f":{"group":"MAKER","label":"QI6: Fraction of exons overlapping a SNAP"},"MAKER__QI7__attr_i":{"group":"MAKER","label":"QI7: Number of exons in the mRNA"},"MAKER__QI8__attr_i":{"group":"MAKER","label":"QI8: Length of the 3\' UTR"},"MAKER__QI9__attr_i":{"group":"MAKER","label":"QI9: Length of the protein sequence"},"homology__all_orthologs":{"group":"homology","label":"All orthologs","multiValued":true,"order":15},"homology__ortholog_one2one":{"group":"homology","label":"1:1 orthologs","multiValued":true,"order":16},"homology__ortholog_one2many":{"group":"homology","label":"1:many orthologs","multiValued":true,"order":17},"homology__ortholog_many2many":{"group":"homology","label":"Many:many orthologs","multiValued":true,"order":18},"homology__syntenic_ortholog_one2one":{"group":"homology","label":"Syntenic 1:1 orthologs","multiValued":true,"order":19},"homology__within_species_paralog":{"group":"homology","label":"Within-species paralogs","multiValued":true,"order":20},"pathways__ancestors":{"group":"hierarchical","label":"Pathways","multiValued":true,"order":5},"canonical_transcript__attr_s":{"group":"structure","label":"Canonical transcript ID"}},"hidden":["_version_","_terms","score","gene_idx","gene_idx_multi","species_idx","compara_idx","compara_idx_multi","_id","annotations","bins","gene_structure","homology","location","xrefs","domain_roots","familyRoot__ancestors","taxonomy__ancestors","capabilities","saved_search"]}');
 
 
 const $49d5cbca2ec74b2f$export$428c2f647a2a7545 = {
@@ -2123,10 +2126,24 @@ const $49d5cbca2ec74b2f$export$428c2f647a2a7545 = {
 };
 
 
-const $0f839422d0d8c772$var$SAMPLE_QUERY = 'capabilities:expression';
-const $0f839422d0d8c772$var$SAMPLE_ROWS = 500;
-const $0f839422d0d8c772$var$DIFFEXPR_FL = 'id,*_pval_attr_f,*_logfc_attr_f,*_l2fc_attr_f';
-const $0f839422d0d8c772$var$DIFFEXPR_ROWS_PER_TAXON = 50;
+// Fields matched by these globs are multi-valued in Solr.
+const $0f839422d0d8c772$var$MULTIVALUED_PATTERNS = [
+    /__expr$/,
+    /__ancestors$/,
+    /__xrefs$/,
+    /^VEP__/,
+    /^homology__/
+];
+function $0f839422d0d8c772$var$parseCsvHeader(text) {
+    if (!text) return [];
+    const line = text.split(/\r?\n/, 1)[0] || '';
+    return line.split(',').map((s)=>s.trim().replace(/^"|"$/g, '')).filter(Boolean);
+}
+function $0f839422d0d8c772$var$synthesizedValue(name) {
+    return $0f839422d0d8c772$var$MULTIVALUED_PATTERNS.some((re)=>re.test(name)) ? [
+        0
+    ] : 0;
+}
 function $0f839422d0d8c772$var$applyTemplate(tpl, match) {
     if (!tpl) return null;
     return tpl.replace(/\$(\d+)/g, (_, n)=>match[+n] || '');
@@ -2175,40 +2192,13 @@ function $0f839422d0d8c772$var$inferType(value) {
     if (Array.isArray(value)) return 'array<' + (value.length ? $0f839422d0d8c772$var$inferType(value[0]) : 'unknown') + '>';
     return typeof value;
 }
-function $0f839422d0d8c772$var$extractSwaggerFields(swagger) {
-    const defs = swagger && swagger.definitions || {};
-    const out = {};
-    const collect = (schemaName, prefix = '')=>{
-        const def = defs[schemaName];
-        if (!def || !def.properties) return;
-        for (const [prop, spec] of Object.entries(def.properties)){
-            const fullName = prefix ? `${prefix}.${prop}` : prop;
-            let type = spec.type || 'object';
-            if (spec.$ref) type = 'ref:' + spec.$ref.split('/').pop();
-            if (spec.type === 'array') {
-                const inner = spec.items || {};
-                type = 'array<' + (inner.type || (inner.$ref ? inner.$ref.split('/').pop() : 'unknown')) + '>';
-            }
-            out[fullName] = {
-                name: fullName,
-                type: type,
-                description: spec.description || '',
-                source: 'swagger'
-            };
-        }
-    };
-    collect('Result');
-    collect('GeneDocument');
-    return out;
-}
-function $0f839422d0d8c772$var$buildCatalog(swagger, sampleDocs) {
+function $0f839422d0d8c772$var$buildCatalog(sampleDocs) {
     const hidden = new Set((0, (/*@__PURE__*/$parcel$interopDefault($65709bd8598fce20$exports))).hidden || []);
     const overlayFields = (0, (/*@__PURE__*/$parcel$interopDefault($65709bd8598fce20$exports))).fields || {};
     const patterns = (0, (/*@__PURE__*/$parcel$interopDefault($65709bd8598fce20$exports))).patterns || [];
     const groupsMeta = (0, (/*@__PURE__*/$parcel$interopDefault($65709bd8598fce20$exports))).groups || {};
-    const swaggerFields = $0f839422d0d8c772$var$extractSwaggerFields(swagger);
-    // Union keys across sample docs + swagger keys
-    const keys = new Set(Object.keys(swaggerFields));
+    // Union keys from overlay.fields (hardcoded catalog entries) and sample docs.
+    const keys = new Set(Object.keys(overlayFields));
     const sampleValues = {};
     for (const doc of sampleDocs || [])for (const [k, v] of Object.entries(doc)){
         keys.add(k);
@@ -2222,8 +2212,7 @@ function $0f839422d0d8c772$var$buildCatalog(swagger, sampleDocs) {
         if (classified && classified.isHidden) continue;
         const sampleVal = sampleValues[name];
         const sampleType = sampleVal !== undefined ? $0f839422d0d8c772$var$inferType(sampleVal) : null;
-        const swaggerEntry = swaggerFields[name];
-        const group = overlayEntry && overlayEntry.group || classified && classified.group || (swaggerEntry ? 'core' : 'other');
+        const group = overlayEntry && overlayEntry.group || classified && classified.group || 'other';
         let label = overlayEntry && overlayEntry.label || classified && classified.label || name;
         let tsvHeader = null;
         if (classified && classified.patternId === 'vep_detail') {
@@ -2240,13 +2229,13 @@ function $0f839422d0d8c772$var$buildCatalog(swagger, sampleDocs) {
             tsvHeader: tsvHeader,
             group: group,
             order: overlayEntry && overlayEntry.order != null ? overlayEntry.order : null,
-            description: overlayEntry && overlayEntry.description || swaggerEntry && swaggerEntry.description || '',
-            type: sampleType || swaggerEntry && swaggerEntry.type || 'unknown',
+            description: overlayEntry && overlayEntry.description || '',
+            type: sampleType || 'unknown',
             multiValued: multiValued,
             patternId: classified ? classified.patternId : null,
             matchGroups: classified ? classified.matchGroups : null,
             expression: !!(classified && classified.expression),
-            source: overlayEntry ? 'overlay' : swaggerEntry ? 'swagger' : 'sample'
+            source: overlayEntry ? 'overlay' : 'sample'
         };
     }
     // Build groups (explicit overlay.order first, then natural sort by label)
@@ -2270,7 +2259,6 @@ function $0f839422d0d8c772$var$buildCatalog(swagger, sampleDocs) {
         })).sort((a, b)=>a.order - b.order);
     return {
         fetchedAt: Date.now(),
-        swaggerInfo: swagger && swagger.info ? swagger.info : null,
         groups: groups,
         fields: fields
     };
@@ -2282,52 +2270,10 @@ const $0f839422d0d8c772$var$grameneFieldCatalog = (0, $gXNCa$reduxbundler.create
     staleAfter: 300000,
     getPromise: ({ store: store })=>{
         const api = store.selectGrameneAPI();
-        const swaggerUrl = typeof store.selectGrameneSwaggerURL === 'function' ? store.selectGrameneSwaggerURL() : `${api}/swagger`;
-        const sampleUrl = `${api}/search?q=${encodeURIComponent($0f839422d0d8c772$var$SAMPLE_QUERY)}&rows=${$0f839422d0d8c772$var$SAMPLE_ROWS}&fl=*`;
-        const experimentsUrl = `${api}/experiments?rows=-1`;
-        const mapsUrl = `${api}/maps?rows=-1`;
-        return Promise.all([
-            fetch(swaggerUrl).then((r)=>r.json()).catch(()=>null),
-            fetch(sampleUrl).then((r)=>r.json()).catch(()=>null),
-            fetch(experimentsUrl).then((r)=>r.json()).catch(()=>[]),
-            fetch(mapsUrl).then((r)=>r.json()).catch(()=>[])
-        ]).then(([swagger, sample, experiments, maps])=>{
-            const docs = sample && sample.response && sample.response.docs || [];
-            // Determine which species (anchor taxa) have differential experiments,
-            // then for each run a narrow discovery query scoped to that species'
-            // strain taxa so we actually surface their diffexpr field names.
-            const diffTaxa = [
-                ...new Set((experiments || []).filter((e)=>e && e.type === 'Differential' && e.taxon_id).map((e)=>e.taxon_id))
-            ];
-            const strainsByAnchor = {};
-            for (const m of maps || []){
-                const anchor = m && m.anchor_taxon_id;
-                if (!anchor) continue;
-                (strainsByAnchor[anchor] = strainsByAnchor[anchor] || []).push(m.taxon_id);
-            }
-            const discoveryFetches = diffTaxa.map((t)=>{
-                const strains = strainsByAnchor[t] || [
-                    t
-                ];
-                const fq = `taxon_id:(${strains.join(' OR ')})`;
-                const url = `${api}/search?q=${encodeURIComponent($0f839422d0d8c772$var$SAMPLE_QUERY)}` + `&rows=${$0f839422d0d8c772$var$DIFFEXPR_ROWS_PER_TAXON}` + `&fl=${encodeURIComponent($0f839422d0d8c772$var$DIFFEXPR_FL)}` + `&fq=${encodeURIComponent(fq)}`;
-                return fetch(url).then((r)=>r.json()).catch(()=>null);
-            });
-            return Promise.all(discoveryFetches).then((results)=>{
-                const diffDocs = results.flatMap((r)=>r && r.response && r.response.docs || []);
-                return $0f839422d0d8c772$var$buildCatalog(swagger, [
-                    ...docs,
-                    ...diffDocs
-                ]);
-            });
-        });
+        const url = `${api}/search?q=*:*&rows=0&wt=csv&fl=*`;
+        return fetch(url).then((r)=>r.text()).then((text)=>$0f839422d0d8c772$var$parseCsvHeader(text)).catch(()=>null);
     }
 });
-$0f839422d0d8c772$var$grameneFieldCatalog.reactGrameneFieldCatalog = (0, $gXNCa$reduxbundler.createSelector)('selectGrameneFieldCatalogShouldUpdate', (shouldUpdate)=>{
-    if (shouldUpdate) return {
-        actionCreator: 'doFetchGrameneFieldCatalog'
-    };
-});
 function $0f839422d0d8c772$var$assayFactorLabel(assay) {
     if (!assay) return '';
     const factors = Array.isArray(assay.factor) ? assay.factor : [];
@@ -2702,7 +2648,48 @@ function $0f839422d0d8c772$var$enrichLabels(catalog, expressionStudies, expressi
         groups: groups
     };
 }
-$0f839422d0d8c772$var$grameneFieldCatalog.selectFieldCatalog = (0, $gXNCa$reduxbundler.createSelector)('selectGrameneFieldCatalog', 'selectExpressionStudies', 'selectExpressionSamples', 'selectGrameneSearch', 'selectGrameneMaps', $0f839422d0d8c772$var$enrichLabels);
+function $0f839422d0d8c772$var$filterCatalogByPresentFields(catalog, present) {
+    if (!catalog || !catalog.fields || !present) return catalog;
+    const filteredFields = {};
+    for (const [name, f] of Object.entries(catalog.fields))if (present.has(name)) filteredFields[name] = f;
+    const hasContent = (g)=>g.fields && g.fields.length > 0 || g.subgroups && g.subgroups.some(hasContent);
+    const filterGroup = (g)=>{
+        const fields = (g.fields || []).filter((n)=>present.has(n));
+        const subgroups = (g.subgroups || []).map(filterGroup).filter(hasContent);
+        return {
+            ...g,
+            fields: fields,
+            subgroups: subgroups
+        };
+    };
+    const groups = (catalog.groups || []).map(filterGroup).filter(hasContent);
+    return {
+        ...catalog,
+        fields: filteredFields,
+        groups: groups
+    };
+}
+$0f839422d0d8c772$var$grameneFieldCatalog.selectFieldCatalog = (0, $gXNCa$reduxbundler.createSelector)('selectGrameneFieldCatalog', 'selectExpressionStudies', 'selectExpressionSamples', 'selectGrameneSearch', 'selectGrameneMaps', (fieldNames, studies, samples, search, maps)=>{
+    if (!fieldNames || !fieldNames.length) return null;
+    const present = new Set(fieldNames);
+    // Build a synthetic doc from the discovered field names; values carry the
+    // right JS type so inferType picks the correct multiValued/type (arrays
+    // for multi-valued fields, scalars otherwise). Derive pval/logfc
+    // companions from every l2fc field.
+    const doc = {};
+    for (const name of present){
+        doc[name] = $0f839422d0d8c772$var$synthesizedValue(name);
+        if (/_l2fc_attr_f$/.test(name)) {
+            doc[name.replace('_l2fc_', '_pval_')] = 0;
+            doc[name.replace('_l2fc_', '_logfc_')] = 0;
+        }
+    }
+    const catalog = $0f839422d0d8c772$var$buildCatalog([
+        doc
+    ]);
+    const enriched = $0f839422d0d8c772$var$enrichLabels(catalog, studies, samples, search, maps);
+    return $0f839422d0d8c772$var$filterCatalogByPresentFields(enriched, present);
+});
 $0f839422d0d8c772$var$grameneFieldCatalog.selectFieldCatalogGroups = (0, $gXNCa$reduxbundler.createSelector)('selectFieldCatalog', (catalog)=>catalog && catalog.groups || []);
 $0f839422d0d8c772$var$grameneFieldCatalog.selectFieldCatalogByName = (0, $gXNCa$reduxbundler.createSelector)('selectFieldCatalog', (catalog)=>catalog && catalog.fields || {});
 var $0f839422d0d8c772$export$2e2bcd8739ae039 = $0f839422d0d8c772$var$grameneFieldCatalog;
@@ -4528,15 +4515,12 @@ const $5c2c79352d3d7b81$export$b2e089eb3692b073 = (props)=>/*#__PURE__*/ (0, $gX
 
 
 
-const $047461923b1badda$var$firebaseConfig = {
-    apiKey: "AIzaSyCyTJmxfWgfuhI6-8uqocSiE9KOWUlkgkk",
-    authDomain: "gramene-auth.firebaseapp.com",
-    projectId: "gramene-auth",
-    storageBucket: "gramene-auth.appspot.com",
-    messagingSenderId: "590873346270",
-    appId: "1:590873346270:web:f76a31a93619e69439824f"
+const $047461923b1badda$export$54387eca9e368edc = (config)=>{
+    if (!config) return null;
+    const name = config.projectId || '[DEFAULT]';
+    if ((0, $gXNCa$firebaseapp.getApps)().some((a)=>a.name === name)) return (0, $gXNCa$firebaseapp.getApp)(name);
+    return (0, $gXNCa$firebaseapp.initializeApp)(config, name);
 };
-const $047461923b1badda$export$a4e2c8f07e884e = (0, $gXNCa$firebaseapp.initializeApp)($047461923b1badda$var$firebaseConfig);
 const $047461923b1badda$export$964d88edb00bbcaa = (suggestion)=>{
     return {
         status: 'init',
@@ -8564,7 +8548,6 @@ var $261baeb81c4d4d8a$export$2e2bcd8739ae039 = (0, $gXNCa$reduxbundlerreact.conn
 
 
 
-const $0f50f369018a42ef$var$auth = (0, $gXNCa$firebaseauth.getAuth)((0, $047461923b1badda$export$a4e2c8f07e884e));
 const $0f50f369018a42ef$var$MAX_GENE_IDS = 1000; // Define the maximum number of gene IDs allowed
 const $0f50f369018a42ef$var$formatCreatedAt = (value)=>{
     if (!value) return '';
@@ -8635,7 +8618,8 @@ const $0f50f369018a42ef$var$GeneListDisplayComponent = (props)=>{
         key: 'createdAt',
         dir: 'desc'
     });
-    (0, $gXNCa$firebaseauth.onAuthStateChanged)($0f50f369018a42ef$var$auth, (user)=>setUser(user));
+    const auth = props.auth;
+    if (auth) (0, $gXNCa$firebaseauth.onAuthStateChanged)(auth, (user)=>setUser(user));
     const toggleSort = (key)=>setSort((s)=>s.key === key ? {
                 key: key,
                 dir: s.dir === 'asc' ? 'desc' : 'asc'
@@ -8661,6 +8645,12 @@ const $0f50f369018a42ef$var$GeneListDisplayComponent = (props)=>{
         sort
     ]);
     const fetchPrivateGeneLists = async ()=>{
+        if (!auth) {
+            setPrivateGeneLists([]);
+            setError(null);
+            setNotice(null);
+            return;
+        }
         if (!user || typeof user.getIdToken !== 'function') {
             setPrivateGeneLists([]);
             setError(null);
@@ -9013,7 +9003,8 @@ const $0f50f369018a42ef$var$GeneListComponent = (props)=>{
     const [errorMessage, setErrorMessage] = (0, $gXNCa$react.useState)('');
     const [loading, setLoading] = (0, $gXNCa$react.useState)(false); // New loading state
     const [user, setUser] = (0, $gXNCa$react.useState)({});
-    (0, $gXNCa$firebaseauth.onAuthStateChanged)($0f50f369018a42ef$var$auth, (user)=>setUser(user));
+    const auth = props.auth;
+    if (auth) (0, $gXNCa$firebaseauth.onAuthStateChanged)(auth, (user)=>setUser(user));
     // Function to handle gene list input
     const handleGeneListChange = (event)=>{
         setGeneList(event.target.value);
@@ -9226,6 +9217,17 @@ const $0f50f369018a42ef$var$GeneListComponent = (props)=>{
 const $0f50f369018a42ef$var$UserGeneListsComponent = (props)=>{
     const [refreshKey, setRefreshKey] = (0, $gXNCa$react.useState)(0);
     const handleListSaved = ()=>setRefreshKey((k)=>k + 1);
+    const firebaseConfig = props.configuration && props.configuration.firebaseConfig;
+    const auth = (0, $gXNCa$react.useMemo)(()=>{
+        const app = (0, $047461923b1badda$export$54387eca9e368edc)(firebaseConfig);
+        return app ? (0, $gXNCa$firebaseauth.getAuth)(app) : null;
+    }, [
+        firebaseConfig
+    ]);
+    if (!auth) return /*#__PURE__*/ (0, $gXNCa$reactjsxruntime.jsx)((0, $gXNCa$reactbootstrap.Alert), {
+        variant: "info",
+        children: "User gene lists are not available on this site."
+    });
     return /*#__PURE__*/ (0, $gXNCa$reactjsxruntime.jsx)((0, $gXNCa$reactbootstrap.Container), {
         fluid: true,
         children: /*#__PURE__*/ (0, $gXNCa$reactjsxruntime.jsxs)((0, $gXNCa$reactbootstrap.Row), {
@@ -9234,6 +9236,7 @@ const $0f50f369018a42ef$var$UserGeneListsComponent = (props)=>{
                     children: /*#__PURE__*/ (0, $gXNCa$reactjsxruntime.jsx)($0f50f369018a42ef$var$GeneListComponent, {
                         api: props.configuration.grameneData,
                         site: props.configuration.id,
+                        auth: auth,
                         onListSaved: handleListSaved
                     })
                 }),
@@ -9241,6 +9244,7 @@ const $0f50f369018a42ef$var$UserGeneListsComponent = (props)=>{
                     children: /*#__PURE__*/ (0, $gXNCa$reactjsxruntime.jsx)($0f50f369018a42ef$var$GeneListDisplayComponent, {
                         api: props.configuration.grameneData,
                         site: props.configuration.id,
+                        auth: auth,
                         addFilter: props.doAcceptGrameneSuggestion,
                         refreshKey: refreshKey
                     })
@@ -10059,11 +10063,17 @@ var $76f7f9e488184bf9$export$2e2bcd8739ae039 = (0, $gXNCa$reduxbundlerreact.conn
 const $37b3bb0145d266b0$var$MIN_LEFT_PCT = 15;
 const $37b3bb0145d266b0$var$MAX_LEFT_PCT = 85;
 const $37b3bb0145d266b0$var$ExporterViewCmp = (props)=>{
-    const { fieldCatalog: catalog, grameneFieldCatalogIsLoading: isLoading, grameneFieldCatalogRaw: raw } = props;
+    const { fieldCatalog: catalog, grameneFieldCatalogIsLoading: isLoading, grameneFieldCatalogRaw: raw, grameneFieldCatalogShouldUpdate: shouldUpdate, doFetchGrameneFieldCatalog: doFetchGrameneFieldCatalog } = props;
     const [fieldQuery, setFieldQuery] = (0, $gXNCa$react.useState)('');
     const [leftPct, setLeftPct] = (0, $gXNCa$react.useState)(50);
     const [dragging, setDragging] = (0, $gXNCa$react.useState)(false);
     const containerRef = (0, $gXNCa$react.useRef)(null);
+    (0, $gXNCa$react.useEffect)(()=>{
+        if (shouldUpdate) doFetchGrameneFieldCatalog();
+    }, [
+        shouldUpdate,
+        doFetchGrameneFieldCatalog
+    ]);
     const onPointerMove = (0, $gXNCa$react.useCallback)((e)=>{
         const el = containerRef.current;
         if (!el) return;
@@ -10177,7 +10187,7 @@ const $37b3bb0145d266b0$var$ExporterViewCmp = (props)=>{
         ]
     });
 };
-var $37b3bb0145d266b0$export$2e2bcd8739ae039 = (0, $gXNCa$reduxbundlerreact.connect)('selectFieldCatalog', 'selectGrameneFieldCatalogIsLoading', 'selectGrameneFieldCatalogRaw', $37b3bb0145d266b0$var$ExporterViewCmp);
+var $37b3bb0145d266b0$export$2e2bcd8739ae039 = (0, $gXNCa$reduxbundlerreact.connect)('selectFieldCatalog', 'selectGrameneFieldCatalogIsLoading', 'selectGrameneFieldCatalogRaw', 'selectGrameneFieldCatalogShouldUpdate', 'doFetchGrameneFieldCatalog', $37b3bb0145d266b0$var$ExporterViewCmp);
 
 
 
@@ -10187,26 +10197,33 @@ var $37b3bb0145d266b0$export$2e2bcd8739ae039 = (0, $gXNCa$reduxbundlerreact.conn
 
 
 
-const $c5d403787de8b05f$var$auth = (0, $gXNCa$firebaseauth.getAuth)((0, $047461923b1badda$export$a4e2c8f07e884e));
 const $c5d403787de8b05f$var$provider = new (0, $gXNCa$firebaseauth.GoogleAuthProvider)();
 const $c5d403787de8b05f$var$Auth = (props)=>{
+    const firebaseConfig = props.configuration && props.configuration.firebaseConfig;
+    const auth = (0, $gXNCa$react.useMemo)(()=>{
+        const app = (0, $047461923b1badda$export$54387eca9e368edc)(firebaseConfig);
+        return app ? (0, $gXNCa$firebaseauth.getAuth)(app) : null;
+    }, [
+        firebaseConfig
+    ]);
     const [user, setUser] = (0, $gXNCa$react.useState)({});
-    (0, $gXNCa$firebaseauth.onAuthStateChanged)($c5d403787de8b05f$var$auth, (user)=>setUser(user));
+    const [open, setOpen] = (0, $gXNCa$react.useState)(true);
+    if (!auth) return null;
+    (0, $gXNCa$firebaseauth.onAuthStateChanged)(auth, (user)=>setUser(user));
     function handleLogin() {
-        (0, $gXNCa$firebaseauth.signInWithPopup)($c5d403787de8b05f$var$auth, $c5d403787de8b05f$var$provider).then((result)=>{
+        (0, $gXNCa$firebaseauth.signInWithPopup)(auth, $c5d403787de8b05f$var$provider).then((result)=>{
             setUser(result.user);
         }).catch((err)=>{
             console.log(err);
         });
     }
     function handleLogout() {
-        (0, $gXNCa$firebaseauth.signOut)($c5d403787de8b05f$var$auth).then(()=>{
+        (0, $gXNCa$firebaseauth.signOut)(auth).then(()=>{
             setUser(null);
         }).catch((err)=>{
             console.log(err);
         });
     }
-    const [open, setOpen] = (0, $gXNCa$react.useState)(true);
     return /*#__PURE__*/ (0, $gXNCa$reactjsxruntime.jsx)("div", {
         className: props.configuration.id === 'sorghum' ? 'sorghumbase-auth-container' : 'gramene-auth-container',
         children: /*#__PURE__*/ (0, $gXNCa$reactjsxruntime.jsxs)("div", {