gramene-search 1.7.22 → 1.7.23

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
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package/dist/index.js CHANGED
@@ -2020,7 +2020,7 @@ var $0d54502f6cafe273$export$2e2bcd8739ae039 = $0d54502f6cafe273$var$grameneGeno
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  var $65709bd8598fce20$exports = {};
2023
- $65709bd8598fce20$exports = JSON.parse('{"groups":{"core":{"label":"Core identifiers","order":0},"location":{"label":"Genomic location","order":1},"structure":{"label":"Gene structure","order":2},"homology":{"label":"Homology","order":3},"expression":{"label":"Gene expression","order":4},"differential":{"label":"Differential expression","order":5},"hierarchical":{"label":"Hierarchical annotations","order":6},"pathways":{"label":"Pathways","order":7},"GO":{"label":"Gene Ontology","order":7},"PO":{"label":"Plant Ontology","order":8},"lof":{"label":"Loss of function alleles","order":9},"MAKER":{"label":"MAKER transcript metrics","order":10},"xrefs":{"label":"External references","order":11},"other":{"label":"Other","order":99}},"patterns":[{"id":"homology","match":"^homology__(.+)$","group":"homology","multiValued":true,"labelTemplate":"Homology: $1"},{"id":"pathways","match":"^pathways__(.+)$","group":"pathways","multiValued":true,"labelTemplate":"Pathway: $1"},{"id":"maker","match":"^MAKER__(.+)__attr_([a-z])$","group":"MAKER","labelTemplate":"MAKER: $1"},{"id":"xrefs","match":"^(.+)__xrefs$","group":"xrefs","multiValued":true,"labelTemplate":"$1 (xrefs)"},{"id":"expr","match":"^(E[-_][A-Za-z0-9_-]+?)_g(\\\\d+)__expr$","group":"expression","expression":true,"labelTemplate":"$1 \xb7 g$2"},{"id":"diffexpr","match":"^(E[-_][A-Za-z0-9_-]+?)_g(\\\\d+)_g(\\\\d+)_(pval|logfc|l2fc)_attr_([a-z])$","group":"differential","diffExpression":true,"labelTemplate":"$1 \xb7 g$2 vs g$3 \xb7 $4"},{"id":"bins","match":"^(fixed|uniform)_([0-9a-zA-Z]+)__bin$","group":"bins","is_hidden":true,"labelTemplate":"$1 bin ($2)"},{"id":"neighbors","match":".*neighbors_[0-9]+$","group":"neighbors","is_hidden":true,"labelTemplate":"neighbors"},{"id":"vep_merged","match":"^VEP__merged__(NAT|EMS)__attr_ss$","group":"lof","multiValued":true,"labelTemplate":"Merged $1 accessions"},{"id":"vep_detail","match":"^VEP__(.+?)__(homo|het)__(.+?)__(\\\\d+)__attr_ss$","group":"lof","multiValued":true,"labelTemplate":"$1 ($2) $3/$4"},{"id":"generic_attr","match":"^(.+)__attr_([a-z])$","group":"other","labelTemplate":"$1"}],"fields":{"id":{"group":"core","label":"Gene ID","order":1},"name":{"group":"core","label":"Name","order":2},"description":{"group":"core","label":"Description","order":4},"summary":{"group":"core","label":"Summary","order":5},"synonyms":{"group":"core","label":"Synonyms","multiValued":true,"order":3},"biotype":{"group":"core","label":"Biotype","order":6},"taxon_id":{"group":"core","label":"Taxon ID","order":8},"system_name":{"group":"core","label":"System name","order":7},"db_type":{"group":"core","label":"DB type","order":9},"closest_rep_id":{"group":"homology","label":"Closest representative ID","order":1},"closest_rep_name":{"group":"homology","label":"Closest representative name","order":2},"closest_rep_identity":{"group":"homology","label":"Closest representative identity","order":3},"closest_rep_taxon_id":{"group":"homology","label":"Closest representative taxon","order":4},"closest_rep_description":{"group":"homology","label":"Closest representative description","order":5},"model_rep_id":{"group":"homology","label":"Model representative ID","order":6},"model_rep_name":{"group":"homology","label":"Model representative name","order":7},"model_rep_identity":{"group":"homology","label":"Model representative identity","order":8},"model_rep_taxon_id":{"group":"homology","label":"Model representative taxon","order":9},"model_rep_description":{"group":"homology","label":"Model representative description","order":10},"gene_tree":{"group":"homology","label":"Gene tree ID","order":11},"pan_tree":{"group":"homology","label":"Pan-gene tree ID","order":14},"capabilities":{"group":"other","label":"Capabilities","multiValued":true},"map":{"group":"location","label":"Map","order":1},"region":{"group":"location","label":"Region","order":2},"start":{"group":"location","label":"Start","order":3},"end":{"group":"location","label":"End","order":4},"strand":{"group":"location","label":"Strand","order":5},"GO__ancestors":{"group":"hierarchical","label":"GO terms","multiValued":true,"order":1},"PO__ancestors":{"group":"hierarchical","label":"PO terms","multiValued":true,"order":2},"TO__ancestors":{"group":"hierarchical","label":"TO terms","multiValued":true,"order":3},"QTL_TO__ancestors":{"group":"hierarchical","label":"QTL traits (TO)","multiValued":true,"order":7},"domains__ancestors":{"group":"hierarchical","label":"Domains","multiValued":true,"order":4},"taxonomy__ancestors":{"group":"hierarchical","label":"Taxonomy","multiValued":true,"order":6},"supertree_attr_s":{"group":"homology","label":"Supertree","order":13},"gene_tree_root_taxon_id":{"group":"homology","label":"Gene tree root taxon","order":12},"protein__length":{"group":"structure","label":"Protein length"},"transcript__count":{"group":"structure","label":"Transcript count"},"transcript__exons":{"group":"structure","label":"Exon count"},"transcript__length":{"group":"structure","label":"Transcript length"},"expressed_in_gxa_attr_ss":{"group":"expression","label":"Expressed in GXA","multiValued":true},"MAKER__AED__attr_f":{"group":"MAKER","label":"AED","description":"Annotation Edit Distance"},"MAKER__QI1__attr_i":{"group":"MAKER","label":"Length of the 5\' UTR"},"MAKER__QI2__attr_f":{"group":"MAKER","label":"Fraction of splice sites confirmed by EST"},"MAKER__QI3__attr_f":{"group":"MAKER","label":"Fraction of exons overlapping an EST"},"MAKER__QI4__attr_f":{"group":"MAKER","label":"Fraction of exons overlapping EST or protein"},"MAKER__QI7__attr_i":{"group":"MAKER","label":"Number of exons in the mRNA"},"MAKER__QI8__attr_i":{"group":"MAKER","label":"Length of the 3\' UTR"},"MAKER__QI9__attr_i":{"group":"MAKER","label":"Length of the protein sequence"},"homology__all_orthologs":{"group":"homology","label":"All orthologs","multiValued":true,"order":15},"homology__ortholog_one2one":{"group":"homology","label":"1:1 orthologs","multiValued":true,"order":16},"homology__ortholog_one2many":{"group":"homology","label":"1:many orthologs","multiValued":true,"order":17},"homology__ortholog_many2many":{"group":"homology","label":"Many:many orthologs","multiValued":true,"order":18},"homology__syntenic_ortholog_one2one":{"group":"homology","label":"Syntenic 1:1 orthologs","multiValued":true,"order":19},"homology__within_species_paralog":{"group":"homology","label":"Within-species paralogs","multiValued":true,"order":20},"pathways__ancestors":{"group":"hierarchical","label":"Pathways","multiValued":true,"order":5},"canonical_transcript__attr_s":{"group":"structure","label":"Canonical transcript ID"}},"hidden":["_version_","_terms","score","gene_idx","gene_idx_multi","species_idx","compara_idx","compara_idx_multi","_id","annotations","bins","gene_structure","homology","location","xrefs","domain_roots","familyRoot__ancestors","taxonomy__ancestors","capabilities"]}');
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+ $65709bd8598fce20$exports = JSON.parse('{"groups":{"core":{"label":"Core identifiers","order":0},"location":{"label":"Genomic location","order":1},"structure":{"label":"Gene structure","order":2},"homology":{"label":"Homology","order":3},"expression":{"label":"Gene expression","order":4},"differential":{"label":"Differential expression","order":5},"hierarchical":{"label":"Hierarchical annotations","order":6},"pathways":{"label":"Pathways","order":7},"GO":{"label":"Gene Ontology","order":7},"PO":{"label":"Plant Ontology","order":8},"lof":{"label":"Loss of function alleles","order":9},"MAKER":{"label":"MAKER transcript metrics","order":10},"xrefs":{"label":"External references","order":11},"other":{"label":"Other","order":99}},"patterns":[{"id":"homology","match":"^homology__(.+)$","group":"homology","multiValued":true,"labelTemplate":"Homology: $1"},{"id":"pathways","match":"^pathways__(.+)$","group":"pathways","multiValued":true,"labelTemplate":"Pathway: $1"},{"id":"maker","match":"^MAKER__(.+)__attr_([a-z])$","group":"MAKER","labelTemplate":"MAKER: $1"},{"id":"xrefs","match":"^(.+)__xrefs$","group":"xrefs","multiValued":true,"labelTemplate":"$1 (xrefs)"},{"id":"expr","match":"^(E[-_][A-Za-z0-9_-]+?)_g(\\\\d+)__expr$","group":"expression","expression":true,"labelTemplate":"$1 \xb7 g$2"},{"id":"diffexpr","match":"^(E[-_][A-Za-z0-9_-]+?)_g(\\\\d+)_g(\\\\d+)_(pval|logfc|l2fc)_attr_([a-z])$","group":"differential","diffExpression":true,"labelTemplate":"$1 \xb7 g$2 vs g$3 \xb7 $4"},{"id":"bins","match":"^(fixed|uniform)_([0-9a-zA-Z]+)__bin$","group":"bins","is_hidden":true,"labelTemplate":"$1 bin ($2)"},{"id":"neighbors","match":".*neighbors_[0-9]+$","group":"neighbors","is_hidden":true,"labelTemplate":"neighbors"},{"id":"vep_merged","match":"^VEP__merged__(NAT|EMS)__attr_ss$","group":"lof","multiValued":true,"labelTemplate":"Merged $1 accessions"},{"id":"vep_detail","match":"^VEP__(.+?)__(homo|het)__(.+?)__(\\\\d+)__attr_ss$","group":"lof","multiValued":true,"labelTemplate":"$1 ($2) $3/$4"},{"id":"generic_attr","match":"^(.+)__attr_([a-z])$","group":"other","labelTemplate":"$1"}],"fields":{"id":{"group":"core","label":"Gene ID","order":1},"name":{"group":"core","label":"Name","order":2},"description":{"group":"core","label":"Description","order":4},"summary":{"group":"core","label":"Summary","order":5},"synonyms":{"group":"core","label":"Synonyms","multiValued":true,"order":3},"biotype":{"group":"core","label":"Biotype","order":6},"taxon_id":{"group":"core","label":"Taxon ID","order":8},"system_name":{"group":"core","label":"System name","order":7},"db_type":{"group":"core","label":"DB type","order":9},"closest_rep_id":{"group":"homology","label":"Closest representative ID","order":1},"closest_rep_name":{"group":"homology","label":"Closest representative name","order":2},"closest_rep_identity":{"group":"homology","label":"Closest representative identity","order":3},"closest_rep_taxon_id":{"group":"homology","label":"Closest representative taxon","order":4},"closest_rep_description":{"group":"homology","label":"Closest representative description","order":5},"model_rep_id":{"group":"homology","label":"Model representative ID","order":6},"model_rep_name":{"group":"homology","label":"Model representative name","order":7},"model_rep_identity":{"group":"homology","label":"Model representative identity","order":8},"model_rep_taxon_id":{"group":"homology","label":"Model representative taxon","order":9},"model_rep_description":{"group":"homology","label":"Model representative description","order":10},"gene_tree":{"group":"homology","label":"Gene tree ID","order":11},"pan_tree":{"group":"homology","label":"Pan-gene tree ID","order":14},"capabilities":{"group":"other","label":"Capabilities","multiValued":true},"map":{"group":"location","label":"Map","order":1},"region":{"group":"location","label":"Region","order":2},"start":{"group":"location","label":"Start","order":3},"end":{"group":"location","label":"End","order":4},"strand":{"group":"location","label":"Strand","order":5},"GO__ancestors":{"group":"hierarchical","label":"GO terms","multiValued":true,"order":1},"PO__ancestors":{"group":"hierarchical","label":"PO terms","multiValued":true,"order":2},"TO__ancestors":{"group":"hierarchical","label":"TO terms","multiValued":true,"order":3},"QTL_TO__ancestors":{"group":"hierarchical","label":"QTL traits (TO)","multiValued":true,"order":7},"domains__ancestors":{"group":"hierarchical","label":"Domains","multiValued":true,"order":4},"taxonomy__ancestors":{"group":"hierarchical","label":"Taxonomy","multiValued":true,"order":6},"supertree_attr_s":{"group":"homology","label":"Supertree","order":13},"gene_tree_root_taxon_id":{"group":"homology","label":"Gene tree root taxon","order":12},"protein__length":{"group":"structure","label":"Protein length"},"transcript__count":{"group":"structure","label":"Transcript count"},"transcript__exons":{"group":"structure","label":"Exon count"},"transcript__length":{"group":"structure","label":"Transcript length"},"expressed_in_gxa_attr_ss":{"group":"expression","label":"Expressed in GXA","multiValued":true},"MAKER__AED__attr_f":{"group":"MAKER","label":"AED","description":"Annotation Edit Distance"},"MAKER__QI1__attr_i":{"group":"MAKER","label":"QI1: Length of the 5\' UTR"},"MAKER__QI2__attr_f":{"group":"MAKER","label":"QI2: Fraction of splice sites confirmed by EST"},"MAKER__QI3__attr_f":{"group":"MAKER","label":"QI3: Fraction of exons overlapping an EST"},"MAKER__QI4__attr_f":{"group":"MAKER","label":"QI4: Fraction of exons overlapping EST or protein"},"MAKER__QI7__attr_i":{"group":"MAKER","label":"QI7: Number of exons in the mRNA"},"MAKER__QI8__attr_i":{"group":"MAKER","label":"QI8: Length of the 3\' UTR"},"MAKER__QI9__attr_i":{"group":"MAKER","label":"QI9: Length of the protein sequence"},"homology__all_orthologs":{"group":"homology","label":"All orthologs","multiValued":true,"order":15},"homology__ortholog_one2one":{"group":"homology","label":"1:1 orthologs","multiValued":true,"order":16},"homology__ortholog_one2many":{"group":"homology","label":"1:many orthologs","multiValued":true,"order":17},"homology__ortholog_many2many":{"group":"homology","label":"Many:many orthologs","multiValued":true,"order":18},"homology__syntenic_ortholog_one2one":{"group":"homology","label":"Syntenic 1:1 orthologs","multiValued":true,"order":19},"homology__within_species_paralog":{"group":"homology","label":"Within-species paralogs","multiValued":true,"order":20},"pathways__ancestors":{"group":"hierarchical","label":"Pathways","multiValued":true,"order":5},"canonical_transcript__attr_s":{"group":"structure","label":"Canonical transcript ID"}},"hidden":["_version_","_terms","score","gene_idx","gene_idx_multi","species_idx","compara_idx","compara_idx_multi","_id","annotations","bins","gene_structure","homology","location","xrefs","domain_roots","familyRoot__ancestors","taxonomy__ancestors","capabilities"]}');
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  const $49d5cbca2ec74b2f$export$428c2f647a2a7545 = {