gramene-search 1.7.14 → 1.7.16

package/.claude/settings.local.json

@@ -3,7 +3,53 @@
     "allow": [
       "Bash(curl -s 'https://data.gramene.org/v66/taxonomy?subset=gramene&rows=3')",
       "Bash(git add:*)",
-      "Bash(git commit -m ':*)"
+      "Bash(git commit -m ':*)",
+      "WebFetch(domain:data.gramene.org)",
+      "Bash(curl -sI https://data.gramene.org/v69/swagger)",
+      "Bash(curl -s 'https://data.gramene.org/v69/swagger')",
+      "Bash(curl -s 'https://data.gramene.org/v69/swagger' -o /tmp/gramene-swagger.json)",
+      "Read(//tmp/**)",
+      "Bash(python3 -c ' *)",
+      "Bash(curl -s 'https://data.gramene.org/v69/search?q=capabilities:pubs&rows=10&fl=*' -o /tmp/gramene-sample.json)",
+      "Bash(python3)",
+      "Bash(node -e ' *)",
+      "Bash(node --check src/bundles/swaggerFields.js)",
+      "Bash(node -e \"JSON.parse\\(require\\('fs'\\).readFileSync\\('src/fieldCatalog.overlay.json'\\)\\);console.log\\('overlay JSON ok'\\)\")",
+      "Bash(node --check src/bundles/views.js)",
+      "Bash(node --check src/components/exporter/ExporterView.jsx)",
+      "Bash(curl -s 'https://data.gramene.org/v69/assays?rows=3')",
+      "Bash(python3 -m json.tool)",
+      "Bash(curl -s 'https://data.gramene.org/v69/experiments?rows=2')",
+      "Bash(curl -s 'https://data.gramene.org/v69/search?q=capabilities:pubs&rows=1&fl=*')",
+      "Bash(python3 -c \"import json,sys; d=json.load\\(sys.stdin\\); docs=d.get\\('response',{}\\).get\\('docs',[]\\); print\\('\\\\n'.join\\(sorted\\(docs[0].keys\\(\\)\\)\\) if docs else 'no docs'\\)\")",
+      "Bash(curl -s 'https://data.gramene.org/v69/experiments?idList=E-CURD-29')",
+      "Bash(curl -s 'https://data.gramene.org/v69/assays?experiment=E-CURD-29&rows=3')",
+      "Bash(curl -s 'https://data.gramene.org/v69/experiments?rows=-1')",
+      "Bash(curl -s 'https://data.gramene.org/v69/maps?rows=5')",
+      "Bash(curl -s 'https://data.gramene.org/v69/search?q=capabilities:pubs&rows=0&facet=true&facet.field=taxon_id&facet.limit=20&facet.mincount=1')",
+      "Bash(curl -s 'https://data.gramene.org/v69/search?q=capabilities:expression&rows=0&facet=true&facet.field=taxon_id&facet.limit=20&facet.mincount=1')",
+      "Bash(curl -s -o /dev/null -w '%{http_code}\\\\n' 'https://data.gramene.org/v69/schema/fields')",
+      "Bash(curl -s 'https://data.gramene.org/v69/')",
+      "Bash(curl -s -o /dev/null -w '%{http_code}\\\\n' 'https://data.gramene.org/v69/admin/luke')",
+      "Bash(curl -s 'https://data.gramene.org/v69/GO?idList=8150&rows=1')",
+      "Bash(curl -s 'https://data.gramene.org/v69/pathways?idList=0&rows=1')",
+      "Bash(curl -s 'https://data.gramene.org/v69/GO?idList=8150,0&rows=2')",
+      "Bash(curl -s 'https://data.gramene.org/v69/PO?idList=9012,0&rows=2')",
+      "Bash(curl -s 'https://data.gramene.org/v69/TO?idList=20,0&rows=2')",
+      "Bash(curl -s 'https://data.gramene.org/v69/domains?idList=1,0&rows=2')",
+      "Bash(curl -s 'https://data.gramene.org/v69/pathways?idList=R-PLT-1643685,0&rows=2')",
+      "Bash(curl -s 'https://data.gramene.org/v69/pathways?idList=8933811,8933729,8933839,0&rows=4')",
+      "Bash(curl -s 'https://data.sorghumbase.org/sorghum_v10/QTL_TO?idList=1,0&rows=2')",
+      "Bash(curl -s 'https://data.sorghumbase.org/sorghum_v10/swagger')",
+      "Bash(python3 -c \"import sys,json; d=json.load\\(sys.stdin\\); print\\([p for p in d.get\\('paths',{}\\).keys\\(\\) if 'QTL' in p or 'TO' in p or 'ontolog' in p.lower\\(\\)]\\)\")",
+      "Bash(curl -s 'https://data.sorghumbase.org/sorghum_v10/TO?idList=17,77,1005,0&rows=4')",
+      "Bash(git -C /Users/olson/src/warelab/gramene-search status)",
+      "Bash(git -C /Users/olson/src/warelab/gramene-search diff --stat)",
+      "Bash(git -C /Users/olson/src/warelab/gramene-search log --oneline -n 5)",
+      "Bash(git -C /Users/olson/src/warelab/gramene-search diff src/bundles/index.js src/bundles/views.js src/components/geneSearchUI.js src/components/results/details/VEP.js src/demo.js)",
+      "Bash(git -C /Users/olson/src/warelab/gramene-search add src/bundles/index.js src/bundles/views.js src/bundles/exporter.js src/bundles/ontologies.js src/bundles/swaggerFields.js src/components/geneSearchUI.js src/components/results/details/VEP.js src/components/exporter/ src/demo.js src/fieldCatalog.overlay.json src/vepStudyInfo.js)",
+      "Bash(git -C /Users/olson/src/warelab/gramene-search commit -m ' *)",
+      "Bash(git -C /Users/olson/src/warelab/gramene-search add src/bundles/swaggerFields.js)"
     ]
   }
 }

package/.parcel-cache/snapshot-dc1da35000e13623.txt

@@ -1,2 +1,2 @@
-258647257
-1776269033115909000
+281877745
+1776798889143349000

package/dist/index.css

@@ -2103,4 +2103,374 @@ code.fasta {
 .accordion-button:hover {
   background-color: #dbe8f3;
 }
+
+.exporter-view {
+  grid-template-columns: minmax(280px, 1fr) minmax(320px, 1fr);
+  gap: 1rem;
+  min-height: 400px;
+  padding: .75rem;
+  display: grid;
+}
+
+.exporter-pane {
+  background: #fff;
+  border: 1px solid #e0e0e0;
+  border-radius: 4px;
+  flex-direction: column;
+  max-height: 70vh;
+  display: flex;
+  overflow: hidden;
+}
+
+.exporter-pane-header {
+  background: #f8f9fa;
+  border-bottom: 1px solid #e0e0e0;
+  padding: .5rem .75rem;
+  font-size: .9rem;
+}
+
+.exporter-pane-body {
+  flex: 1;
+  padding: .5rem;
+  overflow-y: auto;
+}
+
+.exporter-panel-empty {
+  color: #888;
+  text-align: center;
+  padding: 1rem;
+  font-size: .9rem;
+}
+
+.exporter-field-tree {
+  flex-direction: column;
+  height: 100%;
+  display: flex;
+}
+
+.exporter-field-search {
+  margin-bottom: .5rem;
+  font-size: .9rem;
+}
+
+.exporter-field-tree-body {
+  flex: 1;
+  overflow-y: auto;
+}
+
+.exporter-group {
+  margin-bottom: .25rem;
+}
+
+.exporter-group-header {
+  cursor: pointer;
+  user-select: none;
+  background: #eef1f4;
+  border-radius: 3px;
+  align-items: center;
+  gap: .4rem;
+  padding: .25rem .5rem;
+  font-size: .9rem;
+  display: flex;
+}
+
+.exporter-group-header:hover {
+  background: #e3e7ec;
+}
+
+.exporter-group-chevron {
+  color: #666;
+  align-items: center;
+  display: inline-flex;
+}
+
+.exporter-group-count {
+  color: #666;
+  background: #fff;
+  border: 1px solid #ddd;
+  border-radius: 10px;
+  padding: 0 .4rem;
+  font-size: .75rem;
+}
+
+.exporter-group-actions {
+  gap: .25rem;
+  margin-left: auto;
+  display: inline-flex;
+}
+
+.exporter-group-action {
+  color: #333;
+  cursor: pointer;
+  background: #fff;
+  border: 1px solid #ccc;
+  border-radius: 3px;
+  padding: .05rem .4rem;
+  font-size: .7rem;
+  line-height: 1.4;
+}
+
+.exporter-group-action:hover:not(:disabled) {
+  background: #f0f4f8;
+  border-color: #88a;
+}
+
+.exporter-group-action:disabled {
+  opacity: .4;
+  cursor: default;
+}
+
+.exporter-group-fields {
+  margin: .25rem 0 .5rem 1.25rem;
+  padding: 0;
+  list-style: none;
+}
+
+.exporter-group-fields li {
+  padding: .1rem .25rem;
+  font-size: .85rem;
+}
+
+.exporter-group-fields label {
+  cursor: pointer;
+  border-radius: 2px;
+  align-items: center;
+  gap: .35rem;
+  width: 100%;
+  margin: 0;
+  padding: .1rem .25rem;
+  display: flex;
+}
+
+.exporter-group-fields label:hover {
+  background: #f0f4f8;
+}
+
+.exporter-field-label {
+  text-overflow: ellipsis;
+  white-space: nowrap;
+  flex: 1;
+  overflow: hidden;
+}
+
+.exporter-field-badge {
+  color: #888;
+  font-family: monospace;
+  font-size: .7rem;
+}
+
+.exporter-group-truncated {
+  color: #888;
+  padding-left: .5rem;
+  font-size: .8rem;
+}
+
+.exporter-selected {
+  flex-direction: column;
+  height: 100%;
+  display: flex;
+}
+
+.exporter-selected-header {
+  border-bottom: 1px solid #eee;
+  align-items: center;
+  gap: .5rem;
+  margin-bottom: .5rem;
+  padding: .25rem 0;
+  display: flex;
+}
+
+.exporter-selected-count {
+  color: #666;
+  background: #eef1f4;
+  border-radius: 10px;
+  padding: 0 .5rem;
+  font-size: .75rem;
+}
+
+.exporter-clear-btn {
+  margin-left: auto;
+  padding: 0;
+  font-size: .8rem;
+}
+
+.exporter-selected-list {
+  flex: 1;
+  margin: 0;
+  padding: 0;
+  list-style: none;
+  overflow-y: auto;
+}
+
+.exporter-selected-list li {
+  border-bottom: 1px solid #f0f0f0;
+  align-items: center;
+  gap: .4rem;
+  padding: .25rem .35rem;
+  font-size: .85rem;
+  display: flex;
+}
+
+.exporter-selected-index {
+  color: #888;
+  min-width: 1.75rem;
+  font-family: monospace;
+}
+
+.exporter-selected-label {
+  text-overflow: ellipsis;
+  white-space: nowrap;
+  flex: 1;
+  overflow: hidden;
+}
+
+.exporter-selected-group {
+  color: #888;
+}
+
+.exporter-selected-actions {
+  gap: .15rem;
+  display: flex;
+}
+
+.exporter-selected-actions button {
+  padding: .1rem .35rem;
+  line-height: 1;
+}
+
+.exporter-right-pane {
+  max-height: 70vh;
+}
+
+.exporter-right-split {
+  flex-direction: column;
+  flex: 1;
+  display: flex;
+  overflow: hidden;
+}
+
+.exporter-selected-section {
+  border-bottom: 1px solid #e0e0e0;
+  flex: none;
+  max-height: 35%;
+  padding: .5rem;
+  overflow-y: auto;
+}
+
+.exporter-preview-section {
+  flex-direction: column;
+  flex: 1;
+  padding: .5rem;
+  display: flex;
+  overflow: hidden;
+}
+
+.exporter-preview {
+  flex-direction: column;
+  height: 100%;
+  display: flex;
+}
+
+.exporter-preview-toolbar {
+  border-bottom: 1px solid #eee;
+  align-items: center;
+  gap: .75rem;
+  margin-bottom: .35rem;
+  padding-bottom: .35rem;
+  font-size: .85rem;
+  display: flex;
+}
+
+.exporter-preview-format label {
+  cursor: pointer;
+  margin-right: .5rem;
+}
+
+.exporter-preview-format input {
+  margin-right: .25rem;
+}
+
+.exporter-preview-status {
+  color: #888;
+  margin-left: auto;
+}
+
+.exporter-preview-status.error {
+  color: #c33;
+}
+
+.exporter-preview-body {
+  background: #fafbfc;
+  border: 1px solid #eee;
+  border-radius: 3px;
+  flex: 1;
+  overflow: auto;
+}
+
+.exporter-preview-empty {
+  color: #888;
+  text-align: center;
+  padding: 1rem;
+}
+
+.exporter-preview-tsv-scroll {
+  max-width: 100%;
+  overflow: auto;
+}
+
+.exporter-preview-tsv {
+  border-collapse: collapse;
+  width: auto;
+  font-family: -apple-system, BlinkMacSystemFont, sans-serif;
+  font-size: .8rem;
+}
+
+.exporter-preview-tsv th, .exporter-preview-tsv td {
+  text-overflow: ellipsis;
+  white-space: nowrap;
+  border: 1px solid #e5e7ea;
+  max-width: 280px;
+  padding: .2rem .5rem;
+  overflow: hidden;
+}
+
+.exporter-preview-tsv th {
+  text-align: left;
+  z-index: 1;
+  background: #f0f3f6;
+  position: sticky;
+  top: 0;
+}
+
+.exporter-preview-tsv tr:hover td {
+  background: #f4f7fa;
+}
+
+.exporter-preview-empty-row {
+  text-align: center;
+  color: #888;
+  padding: 1rem !important;
+}
+
+.exporter-preview-json {
+  margin: 0;
+  padding: .5rem;
+  font-size: .75rem;
+  line-height: 1.4;
+}
+
+.exporter-footer {
+  background: #f8f9fa;
+  border-top: 1px solid #e0e0e0;
+  flex: none;
+  justify-content: space-between;
+  align-items: center;
+  gap: .75rem;
+  padding: .5rem .75rem;
+  display: flex;
+}
+
+.exporter-footer-summary {
+  color: #555;
+}
 /*# sourceMappingURL=index.css.map */