gramene-search 1.6.7 → 1.6.9

package/.parcel-cache/snapshot-369948a06d23ec44.txt

@@ -1,2 +1,2 @@
-155348488
-1729099394956724000
+156394149
+1729101128735480000

package/.parcel-cache/snapshot-524f09471ce7017b.txt

@@ -0,0 +1,2 @@
+156393539
+1729101120946195000

package/dist/index.js

@@ -3287,87 +3287,12 @@ var $54c74a4689d5a778$export$2e2bcd8739ae039 = (0, $gXNCa$reduxbundlerreact.conn
 
 
 
-
 const $283508ffcf8a47c4$var$ggURL = {
     IRRI: "https://gringlobal.irri.org/gringlobal/accessiondetail?id=",
     ARS: "https://npgsweb.ars-grin.gov/gringlobal/accessiondetail.aspx?id=",
     ICRISAT: "https://genebank.icrisat.org/IND/PassportSummary?ID=",
     sorbmutdb: "https://www.depts.ttu.edu/igcast/sorbmutdb.php"
 };
-const $283508ffcf8a47c4$var$metaRenderer = (params)=>{
-    if (params.value.field === "accessions") {
-        const accs = params.value.accessions;
-        return /*#__PURE__*/ (0, $gXNCa$reactjsxruntime.jsx)((0, $gXNCa$reactbootstrap.Accordion), {
-            children: /*#__PURE__*/ (0, $gXNCa$reactjsxruntime.jsxs)((0, $gXNCa$reactbootstrap.Accordion).Item, {
-                children: [
-                    /*#__PURE__*/ (0, $gXNCa$reactjsxruntime.jsx)((0, $gXNCa$reactbootstrap.Accordion).Header, {
-                        children: accs.length
-                    }),
-                    /*#__PURE__*/ (0, $gXNCa$reactjsxruntime.jsx)((0, $gXNCa$reactbootstrap.Accordion).Body, {
-                        children: /*#__PURE__*/ (0, $gXNCa$reactjsxruntime.jsx)("p", {
-                            children: 'This is where the "table" goes'
-                        })
-                    })
-                ]
-            })
-        });
-    }
-    if (params.value.field === "germplasm") {
-        const genebank = params.value.stock_center;
-        const url = $283508ffcf8a47c4$var$ggURL[genebank];
-        if (params.value.germplasm_dbid && url && params.value.germplasm_dbid !== "0") return /*#__PURE__*/ (0, $gXNCa$reactjsxruntime.jsxs)("a", {
-            target: "_blank",
-            href: `${url}${params.value.germplasm_dbid}`,
-            children: [
-                params.value.pub_id,
-                " (",
-                genebank,
-                ")"
-            ]
-        });
-        if (genebank === "sorbmutdb") return /*#__PURE__*/ (0, $gXNCa$reactjsxruntime.jsxs)("form", {
-            id: params.value.pub_id,
-            action: url,
-            method: "post",
-            target: "_blank",
-            children: [
-                /*#__PURE__*/ (0, $gXNCa$reactjsxruntime.jsx)("input", {
-                    type: "hidden",
-                    name: "search",
-                    value: params.value.gene_id.replace("SORBI_3", "Sobic.")
-                }),
-                /*#__PURE__*/ (0, $gXNCa$reactjsxruntime.jsx)("input", {
-                    type: "hidden",
-                    name: "submit",
-                    value: "Search"
-                }),
-                /*#__PURE__*/ (0, $gXNCa$reactjsxruntime.jsx)("button", {
-                    type: "submit",
-                    className: "button-like-link",
-                    children: "SorbMutDB"
-                })
-            ]
-        });
-    }
-    if (params.value.field === "search") {
-        const currentURL = new URL(window.location.href);
-        currentURL.search = "";
-        currentURL.searchParams.set("category", "Germplasm");
-        currentURL.searchParams.set("fq_field", `VEP__merged__${params.value.pop_type}__attr_ss`);
-        currentURL.searchParams.set("fq_value", params.value.ens_id);
-        currentURL.searchParams.set("name", params.value.ens_id);
-        return /*#__PURE__*/ (0, $gXNCa$reactjsxruntime.jsx)((0, $gXNCa$reactbootstrap.Button), {
-            size: "sm",
-            href: currentURL.toString(),
-            children: "Search"
-        });
-    }
-    return params.value.label;
-};
-const $283508ffcf8a47c4$var$sortByLabel = (valueA, valueB, nodeA, nodeB, isDescending)=>{
-    if (valueA.label === valueB.label) return 0;
-    return valueA.label > valueB.label ? 1 : -1;
-};
 const $283508ffcf8a47c4$var$rice_studies = {
     "1": {
         label: "Rice 3K",
@@ -3534,7 +3459,6 @@ const $283508ffcf8a47c4$var$GridWithGroups = ({ groups: groups, gene_id: gene_id
         if (row.summary) initialExpanded[row.group] = row.tally < $283508ffcf8a47c4$var$THRESHOLD;
     });
     const [expandedGroups, setExpandedGroups] = (0, $gXNCa$react.useState)(initialExpanded);
-    // const gridRef = useRef();
     // Toggle group visibility
     const toggleGroup = (group)=>{
         setExpandedGroups((prevExpandedGroups)=>({
@@ -3557,6 +3481,7 @@ const $283508ffcf8a47c4$var$GridWithGroups = ({ groups: groups, gene_id: gene_id
         {
             field: "pop",
             headerName: "Study",
+            flex: 1,
             cellRenderer: (params)=>{
                 if (params.data.summary || params.data.tally === 1) return params.value;
                 return null;
@@ -3565,6 +3490,7 @@ const $283508ffcf8a47c4$var$GridWithGroups = ({ groups: groups, gene_id: gene_id
         {
             field: "conseq",
             headerName: "VEP consequence",
+            flex: 1,
             cellRenderer: (params)=>{
                 if (params.data.summary || params.data.tally === 1) return params.value;
                 return null;
@@ -3573,6 +3499,7 @@ const $283508ffcf8a47c4$var$GridWithGroups = ({ groups: groups, gene_id: gene_id
         {
             field: "status",
             headerName: "Allele status",
+            flex: 1,
             cellRenderer: (params)=>{
                 if (params.data.summary || params.data.tally === 1) return params.value;
                 return null;
@@ -3581,6 +3508,7 @@ const $283508ffcf8a47c4$var$GridWithGroups = ({ groups: groups, gene_id: gene_id
         {
             field: "accession",
             headerName: "Order Germplasm",
+            flex: 1,
             cellRenderer: (params)=>{
                 if (params.value) return /*#__PURE__*/ (0, $gXNCa$reactjsxruntime.jsx)($283508ffcf8a47c4$var$AccessionLink, {
                     germplasm: params.value.germplasm,
@@ -3597,9 +3525,20 @@ const $283508ffcf8a47c4$var$GridWithGroups = ({ groups: groups, gene_id: gene_id
                 return null;
             }
         },
+        {
+            field: "synonym",
+            headerName: "Synonym",
+            flex: 1,
+            cellRenderer: (params)=>{
+                console.log(params.data);
+                if (params.data.accession) return params.data.accession.germplasm.ens_id;
+                return null;
+            }
+        },
         {
             field: "search",
             headerName: "All LOF Genes",
+            flex: 1,
             cellRenderer: (params)=>{
                 if (params.data.accession) {
                     const currentURL = new URL(window.location.href);
@@ -3622,9 +3561,6 @@ const $283508ffcf8a47c4$var$GridWithGroups = ({ groups: groups, gene_id: gene_id
     const defaultColDef = {
         sortable: false,
         cellStyle: (params)=>{
-            // if (!params.data.summary) {
-            //   return {paddingLeft: '30px'};
-            // }
             if (params.data.summary) return {
                 cursor: "pointer"
             };
@@ -3637,7 +3573,8 @@ const $283508ffcf8a47c4$var$GridWithGroups = ({ groups: groups, gene_id: gene_id
         className: "ag-theme-quartz",
         style: {
             height: tableHeight,
-            width: "100%"
+            width: "100%",
+            maxWidth: "1200px"
         },
         children: /*#__PURE__*/ (0, $gXNCa$reactjsxruntime.jsx)((0, $gXNCa$aggridreact.AgGridReact), {
             rowData: getVisibleRowData(),