gramene-search 1.6.47 → 1.7.0

package/.parcel-cache/snapshot-dc1da35000e13623.txt

@@ -1,2 +1,2 @@
-768090808
-1765994894492363000
+833859905
+1767984531885935000

package/dist/index.js

@@ -2431,6 +2431,7 @@ const $9e29a4f60318db7a$var$Detail = (props)=>{
     const gene = props.geneDocs[props.searchResult.id];
     const [atlasExperiment, setAtlasExperiment] = (0, $gXNCa$react.useState)(null);
     const [atlasExperimentList, setAtlasExperimentList] = (0, $gXNCa$react.useState)([]);
+    const [atlasFacets, setAtlasFacets] = (0, $gXNCa$react.useState)(null);
     const [isLocal, setIsLocal] = (0, $gXNCa$react.useState)(false);
     const [activeTab, setActiveTab] = (0, $gXNCa$react.useState)('gene');
     const handleLocalAPIChange = (event)=>{
@@ -2439,6 +2440,10 @@ const $9e29a4f60318db7a$var$Detail = (props)=>{
     (0, $gXNCa$react.useEffect)(()=>{
         const tid = Math.floor(gene.taxon_id / 1000);
         if (props.expressionStudies[tid]) {
+            let facets = {
+                Differential: {},
+                Baseline: {}
+            };
             let eList = props.expressionStudies[tid].sort((a, b)=>{
                 const a_name = `${a.type}:${a.description || a._id}`;
                 const b_name = `${b.type}:${b.description || b._id}`;
@@ -2448,7 +2453,11 @@ const $9e29a4f60318db7a$var$Detail = (props)=>{
                 const in_gxa = new Set(props.searchResult.expressed_in_gxa_attr_ss);
                 eList = eList.filter((e)=>in_gxa.has(e._id));
             }
+            eList.forEach((e)=>{
+                e.factors.forEach((factor)=>facets[e.type][factor] = 1);
+            });
             setAtlasExperimentList(eList);
+            setAtlasFacets(facets);
             let refExp = eList.filter((e)=>e.isRef);
             if (refExp.length === 1) setAtlasExperiment(refExp[0]._id);
             else // no reference experiment - choose first
@@ -5318,7 +5327,8 @@ class $a67cad486021eb32$var$TaxDist extends (0, ($parcel$interopDefault($gXNCa$r
     constructor(props){
         super(props);
         this.state = {
-            collapseEmpties: true
+            collapseEmpties: true,
+            comparaOnly: true
         };
     }
     handleSelection(selections) {
@@ -5341,22 +5351,44 @@ class $a67cad486021eb32$var$TaxDist extends (0, ($parcel$interopDefault($gXNCa$r
             collapseEmpties: !this.state.collapseEmpties
         });
     }
+    toggleCompara() {
+        this.setState({
+            comparaOnly: !this.state.comparaOnly
+        });
+    }
     render() {
         let selectedTaxa = {};
         if (this.props.grameneSearch && this.state.collapseEmpties) this.props.grameneSearch.facet_counts.facet_fields.taxon_id.filter((tid, idx)=>idx % 2 === 0).forEach((tid)=>{
             selectedTaxa[tid] = true;
         });
+        else if (Object.keys(this.props.grameneGenomes.active).length === 0 && this.props.grameneMaps) Object.keys(this.props.grameneMaps).forEach((tid)=>selectedTaxa[tid] = true);
         else selectedTaxa = this.props.grameneGenomes.active;
+        if (this.state.comparaOnly && this.props.grameneMaps) Object.keys(selectedTaxa).forEach((tid)=>{
+            if (!this.props.grameneMaps[tid].in_compara) delete selectedTaxa[tid];
+        });
         return /*#__PURE__*/ (0, $gXNCa$reactjsxruntime.jsxs)("div", {
             className: "results-vis big-vis",
             children: [
-                this.props.grameneTaxDist && /*#__PURE__*/ (0, $gXNCa$reactjsxruntime.jsxs)("button", {
-                    type: "button",
-                    className: "btn btn-primary btn-sm",
-                    onClick: this.toggleEmpties.bind(this),
+                this.props.grameneTaxDist && /*#__PURE__*/ (0, $gXNCa$reactjsxruntime.jsxs)("span", {
                     children: [
-                        this.state.collapseEmpties ? 'Expand' : 'Collapse',
-                        " empty branches"
+                        /*#__PURE__*/ (0, $gXNCa$reactjsxruntime.jsxs)("button", {
+                            type: "button",
+                            className: "btn btn-outline-primary btn-sm",
+                            onClick: this.toggleEmpties.bind(this),
+                            children: [
+                                this.state.collapseEmpties ? 'Expand' : 'Collapse',
+                                " empty branches"
+                            ]
+                        }),
+                        /*#__PURE__*/ (0, $gXNCa$reactjsxruntime.jsxs)("button", {
+                            type: "button",
+                            className: "btn btn-outline-success btn-sm",
+                            onClick: this.toggleCompara.bind(this),
+                            children: [
+                                "Show ",
+                                this.state.comparaOnly ? 'all genomes' : 'compara only'
+                            ]
+                        })
                     ]
                 }),
                 this.props.grameneTaxDist && /*#__PURE__*/ (0, $gXNCa$reactjsxruntime.jsx)((0, ($parcel$interopDefault($gXNCa$gramenesearchvis))), {
@@ -5378,7 +5410,7 @@ class $a67cad486021eb32$var$TaxDist extends (0, ($parcel$interopDefault($gXNCa$r
         });
     }
 }
-var $a67cad486021eb32$export$2e2bcd8739ae039 = (0, $gXNCa$reduxbundlerreact.connect)('selectGrameneTaxDist', 'selectGrameneGenomes', 'selectGrameneSearch', $a67cad486021eb32$var$TaxDist);
+var $a67cad486021eb32$export$2e2bcd8739ae039 = (0, $gXNCa$reduxbundlerreact.connect)('selectGrameneTaxDist', 'selectGrameneGenomes', 'selectGrameneSearch', 'selectGrameneMaps', $a67cad486021eb32$var$TaxDist);