gramene-search 1.6.43 → 1.6.45

package/.parcel-cache/snapshot-dc1da35000e13623.txt

@@ -1,2 +1,2 @@
-590893704
-1762274195732352000
+598216809
+1762432192267659000

package/dist/index.js

@@ -263,7 +263,12 @@ const $9d9aeaf9299e61a1$var$grameneGermplasm = (0, $gXNCa$reduxbundler.createAsy
     actionBaseType: 'GRAMENE_GERMPLASM',
     persist: true,
     getPromise: ({ store: store })=>{
-        return fetch(`${store.selectGrameneAPI()}/germplasm?rows=-1`).then((res)=>res.json()).then((res)=>(0, ($parcel$interopDefault($gXNCa$lodash))).groupBy(res, 'ens_id'));
+        return fetch(`${store.selectGrameneAPI()}/germplasm?rows=-1`).then((res)=>res.json()).then((res)=>{
+            res.forEach((g)=>{
+                if (!g.subpop) g.subpop = "?";
+            });
+            return (0, ($parcel$interopDefault($gXNCa$lodash))).groupBy(res, 'ens_id');
+        });
     }
 });
 $9d9aeaf9299e61a1$var$grameneGermplasm.reactGrameneGermplasm = (0, $gXNCa$reduxbundler.createSelector)('selectGrameneGermplasmShouldUpdate', (shouldUpdate)=>{
@@ -3550,13 +3555,30 @@ const $283508ffcf8a47c4$var$study_info = {
             type: 'NAT'
         }
     },
-    'oryza_aus': $283508ffcf8a47c4$var$rice_studies,
-    'oryza_sativa117425': $283508ffcf8a47c4$var$rice_studies,
-    'oryza_sativa125827': $283508ffcf8a47c4$var$rice_studies,
-    'oryza_sativaazucena': $283508ffcf8a47c4$var$rice_studies,
-    'oryza_sativair64': $283508ffcf8a47c4$var$rice_studies,
-    'oryza_sativamh63': $283508ffcf8a47c4$var$rice_studies,
-    'oryza_sativazs97': $283508ffcf8a47c4$var$rice_studies
+    'oryza_aus': {
+        '20': {
+            label: '20K-RGP',
+            type: 'NAT'
+        }
+    },
+    'oryza_sativa117425': {
+        '20': {
+            label: '20K-RGP',
+            type: 'NAT'
+        }
+    },
+    'oryza_sativair64rs2': {
+        '20': {
+            label: '20K-RGP',
+            type: 'NAT'
+        }
+    },
+    'oryza_sativamh63': {
+        '20': {
+            label: '20K-RGP',
+            type: 'NAT'
+        }
+    }
 };
 const $283508ffcf8a47c4$var$AccessionLink = ({ germplasm: germplasm, gene_id: gene_id })=>{
     const genebank = germplasm.stock_center;
@@ -3609,6 +3631,19 @@ const $283508ffcf8a47c4$var$AccessionLink = ({ germplasm: germplasm, gene_id: ge
         children: germplasm.pub_id
     });
 };
+function $283508ffcf8a47c4$var$compareGermplasm(a, b) {
+    const aSub = a?.germplasm?.subpop ?? '';
+    const bSub = b?.germplasm?.subpop ?? '';
+    const subCmp = aSub.localeCompare(bSub, 'en', {
+        sensitivity: 'accent'
+    });
+    if (subCmp !== 0) return subCmp;
+    const aPub = a?.germplasm?.pub_id ?? '';
+    const bPub = b?.germplasm?.pub_id ?? '';
+    return aPub.localeCompare(bPub, 'en', {
+        sensitivity: 'accent'
+    });
+}
 function $283508ffcf8a47c4$var$group_germplasm(gene, germplasmLUT, vep_obj) {
     let accessionTable = [];
     Object.entries(vep_obj).forEach(([key, accessions])=>{
@@ -3649,7 +3684,7 @@ function $283508ffcf8a47c4$var$group_germplasm(gene, germplasmLUT, vep_obj) {
             status: status,
             tally: tally
         });
-        groups[group].forEach((acc)=>{
+        groups[group].sort($283508ffcf8a47c4$var$compareGermplasm).forEach((acc)=>{
             id++;
             grouped.push({
                 id: id,
@@ -3767,6 +3802,17 @@ const $283508ffcf8a47c4$var$GridWithGroups = ({ groups: groups, gene_id: gene_id
                 return null;
             }
         },
+        {
+            field: 'subpop',
+            headerName: 'Subpopulation',
+            filter: false,
+            sortable: false,
+            flex: 1,
+            cellRenderer: (params)=>{
+                if (params.data.accession && params.data.accession.germplasm.subpop && params.data.accession.germplasm.subpop !== "?") return params.data.accession.germplasm.subpop;
+                return null;
+            }
+        },
         {
             field: 'search',
             headerName: 'All LOF Genes',