gramene-search 1.6.37 → 1.6.39
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/.parcel-cache/83e7562660f7cc15-BundleGraph +0 -0
- package/.parcel-cache/9a0d07555444f4da-AssetGraph +0 -0
- package/.parcel-cache/d3a1b9507cb44047-AssetGraph +0 -0
- package/.parcel-cache/data.mdb +0 -0
- package/.parcel-cache/dc1da35000e13623-RequestGraph +0 -0
- package/.parcel-cache/lock.mdb +0 -0
- package/.parcel-cache/snapshot-dc1da35000e13623.txt +2 -2
- package/dist/index.css +2 -2
- package/dist/index.css.map +1 -1
- package/dist/index.js +24 -2
- package/dist/index.js.map +1 -1
- package/package.json +1 -1
- package/src/bundles/filters.js +11 -0
- package/src/components/results/genes.css +2 -2
- package/src/components/suggestions.js +4 -7
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\"5abb1db407612521\";\n@import \"1caf78728b2f5137\";\n@import \"2166a150e9f31214\";\n@import \"938d6be3f57789df\";\n@import \"aa165d1be5d1c755\";\n@import \"996096824b9f7d5a\";\n@import \"41a1dcf3bc8b5377\";\n@import \"c52016833805a9f9\";\n@import \"6f643ac0480217ea\";\n@import \"c6576577b854e1eb\";\n",".gramene-sidebar {\n position: fixed;\n background-color: #557b74;\n padding-left: 8px;\n padding-right: 8px;\n padding-bottom: 8px;\n width: 250px;\n}\n.sorghumbase-sidebar {\n position: fixed;\n background-color: #a03e34;\n padding-left: 8px;\n padding-right: 8px;\n padding-bottom: 8px;\n width: 250px;\n}\n.gramene-auth-container {\n background-color: #fff3a9;\n padding-left: 4px;\n padding-bottom: 4px;\n}\n.sorghumbase-auth-container {\n background-color: #fff3a9;\n padding-left: 4px;\n padding-bottom: 4px;\n}\n.gramene-filter-container {\n background-color: #fff3a9;\n padding-left: 4px;\n padding-bottom: 4px;\n}\n.sorghumbase-filter-container {\n background-color: #fff3a9;\n padding-left: 4px;\n padding-bottom: 4px;\n}\n.gramene-filter {\n padding-left: 4px;\n padding-right: 4px;\n padding-bottom: 4px;\n background-color: white;\n font-size: small;\n}\n.gramene-filter span:hover {\n font-weight:bolder;\n}\n.gramene-filter-AND {\n background-color: #ffcd82;\n}\n.gramene-filter-OR {\n background-color: #c5eeb9;\n}\n.gramene-filter-NOT {\n border-left-color: #ff5354;\n border-left-style: inset;\n border-left-width: 4px;\n padding-left: 4px;\n}\n.gramene-filter-operation {\n text-align: center;\n font-style: italic;\n}\n.gramene-filter-marked {\n font-weight: bolder;\n /*background-color: #feff96;*/\n}\n.gramene-filter-menu ul {\n border-top-style: solid;\n border-top-width: 2px;\n padding-left: 0;\n}\n.gramene-filter-menu li {\n display: block;\n cursor: pointer;\n padding-left: 15px;\n}\n.gramene-filter-menu li:hover {\n background-color: #feff96;\n}\n\n.gramene-view-header {\n width: 100%;\n display: flex;\n flex-wrap: nowrap;\n justify-content: space-evenly;\n font-size: larger;\n font-weight: bold;\n background-color: #fff3a96e;\n border-top: solid;\n border-top-color: #557b74;\n color: #a03e34;\n}\n\n.gramene-view-container {\n background-color: #fff3a9;\n padding-left: 4px;\n padding-right: 4px;\n padding-bottom: 4px;\n}\n.gramene-view {\n padding-left: 0px;\n padding-right: 10px;\n margin-bottom: 0;\n background-color: white;\n}\n.gramene-view-span-on {\n padding-left: 5px;\n cursor: pointer;\n vertical-align: text-bottom;\n color: #a03e34;\n}\n.gramene-view-span-off {\n padding-left: 5px;\n cursor: pointer;\n vertical-align: text-bottom;\n color: darkgray;\n}\n.gramene-view li {\n display: block;\n cursor: pointer;\n padding-left: 5px;\n border-left-style: inset;\n border-left-width: 8px;\n margin-bottom: 2px;\n}\n\n.gramene-view-on {\n border-left-color: #40a0ff;\n font-weight: bold;\n}\n.gramene-view-off {\n border-left-color: #ff6d68;\n color: grey;\n}\n.gramene-view-disabled {\n color: darkgray;\n border-left-color: #efefef;\n cursor: default!important;\n}\n#gramene-suggestion button {\n border-radius: .6rem;\n line-height: 1;\n}\n#gramene-suggestion button:focus {\n color: #fff;\n background-color: #6c757d;\n border-color: #6c757d;\n}\n\n",".visible-detail {\n border: 1px solid #557B74;\n padding: 6px 12px;\n}\n.detail {\n margin-right: auto;\n margin-left: auto;\n padding-left: 15px;\n padding-right: 15px;\n}\n.table {\n width: 100%;\n max-width: 100%;\n}\n.xrefs {\n border-collapse: collapse;\n border-spacing: 0;\n border-color: grey;\n table-layout: fixed;\n}\n.xref-name-col {\n width: 20%;\n}\n.xref-value-col {\n width: 80%;\n}\n.xref-80-col {\n width: 80%;\n}\n.xref-70-col {\n width: 70%;\n}\n.xref-10-col {\n width: 10%;\n}\n.xref-id-list {\n padding-left: 0;\n list-style: none;\n}\n.result-gene {\n padding: 0.2em;\n border: 5px solid white;\n}\n.result-gene:hover {\n border-color: antiquewhite;\n}\n.gene-title {\n /*padding-top:0.5em;*/\n}\n.gene-id {\n /*white-space: nowrap;*/\n color: black;\n}\n.gene-name {\n color: #557B74;\n margin-bottom: 0;\n}\n.gene-description {\n margin-bottom: 0;\n}\n.gene-species {\n white-space: nowrap;\n font-style: italic;\n font-size:small;\n font-weight: bold;\n}\n.gene-synonyms {\n font-size: small;\n}\n.gene-extras {\n float: right;\n border: dashed 1px blue;\n}\n.gene-panlink {\n float:right;\n}\n.gene-panlink img {\n height: 60px;\n width: auto;\n vertical-align: top;\n}\n.suggestion-panlink img {\n height: 40px;\n width: auto;\n vertical-align: top;\n}\n.gene-curation {\n float:right;\n margin-top: 20px;\n border: 1px solid grey;\n}\n.gene-curation span {\n width: 20px;\n display: inline-block;\n color: white;\n text-align: center;\n}\n.gene-curation .okay {\n background-color: #0c00f3;\n}\n.gene-curation .flagged {\n background-color: darkorange;\n}\n.gene-detail-tabs {\n display: flex;\n flex-wrap: wrap;\n white-space: nowrap;\n width: 80em;\n}\n.gene-detail-tab-closed {\n color: darkgreen;\n cursor: pointer;\n /*background-color: lightgray;*/\n}\n.gene-detail-tab-disabled {\n /*color: white;*/\n /*background-color: lightgray;*/\n color: lightgray;\n cursor: not-allowed;\n}\n.gene-detail-tab-empty {\n color: darkgreen;\n cursor: pointer;\n font-style: oblique;\n /*background-color: lightgray;*/\n}\n.gene-detail-tab-empty::before {\n content: \"Add \";\n}\n.gene-detail-tab-expanded {\n color: white;\n background-color: #557B74;\n cursor: pointer;\n}\n.result-gene-summary {\n display: flex;\n flex-flow: row nowrap;\n justify-content: flex-start;\n}\n.result-gene-summary .species-name {\n white-space: nowrap;\n font-style: italic;\n}\n.result-gene-title-body {\n flex: 1 1 auto;\n width: 1036px;\n}\n.model-ortholog, .closest-ortholog, .gene-summary-tair {\n cursor: pointer;\n flex: 1 1 auto;\n width: 500px;\n font-size: smaller;\n margin-top: 10px;\n padding: 0 1rem;\n margin-left: 1rem;\n border: 1px solid darkorange;\n}\n\n.model-ortholog {\n border: 1px dotted darkorange;\n}\n.closest-ortholog {\n border: 1px dotted darkgreen;\n}\n\n.gene-summary-tair {\n border: 1px dotted darkblue;\n}\n.gene-summary-tair .rest {\n display: none;\n}\n\n.gene-summary-tair:hover .rest {\n display: inline;\n}\n.gene-summary-tair:focus .rest {\n display: inline;\n}\n.gene-summary-tair:hover .ellipsis {\n display: none;\n}\n.gene-summary-tair:focus .ellipsis {\n display: none;\n}\n\n/* this is the \"title\" of the closest ortholog box */\n.closest-ortholog::before,\n.model-ortholog::before,\n.gene-summary-tair::before {\n position: relative;\n float: right;\n margin-top: -12px;\n margin-right: 6px;\n border: dotted 1px;\n padding: 0 1rem;\n background: #fff;\n}\n\n.model-ortholog::before {\n content: \"Model Species Homolog\";\n color: orange;\n}\n.closest-ortholog::before {\n content: \"Closest Annotated Homolog\";\n color: darkgreen;\n}\n\n/* this is the \"title\" of the closest ortholog box */\n.gene-summary-tair::before {\n content: \"TAIR Curated Description\";\n color: darkblue;\n}\n\n.rep-identity {\n float: right;\n padding-right: 10px;\n padding-top: 5px;\n font-style: italic;\n}\n.rep-identity::after {\n content: \"% identity\";\n}\n.eFP::before {\n content: url(\"../../static/images/BAR-logo.png\");\n padding-right:5px;\n position: relative;\n top: 5px;\n}\n.eFP::after {\n content: 'New!';\n color: red;\n padding-left:2px;\n font-weight: bold;\n font-style: italic;\n font-size: x-small;\n line-height: normal;\n vertical-align: super;\n}\n.gxa::before {\n content: url(\"../../static/images/expression-atlas-logo.png\");\n padding-right:5px;\n position: relative;\n top: 5px;\n}\n.gene-search-pic-sugg {\n width: 100%;\n height: 200px;\n background: url(\"../../static/images/suggestions.png\");\n background-size: contain;\n background-repeat: no-repeat;\n}\n.gene-search-pic-results {\n width: 100%;\n height: 200px;\n background: url(\"../../static/images/results.png\");\n background-size: contain;\n background-repeat: no-repeat;\n}\n.gene-search-pic-genetree {\n width: 100%;\n height: 200px;\n background: url(\"../../static/images/genetree.png\");\n background-size: contain;\n background-repeat: no-repeat;\n}\n",".MSAlignments-wrapper {\n overflow-x: scroll;\n overflow-y: hidden;\n}\n.clustal {\n white-space: nowrap;\n font-family: monospace;\n height: 18px;\n font-size: 12px;\n}\n.clustal .A,\n.clustal .I,\n.clustal .L,\n.clustal .M,\n.clustal .F,\n.clustal .W,\n.clustal .V {\n background-color: #80a0f0;\n}\n.clustal .R,\n.clustal .K {\n background-color: #f01505;\n color: #fcff89;\n}\n.clustal .N,\n.clustal .Q,\n.clustal .S,\n.clustal .T {\n background-color: #00ff00;\n}\n.clustal .D,\n.clustal .E {\n background-color: #c048c0;\n color: #fcff89;\n}\n.clustal .C {\n background-color: #f08080;\n}\n.clustal .G {\n background-color: #f09048;\n}\n.clustal .Y\n.clustal .H {\n background-color: #15a4a4;\n}\n.clustal .P {\n background-color: #ffff00;\n}\n.clustal .B,\n.clustal .X,\n.clustal .Z {\n background-color: #ffffff;\n}\n.clustal .gap {\n color: #ccc;\n}\n.zappo {\n white-space: nowrap;\n font-family: monospace;\n height: 18px;\n font-size: 12px;\n}\n.zappo .A,\n.zappo .I,\n.zappo .L,\n.zappo .M,\n.zappo .V {\n background-color: #ffafaf;\n}\n.zappo .R,\n.zappo .H,\n.zappo .K {\n background-color: #6464ff;\n color: #fcff89;\n}\n.zappo .N,\n.zappo .Q,\n.zappo .S,\n.zappo .T {\n background-color: #00ff00;\n}\n.zappo .D,\n.zappo .E {\n background-color: #ff0000;\n}\n.zappo .C {\n background-color: #ffff00;\n}\n.zappo .G,\n.zappo .P {\n background-color: #ff00ff;\n color: #fcff89;\n}\n.zappo .F,\n.zappo .W,\n.zappo .Y {\n background-color: #ffc800;\n}\n.zappo .B,\n.zappo .X,\n.zappo .Z {\n background-color: #ffffff;\n}\n.zappo .gap {\n color: #ccc;\n}\n.taylor {\n white-space: nowrap;\n font-family: monospace;\n height: 18px;\n font-size: 12px;\n}\n.taylor .A {\n background-color: #ccff00;\n}\n.taylor .R {\n background-color: #0000ff;\n color: #fcff89;\n}\n.taylor .N {\n background-color: #cc00ff;\n color: #fcff89;\n}\n.taylor .D {\n background-color: #ff0000;\n color: #fcff89;\n}\n.taylor .C {\n background-color: #ffff00;\n}\n.taylor .Q {\n background-color: #ff00cc;\n}\n.taylor .E {\n background-color: #ff0066;\n color: #fcff89;\n}\n.taylor .G {\n background-color: #ff9900;\n}\n.taylor .H {\n background-color: #0066ff;\n color: #fcff89;\n}\n.taylor .I {\n background-color: #66ff00;\n}\n.taylor .L {\n background-color: #33ff00;\n}\n.taylor .K {\n background-color: #6600ff;\n color: #fcff89;\n}\n.taylor .M {\n background-color: #00ff00;\n}\n.taylor .F {\n background-color: #00ff66;\n}\n.taylor .P {\n background-color: #ffcc00;\n}\n.taylor .S {\n background-color: #ff3300;\n color: #fcff89;\n}\n.taylor .T {\n background-color: #ff6600;\n}\n.taylor .W {\n background-color: #00ccff;\n}\n.taylor .Y {\n background-color: #00ffcc;\n}\n.taylor .V {\n background-color: #99ff00;\n}\n.taylor .B,\n.taylor .X,\n.taylor .Z {\n background-color: #ffffff;\n}\n.taylor .gap {\n color: #ccc;\n}\n.hydrophobicity {\n white-space: nowrap;\n font-family: monospace;\n height: 18px;\n font-size: 12px;\n color: #fcff89;\n}\n.hydrophobicity .A {\n background-color: #ad0052;\n}\n.hydrophobicity .R,\n.hydrophobicity .K {\n background-color: #0000ff;\n}\n.hydrophobicity .N,\n.hydrophobicity .D,\n.hydrophobicity .Q,\n.hydrophobicity .E,\n.hydrophobicity .B,\n.hydrophobicity .Z {\n background-color: #0c00f3;\n}\n.hydrophobicity .C {\n background-color: #c2003d;\n}\n.hydrophobicity .G {\n background-color: #6a0095;\n}\n.hydrophobicity .H {\n background-color: #1500ea;\n}\n.hydrophobicity .L {\n background-color: #ea0015;\n}\n.hydrophobicity .M {\n background-color: #b0004f;\n}\n.hydrophobicity .F {\n background-color: #cb0034;\n}\n.hydrophobicity .P {\n background-color: #4600b9;\n}\n.hydrophobicity .S {\n background-color: #5e00a1;\n}\n.hydrophobicity .T {\n background-color: #61009e;\n}\n.hydrophobicity .W {\n background-color: #5b00a4;\n}\n.hydrophobicity .Y {\n background-color: #4f00b0;\n}\n.hydrophobicity .V {\n background-color: #f60009;\n}\n.hydrophobicity .X {\n background-color: #680097;\n}\n.hydrophobicity .gap {\n color: #ccc;\n}\n.helix_propensity {\n white-space: nowrap;\n font-family: monospace;\n height: 18px;\n font-size: 12px;\n}\n.helix_propensity .A {\n background-color: #e718e7;\n}\n.helix_propensity .R {\n background-color: #6f906f;\n}\n.helix_propensity .N {\n background-color: #1be41b;\n}\n.helix_propensity .D {\n background-color: #778877;\n}\n.helix_propensity .C {\n background-color: #23dc23;\n}\n.helix_propensity .Q {\n background-color: #926d92;\n}\n.helix_propensity .E {\n background-color: #ff00ff;\n}\n.helix_propensity .G {\n background-color: #00ff00;\n}\n.helix_propensity .H {\n background-color: #758a75;\n}\n.helix_propensity .I {\n background-color: #8a758a;\n}\n.helix_propensity .L {\n background-color: #ae51ae;\n}\n.helix_propensity .K {\n background-color: #a05fa0;\n}\n.helix_propensity .M {\n background-color: #ef10ef;\n}\n.helix_propensity .F {\n background-color: #986798;\n}\n.helix_propensity .P {\n background-color: #00ff00;\n}\n.helix_propensity .S {\n background-color: #36c936;\n}\n.helix_propensity .T {\n background-color: #47b847;\n}\n.helix_propensity .W {\n background-color: #8a758a;\n}\n.helix_propensity .Y {\n background-color: #21de21;\n}\n.helix_propensity .V {\n background-color: #857a85;\n}\n.helix_propensity .B {\n background-color: #49b649;\n}\n.helix_propensity .X {\n background-color: #758a75;\n}\n.helix_propensity .Z {\n background-color: #c936c9;\n}\n.helix_propensity .gap {\n color: #ccc;\n}\n.strand_propensity {\n white-space: nowrap;\n font-family: monospace;\n height: 18px;\n font-size: 12px;\n}\n.strand_propensity .A {\n background-color: #5858a7;\n}\n.strand_propensity .R {\n background-color: #6b6b94;\n}\n.strand_propensity .N {\n background-color: #64649b;\n}\n.strand_propensity .D {\n background-color: #2121de;\n}\n.strand_propensity .C {\n background-color: #9d9d62;\n}\n.strand_propensity .Q {\n background-color: #8c8c73;\n}\n.strand_propensity .E {\n background-color: #0000ff;\n}\n.strand_propensity .G {\n background-color: #4949b6;\n}\n.strand_propensity .H {\n background-color: #60609f;\n}\n.strand_propensity .I {\n background-color: #ecec13;\n}\n.strand_propensity .L {\n background-color: #b2b24d;\n}\n.strand_propensity .K {\n background-color: #4747b8;\n}\n.strand_propensity .M {\n background-color: #82827d;\n}\n.strand_propensity .F {\n background-color: #c2c23d;\n}\n.strand_propensity .P {\n background-color: #2323dc;\n}\n.strand_propensity .S {\n background-color: #4949b6;\n}\n.strand_propensity .T {\n background-color: #9d9d62;\n}\n.strand_propensity .W {\n background-color: #c0c03f;\n}\n.strand_propensity .Y {\n background-color: #d3d32c;\n}\n.strand_propensity .V {\n background-color: #ffff00;\n}\n.strand_propensity .B {\n background-color: #4343bc;\n}\n.strand_propensity .X {\n background-color: #797986;\n}\n.strand_propensity .Z {\n background-color: #4747b8;\n}\n.strand_propensity .A,\n.strand_propensity .R,\n.strand_propensity .N,\n.strand_propensity .D,\n.strand_propensity .E,\n.strand_propensity .G,\n.strand_propensity .H,\n.strand_propensity .K,\n.strand_propensity .P,\n.strand_propensity .S,\n.strand_propensity .B,\n.strand_propensity .Z {\n color: #fcff89;\n}\n.strand_propensity .gap {\n color: #ccc;\n}\n.turn_propensity {\n white-space: nowrap;\n font-family: monospace;\n height: 18px;\n font-size: 12px;\n}\n.turn_propensity .gap {\n color: #ccc;\n}\n.turn_propensity .A {\n background-color: #2cd3d3;\n}\n.turn_propensity .R {\n background-color: #708f8f;\n}\n.turn_propensity .N {\n background-color: #ff0000;\n}\n.turn_propensity .D {\n background-color: #e81717;\n}\n.turn_propensity .C {\n background-color: #a85757;\n}\n.turn_propensity .Q {\n background-color: #3fc0c0;\n}\n.turn_propensity .E {\n background-color: #778888;\n}\n.turn_propensity .G {\n background-color: #ff0000;\n}\n.turn_propensity .H {\n background-color: #708f8f;\n}\n.turn_propensity .I {\n background-color: #00ffff;\n}\n.turn_propensity .L {\n background-color: #1ce3e3;\n}\n.turn_propensity .K {\n background-color: #7e8181;\n}\n.turn_propensity .M {\n background-color: #1ee1e1;\n}\n.turn_propensity .F {\n background-color: #1ee1e1;\n}\n.turn_propensity .P {\n background-color: #f60909;\n}\n.turn_propensity .S {\n background-color: #e11e1e;\n}\n.turn_propensity .T {\n background-color: #738c8c;\n}\n.turn_propensity .W {\n background-color: #738c8c;\n}\n.turn_propensity .Y {\n background-color: #9d6262;\n}\n.turn_propensity .V {\n background-color: #07f8f8;\n}\n.turn_propensity .B {\n background-color: #f30c0c;\n}\n.turn_propensity .X {\n background-color: #7c8383;\n}\n.turn_propensity .Z {\n background-color: #5ba4a4;\n}\n.turn_propensity .N,\n.turn_propensity .D,\n.turn_propensity .G,\n.turn_propensity .P,\n.turn_propensity .S,\n.turn_propensity .B {\n color: #fcff89;\n}\n.buried_index {\n white-space: nowrap;\n font-family: monospace;\n height: 18px;\n font-size: 12px;\n}\n.buried_index .gap {\n color: #ccc;\n}\n.buried_index .A {\n background-color: #00a35c;\n}\n.buried_index .R {\n background-color: #00fc03;\n}\n.buried_index .N {\n background-color: #00eb14;\n}\n.buried_index .D {\n background-color: #00eb14;\n}\n.buried_index .C {\n background-color: #0000ff;\n}\n.buried_index .Q {\n background-color: #00f10e;\n}\n.buried_index .E {\n background-color: #00f10e;\n}\n.buried_index .G {\n background-color: #009d62;\n}\n.buried_index .H {\n background-color: #00d52a;\n}\n.buried_index .I {\n background-color: #0054ab;\n}\n.buried_index .L {\n background-color: #007b84;\n}\n.buried_index .K {\n background-color: #00ff00;\n}\n.buried_index .M {\n background-color: #009768;\n}\n.buried_index .F {\n background-color: #008778;\n}\n.buried_index .P {\n background-color: #00e01f;\n}\n.buried_index .S {\n background-color: #00d52a;\n}\n.buried_index .T {\n background-color: #00db24;\n}\n.buried_index .W {\n background-color: #00a857;\n}\n.buried_index .Y {\n background-color: #00e619;\n}\n.buried_index .V {\n background-color: #005fa0;\n}\n.buried_index .B {\n background-color: #00eb14;\n}\n.buried_index .X {\n background-color: #00b649;\n}\n.buried_index .Z {\n background-color: #00f10e;\n}\n.buried_index .C,\n.buried_index .I,\n.buried_index .V {\n color: #fcff89;\n}\n","@transition_time: 20ms;\n\n/* see src/components/Edge.js#HOVER_SCALE_FACTOR (currently line 8) */\n@hover_scale_factor: 2;\n@hover_stroke_width: 2;\n@collapsed_node_stroke_width: 1;\n\n@default_node_fill: #fff;\n@default_node_stroke: #777;\n\n@ortholog_stroke_color: orange;\n@paralog_stroke_color: green;\n@representative_fill_color: @ortholog_stroke_color;\n@self_color: red;\n\n@speciation_color: #000080;\n@duplication_color: #cd0000;\n\n@font_size: 11px;\n@font_weight_highlight: bolder;\n\n@invisible: 0;\n@visible: 1;\n\n.display-mode {\n .btn-toolbar {\n position: absolute;\n padding-left: 10px\n }\n}\n.tooltip-inner {\n max-width : 400px;\n}\n.genetree-vis {\n .node, .edge {\n cursor: pointer;\n }\n\n .tree-wrapper {\n /* transitions for mouse hover, etc, interactions */\n * {\n transition: all @transition_time ease-in-out;\n }\n\n /* transitions for expanding/contracting clades */\n .clade {\n transition: transform @transition_time ease-in-out;\n\n .edge-rect {\n transition: scaleY @transition_time ease-in-out, scaleX @transition_time ease-in-out, transform @transition_time ease-in-out;\n }\n }\n }\n\n .interaction-helper {\n opacity: @invisible;\n }\n\n .node circle {\n stroke: @default_node_stroke;\n fill: @default_node_fill;\n }\n\n .speciation rect {\n fill: @speciation_color;\n }\n\n .duplication rect {\n fill: @duplication_color;\n }\n\n .node:hover, .edge:hover {\n .internal,\n .gene circle,\n ~ .clade .node rect,\n + .node rect {\n transform: scale(@hover_scale_factor);\n }\n\n ~ .clade .interaction-rect {\n opacity: @visible;\n fill-opacity: @visible;\n }\n\n ~ .clade circle,\n + .node circle,\n .collapsed path,\n ~ .clade .collapsed path,\n + .node .collapsed path {\n stroke-width: @hover_stroke_width;\n }\n\n ~ .clade text, text {\n font-weight: @font_weight_highlight;\n }\n }\n\n .node {\n .gene.ortholog_one2one circle,\n .gene.ortholog_one2many circle,\n .gene.ortholog_many2many circle {\n stroke: @ortholog_stroke_color;\n }\n\n .gene.within_species_paralog circle {\n stroke: @paralog_stroke_color;\n }\n\n .gene.self {\n circle {\n stroke: @self_color;\n fill: @self_color;\n }\n text {\n font-weight: @font_weight_highlight;\n }\n }\n\n .gene.representative circle {\n stroke: @ortholog_stroke_color;\n fill: @representative_fill_color;\n }\n\n text {\n font-size: @font_size;\n fill-opacity: @visible;\n text-anchor: start;\n }\n }\n\n .collapsed {\n path {\n stroke-width: @collapsed_node_stroke_width;\n }\n }\n\n .domains rect {\n cursor: pointer;\n stroke-opacity: 0\n }\n\n .domains rect:hover {\n cursor: pointer;\n stroke-opacity: 1.0\n }\n @transition_time: 20ms;\n\n /* see src/components/Edge.js#HOVER_SCALE_FACTOR (currently line 8) */\n @hover_scale_factor: 2;\n @hover_stroke_width: 2;\n @collapsed_node_stroke_width: 1;\n\n @default_node_fill: #fff;\n @default_node_stroke: #777;\n\n @ortholog_stroke_color: orange;\n @paralog_stroke_color: green;\n @representative_fill_color: @ortholog_stroke_color;\n @self_color: red;\n\n @speciation_color: #000080;\n @duplication_color: #cd0000;\n\n @font_size: 11px;\n @font_weight_highlight: bolder;\n\n @invisible: 0;\n @visible: 1;\n\n}\n\n.popover-title .tooltip-title-button {\n margin-top: -4px !important;\n margin-right: 4px !important;\n}\n\n.msa-slider {\n position: relative;\n padding-top: 10px;\n padding-bottom: 0px;\n margin-bottom: -10px;\n}\n\n.resize-drag {\n background: rgba(0, 0, 0, 0.0);\n border: 4px solid #7c8383;\n color: red;\n font-size: 1px;\n font-family: sans-serif;\n border-radius: 8px;\n\n /* This makes things *much* easier */\n box-sizing: border-box;\n}\n\n.resize-container {\n width: 100%;\n height: 100%;\n}\n",null,"/*\n\n<classNamePrefix>-root\n\nThe outer container\n\n*/\n.tree-view-root {\n}\n\n/*\n\n<classNamePrefix>-root\n\nThe outer container for a single node\n\n*/\n.tree-view-node {\n margin-left: 10px;\n}\n\n\n/*\n\n<classNamePrefix>-node-collapse-toggle.collapse-spacer\n\nUsed to provide spacing when a parent node has no children\n\n*/\n.tree-view-node-collapse-toggle.collapse-spacer {\n width: 14px;\n display: inline-block;\n}\n\n/*\n<classNamePrefix>-node-collapse-toggle.<expandIconClass>\n\nThe class to use for the icon that expands a collapsed parent node\n\n*/\n\n\n/*\n\n<classNamePrefix>-node-collapse-toggle.<collapseIconClass>\n\nThe class to use for the icon that collapses an expanded parent node\n\n*/\n\n.tree-view-node-collapse-toggle {\n margin-right: 3px;\n width: 14px;\n}\n\n/*\n\n<classNamePrefix>-node-label\n\n*/\n.tree-view-node-label {\n font-size: smaller;\n margin-left: 3px;\n padding: 1px;\n border: 1px solid #fff;\n}\n\n/*\n\n<classNamePrefix>-node-label.selected\n\n*/\n.tree-view-node-label.selected {\n border: 1px solid #003f81;\n border-radius: 3px;\n background-color: #808080;\n}\n\n/*\n\n<classNamePrefix>-node-checkbox\n\nThe class for a node checkbox\n\n*/\n\n.tree-view-node-checkbox {}\n\n/*\n\n<classNamePrefix>-node-children\n\nThe class for the element that wraps a nodes children (if any exist)\n\n*/\n\n.tree-view-node-children {}\n\n",".button-like-link {\n display: inline-block;\n padding: 0;\n background-color: #fff0;\n color: #007bff;\n text-decoration: underline;\n border: none;\n cursor: pointer;\n}\n","/* styles.css */\n.fasta-container {\n position: relative;\n padding: 2ch;\n background-color: #fcfffd;\n border-color: #557b74;\n border-style: dashed;\n line-height: 0.925em;\n /*margin: auto; !* Center the container *!*/\n}\n.styled-span {\n display: flex;\n align-items: center;\n text-align: center;\n}\n.vertical-line {\n flex-grow: 1;\n height: 20px;\n background-color: black;\n}\n.horizontal-line {\n width: 57px;\n height: 3px;\n background-color: black;\n margin: 0 0px;\n}\ncode.fasta {\n white-space: pre-wrap;\n color: #595959;\n}\n.header {\n color: black;\n}\n.upstream {\n color: #80a0a0;\n}\n.downstream {\n color: #80a0a0;\n}\n.intron {\n color: #aaaaaa;\n}\n.utr5 {\n background-color: #aaccaf;\n}\n.utr5-other {\n background-color: #cfe1d2;\n}\n.cds {\n background-color: #a7b4d3;\n}\n.cds-other {\n background-color: #d0d8e6;\n}\n.utr3 {\n background-color: #c5a3bf;\n}\n.utr3-other {\n background-color: #dcc9d9;\n}\n.square-utr5 {\n width: 20px;\n height: 20px;\n background: linear-gradient(to bottom right, #aaccaf 0%, #aaccaf 50%, #cfe1d2 50%, #cfe1d2 100%);\n}\n.square-cds {\n width: 20px;\n height: 20px;\n background: linear-gradient(to bottom right, #a7b4d3 0%, #a7b4d3 50%, #d0d8e6 50%, #d0d8e6 100%);\n}\n.square-utr3 {\n width: 20px;\n height: 20px;\n background: linear-gradient(to bottom right, #c5a3bf 0%, #c5a3bf 50%, #dcc9d9 50%, #dcc9d9 100%);\n}\n\n.reverse-slide {\n direction: rtl;\n}\n.fasta-key {\n position: absolute;\n top: 9px;\n right: 40px;\n background: none;\n border: none;\n cursor: default;\n font-family: monospace;\n font-size: 11pt;\n color: #555;\n}\n.copy-button {\n position: absolute;\n top: 3px;\n right: -5px;\n background: none;\n border: none;\n cursor: pointer;\n font-size: 1.5rem;\n color: #555;\n}\n.notification {\n position: absolute;\n top: 0;\n right: 0;\n background-color: #050505;\n color: #fff;\n padding: 5px;\n z-index: 999;\n font-weight: bold;\n font-style: italic;\n font-size: smaller;\n}",".taxogenomic-vis {\n @import 'taxonomy';\n}",".accordion-button {\n padding:0.4rem!important;\n}\n.accordion-button:hover {\n background-color: #dbe8f3;\n}"],"names":[],"version":3,"file":"index.css.map"}
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\"5abb1db407612521\";\n@import \"1caf78728b2f5137\";\n@import \"2166a150e9f31214\";\n@import \"938d6be3f57789df\";\n@import \"aa165d1be5d1c755\";\n@import \"996096824b9f7d5a\";\n@import \"41a1dcf3bc8b5377\";\n@import \"c52016833805a9f9\";\n@import \"6f643ac0480217ea\";\n@import \"c6576577b854e1eb\";\n",".gramene-sidebar {\n position: fixed;\n background-color: #557b74;\n padding-left: 8px;\n padding-right: 8px;\n padding-bottom: 8px;\n width: 250px;\n}\n.sorghumbase-sidebar {\n position: fixed;\n background-color: #a03e34;\n padding-left: 8px;\n padding-right: 8px;\n padding-bottom: 8px;\n width: 250px;\n}\n.gramene-auth-container {\n background-color: #fff3a9;\n padding-left: 4px;\n padding-bottom: 4px;\n}\n.sorghumbase-auth-container {\n background-color: #fff3a9;\n padding-left: 4px;\n padding-bottom: 4px;\n}\n.gramene-filter-container {\n background-color: #fff3a9;\n padding-left: 4px;\n padding-bottom: 4px;\n}\n.sorghumbase-filter-container {\n background-color: #fff3a9;\n padding-left: 4px;\n padding-bottom: 4px;\n}\n.gramene-filter {\n padding-left: 4px;\n padding-right: 4px;\n padding-bottom: 4px;\n background-color: white;\n font-size: small;\n}\n.gramene-filter span:hover {\n font-weight:bolder;\n}\n.gramene-filter-AND {\n background-color: #ffcd82;\n}\n.gramene-filter-OR {\n background-color: #c5eeb9;\n}\n.gramene-filter-NOT {\n border-left-color: #ff5354;\n border-left-style: inset;\n border-left-width: 4px;\n padding-left: 4px;\n}\n.gramene-filter-operation {\n text-align: center;\n font-style: italic;\n}\n.gramene-filter-marked {\n font-weight: bolder;\n /*background-color: #feff96;*/\n}\n.gramene-filter-menu ul {\n border-top-style: solid;\n border-top-width: 2px;\n padding-left: 0;\n}\n.gramene-filter-menu li {\n display: block;\n cursor: pointer;\n padding-left: 15px;\n}\n.gramene-filter-menu li:hover {\n background-color: #feff96;\n}\n\n.gramene-view-header {\n width: 100%;\n display: flex;\n flex-wrap: nowrap;\n justify-content: space-evenly;\n font-size: larger;\n font-weight: bold;\n background-color: #fff3a96e;\n border-top: solid;\n border-top-color: #557b74;\n color: #a03e34;\n}\n\n.gramene-view-container {\n background-color: #fff3a9;\n padding-left: 4px;\n padding-right: 4px;\n padding-bottom: 4px;\n}\n.gramene-view {\n padding-left: 0px;\n padding-right: 10px;\n margin-bottom: 0;\n background-color: white;\n}\n.gramene-view-span-on {\n padding-left: 5px;\n cursor: pointer;\n vertical-align: text-bottom;\n color: #a03e34;\n}\n.gramene-view-span-off {\n padding-left: 5px;\n cursor: pointer;\n vertical-align: text-bottom;\n color: darkgray;\n}\n.gramene-view li {\n display: block;\n cursor: pointer;\n padding-left: 5px;\n border-left-style: inset;\n border-left-width: 8px;\n margin-bottom: 2px;\n}\n\n.gramene-view-on {\n border-left-color: #40a0ff;\n font-weight: bold;\n}\n.gramene-view-off {\n border-left-color: #ff6d68;\n color: grey;\n}\n.gramene-view-disabled {\n color: darkgray;\n border-left-color: #efefef;\n cursor: default!important;\n}\n#gramene-suggestion button {\n border-radius: .6rem;\n line-height: 1;\n}\n#gramene-suggestion button:focus {\n color: #fff;\n background-color: #6c757d;\n border-color: #6c757d;\n}\n\n",".visible-detail {\n border: 1px solid #557B74;\n padding: 6px 12px;\n}\n.detail {\n margin-right: auto;\n margin-left: auto;\n padding-left: 15px;\n padding-right: 15px;\n}\n.table {\n width: 100%;\n max-width: 100%;\n}\n.xrefs {\n border-collapse: collapse;\n border-spacing: 0;\n border-color: grey;\n table-layout: fixed;\n}\n.xref-name-col {\n width: 20%;\n}\n.xref-value-col {\n width: 80%;\n}\n.xref-80-col {\n width: 80%;\n}\n.xref-70-col {\n width: 70%;\n}\n.xref-10-col {\n width: 10%;\n}\n.xref-id-list {\n padding-left: 0;\n list-style: none;\n}\n.result-gene {\n padding: 0.2em;\n border: 5px solid white;\n}\n.result-gene:hover {\n border-color: antiquewhite;\n}\n.gene-title {\n /*padding-top:0.5em;*/\n}\n.gene-id {\n /*white-space: nowrap;*/\n color: black;\n}\n.gene-name {\n color: #557B74;\n margin-bottom: 0;\n}\n.gene-description {\n margin-bottom: 0;\n}\n.gene-species {\n white-space: nowrap;\n font-style: italic;\n font-size:small;\n font-weight: bold;\n}\n.gene-synonyms {\n font-size: small;\n}\n.gene-extras {\n float: right;\n border: dashed 1px blue;\n}\n.gene-panlink {\n float:right;\n}\n.gene-panlink img {\n height: 60px;\n width: auto;\n vertical-align: top;\n}\n.suggestion-panlink img {\n height: 60px;\n width: auto;\n float: left;\n}\n.gene-curation {\n float:right;\n margin-top: 20px;\n border: 1px solid grey;\n}\n.gene-curation span {\n width: 20px;\n display: inline-block;\n color: white;\n text-align: center;\n}\n.gene-curation .okay {\n background-color: #0c00f3;\n}\n.gene-curation .flagged {\n background-color: darkorange;\n}\n.gene-detail-tabs {\n display: flex;\n flex-wrap: wrap;\n white-space: nowrap;\n width: 80em;\n}\n.gene-detail-tab-closed {\n color: darkgreen;\n cursor: pointer;\n /*background-color: lightgray;*/\n}\n.gene-detail-tab-disabled {\n /*color: white;*/\n /*background-color: lightgray;*/\n color: lightgray;\n cursor: not-allowed;\n}\n.gene-detail-tab-empty {\n color: darkgreen;\n cursor: pointer;\n font-style: oblique;\n /*background-color: lightgray;*/\n}\n.gene-detail-tab-empty::before {\n content: \"Add \";\n}\n.gene-detail-tab-expanded {\n color: white;\n background-color: #557B74;\n cursor: pointer;\n}\n.result-gene-summary {\n display: flex;\n flex-flow: row nowrap;\n justify-content: flex-start;\n}\n.result-gene-summary .species-name {\n white-space: nowrap;\n font-style: italic;\n}\n.result-gene-title-body {\n flex: 1 1 auto;\n width: 1036px;\n}\n.model-ortholog, .closest-ortholog, .gene-summary-tair {\n cursor: pointer;\n flex: 1 1 auto;\n width: 500px;\n font-size: smaller;\n margin-top: 10px;\n padding: 0 1rem;\n margin-left: 1rem;\n border: 1px solid darkorange;\n}\n\n.model-ortholog {\n border: 1px dotted darkorange;\n}\n.closest-ortholog {\n border: 1px dotted darkgreen;\n}\n\n.gene-summary-tair {\n border: 1px dotted darkblue;\n}\n.gene-summary-tair .rest {\n display: none;\n}\n\n.gene-summary-tair:hover .rest {\n display: inline;\n}\n.gene-summary-tair:focus .rest {\n display: inline;\n}\n.gene-summary-tair:hover .ellipsis {\n display: none;\n}\n.gene-summary-tair:focus .ellipsis {\n display: none;\n}\n\n/* this is the \"title\" of the closest ortholog box */\n.closest-ortholog::before,\n.model-ortholog::before,\n.gene-summary-tair::before {\n position: relative;\n float: right;\n margin-top: -12px;\n margin-right: 6px;\n border: dotted 1px;\n padding: 0 1rem;\n background: #fff;\n}\n\n.model-ortholog::before {\n content: \"Model Species Homolog\";\n color: orange;\n}\n.closest-ortholog::before {\n content: \"Closest Annotated Homolog\";\n color: darkgreen;\n}\n\n/* this is the \"title\" of the closest ortholog box */\n.gene-summary-tair::before {\n content: \"TAIR Curated Description\";\n color: darkblue;\n}\n\n.rep-identity {\n float: right;\n padding-right: 10px;\n padding-top: 5px;\n font-style: italic;\n}\n.rep-identity::after {\n content: \"% identity\";\n}\n.eFP::before {\n content: url(\"../../static/images/BAR-logo.png\");\n padding-right:5px;\n position: relative;\n top: 5px;\n}\n.eFP::after {\n content: 'New!';\n color: red;\n padding-left:2px;\n font-weight: bold;\n font-style: italic;\n font-size: x-small;\n line-height: normal;\n vertical-align: super;\n}\n.gxa::before {\n content: url(\"../../static/images/expression-atlas-logo.png\");\n padding-right:5px;\n position: relative;\n top: 5px;\n}\n.gene-search-pic-sugg {\n width: 100%;\n height: 200px;\n background: url(\"../../static/images/suggestions.png\");\n background-size: contain;\n background-repeat: no-repeat;\n}\n.gene-search-pic-results {\n width: 100%;\n height: 200px;\n background: url(\"../../static/images/results.png\");\n background-size: contain;\n background-repeat: no-repeat;\n}\n.gene-search-pic-genetree {\n width: 100%;\n height: 200px;\n background: url(\"../../static/images/genetree.png\");\n background-size: contain;\n background-repeat: no-repeat;\n}\n",".MSAlignments-wrapper {\n overflow-x: scroll;\n overflow-y: hidden;\n}\n.clustal {\n white-space: nowrap;\n font-family: monospace;\n height: 18px;\n font-size: 12px;\n}\n.clustal .A,\n.clustal .I,\n.clustal .L,\n.clustal .M,\n.clustal .F,\n.clustal .W,\n.clustal .V {\n background-color: #80a0f0;\n}\n.clustal .R,\n.clustal .K {\n background-color: #f01505;\n color: #fcff89;\n}\n.clustal .N,\n.clustal .Q,\n.clustal .S,\n.clustal .T {\n background-color: #00ff00;\n}\n.clustal .D,\n.clustal .E {\n background-color: #c048c0;\n color: #fcff89;\n}\n.clustal .C {\n background-color: #f08080;\n}\n.clustal .G {\n background-color: #f09048;\n}\n.clustal .Y\n.clustal .H {\n background-color: #15a4a4;\n}\n.clustal .P {\n background-color: #ffff00;\n}\n.clustal .B,\n.clustal .X,\n.clustal .Z {\n background-color: #ffffff;\n}\n.clustal .gap {\n color: #ccc;\n}\n.zappo {\n white-space: nowrap;\n font-family: monospace;\n height: 18px;\n font-size: 12px;\n}\n.zappo .A,\n.zappo .I,\n.zappo .L,\n.zappo .M,\n.zappo .V {\n background-color: #ffafaf;\n}\n.zappo .R,\n.zappo .H,\n.zappo .K {\n background-color: #6464ff;\n color: #fcff89;\n}\n.zappo .N,\n.zappo .Q,\n.zappo .S,\n.zappo .T {\n background-color: #00ff00;\n}\n.zappo .D,\n.zappo .E {\n background-color: #ff0000;\n}\n.zappo .C {\n background-color: #ffff00;\n}\n.zappo .G,\n.zappo .P {\n background-color: #ff00ff;\n color: #fcff89;\n}\n.zappo .F,\n.zappo .W,\n.zappo .Y {\n background-color: #ffc800;\n}\n.zappo .B,\n.zappo .X,\n.zappo .Z {\n background-color: #ffffff;\n}\n.zappo .gap {\n color: #ccc;\n}\n.taylor {\n white-space: nowrap;\n font-family: monospace;\n height: 18px;\n font-size: 12px;\n}\n.taylor .A {\n background-color: #ccff00;\n}\n.taylor .R {\n background-color: #0000ff;\n color: #fcff89;\n}\n.taylor .N {\n background-color: #cc00ff;\n color: #fcff89;\n}\n.taylor .D {\n background-color: #ff0000;\n color: #fcff89;\n}\n.taylor .C {\n background-color: #ffff00;\n}\n.taylor .Q {\n background-color: #ff00cc;\n}\n.taylor .E {\n background-color: #ff0066;\n color: #fcff89;\n}\n.taylor .G {\n background-color: #ff9900;\n}\n.taylor .H {\n background-color: #0066ff;\n color: #fcff89;\n}\n.taylor .I {\n background-color: #66ff00;\n}\n.taylor .L {\n background-color: #33ff00;\n}\n.taylor .K {\n background-color: #6600ff;\n color: #fcff89;\n}\n.taylor .M {\n background-color: #00ff00;\n}\n.taylor .F {\n background-color: #00ff66;\n}\n.taylor .P {\n background-color: #ffcc00;\n}\n.taylor .S {\n background-color: #ff3300;\n color: #fcff89;\n}\n.taylor .T {\n background-color: #ff6600;\n}\n.taylor .W {\n background-color: #00ccff;\n}\n.taylor .Y {\n background-color: #00ffcc;\n}\n.taylor .V {\n background-color: #99ff00;\n}\n.taylor .B,\n.taylor .X,\n.taylor .Z {\n background-color: #ffffff;\n}\n.taylor .gap {\n color: #ccc;\n}\n.hydrophobicity {\n white-space: nowrap;\n font-family: monospace;\n height: 18px;\n font-size: 12px;\n color: #fcff89;\n}\n.hydrophobicity .A {\n background-color: #ad0052;\n}\n.hydrophobicity .R,\n.hydrophobicity .K {\n background-color: #0000ff;\n}\n.hydrophobicity .N,\n.hydrophobicity .D,\n.hydrophobicity .Q,\n.hydrophobicity .E,\n.hydrophobicity .B,\n.hydrophobicity .Z {\n background-color: #0c00f3;\n}\n.hydrophobicity .C {\n background-color: #c2003d;\n}\n.hydrophobicity .G {\n background-color: #6a0095;\n}\n.hydrophobicity .H {\n background-color: #1500ea;\n}\n.hydrophobicity .L {\n background-color: #ea0015;\n}\n.hydrophobicity .M {\n background-color: #b0004f;\n}\n.hydrophobicity .F {\n background-color: #cb0034;\n}\n.hydrophobicity .P {\n background-color: #4600b9;\n}\n.hydrophobicity .S {\n background-color: #5e00a1;\n}\n.hydrophobicity .T {\n background-color: #61009e;\n}\n.hydrophobicity .W {\n background-color: #5b00a4;\n}\n.hydrophobicity .Y {\n background-color: #4f00b0;\n}\n.hydrophobicity .V {\n background-color: #f60009;\n}\n.hydrophobicity .X {\n background-color: #680097;\n}\n.hydrophobicity .gap {\n color: #ccc;\n}\n.helix_propensity {\n white-space: nowrap;\n font-family: monospace;\n height: 18px;\n font-size: 12px;\n}\n.helix_propensity .A {\n background-color: #e718e7;\n}\n.helix_propensity .R {\n background-color: #6f906f;\n}\n.helix_propensity .N {\n background-color: #1be41b;\n}\n.helix_propensity .D {\n background-color: #778877;\n}\n.helix_propensity .C {\n background-color: #23dc23;\n}\n.helix_propensity .Q {\n background-color: #926d92;\n}\n.helix_propensity .E {\n background-color: #ff00ff;\n}\n.helix_propensity .G {\n background-color: #00ff00;\n}\n.helix_propensity .H {\n background-color: #758a75;\n}\n.helix_propensity .I {\n background-color: #8a758a;\n}\n.helix_propensity .L {\n background-color: #ae51ae;\n}\n.helix_propensity .K {\n background-color: #a05fa0;\n}\n.helix_propensity .M {\n background-color: #ef10ef;\n}\n.helix_propensity .F {\n background-color: #986798;\n}\n.helix_propensity .P {\n background-color: #00ff00;\n}\n.helix_propensity .S {\n background-color: #36c936;\n}\n.helix_propensity .T {\n background-color: #47b847;\n}\n.helix_propensity .W {\n background-color: #8a758a;\n}\n.helix_propensity .Y {\n background-color: #21de21;\n}\n.helix_propensity .V {\n background-color: #857a85;\n}\n.helix_propensity .B {\n background-color: #49b649;\n}\n.helix_propensity .X {\n background-color: #758a75;\n}\n.helix_propensity .Z {\n background-color: #c936c9;\n}\n.helix_propensity .gap {\n color: #ccc;\n}\n.strand_propensity {\n white-space: nowrap;\n font-family: monospace;\n height: 18px;\n font-size: 12px;\n}\n.strand_propensity .A {\n background-color: #5858a7;\n}\n.strand_propensity .R {\n background-color: #6b6b94;\n}\n.strand_propensity .N {\n background-color: #64649b;\n}\n.strand_propensity .D {\n background-color: #2121de;\n}\n.strand_propensity .C {\n background-color: #9d9d62;\n}\n.strand_propensity .Q {\n background-color: #8c8c73;\n}\n.strand_propensity .E {\n background-color: #0000ff;\n}\n.strand_propensity .G {\n background-color: #4949b6;\n}\n.strand_propensity .H {\n background-color: #60609f;\n}\n.strand_propensity .I {\n background-color: #ecec13;\n}\n.strand_propensity .L {\n background-color: #b2b24d;\n}\n.strand_propensity .K {\n background-color: #4747b8;\n}\n.strand_propensity .M {\n background-color: #82827d;\n}\n.strand_propensity .F {\n background-color: #c2c23d;\n}\n.strand_propensity .P {\n background-color: #2323dc;\n}\n.strand_propensity .S {\n background-color: #4949b6;\n}\n.strand_propensity .T {\n background-color: #9d9d62;\n}\n.strand_propensity .W {\n background-color: #c0c03f;\n}\n.strand_propensity .Y {\n background-color: #d3d32c;\n}\n.strand_propensity .V {\n background-color: #ffff00;\n}\n.strand_propensity .B {\n background-color: #4343bc;\n}\n.strand_propensity .X {\n background-color: #797986;\n}\n.strand_propensity .Z {\n background-color: #4747b8;\n}\n.strand_propensity .A,\n.strand_propensity .R,\n.strand_propensity .N,\n.strand_propensity .D,\n.strand_propensity .E,\n.strand_propensity .G,\n.strand_propensity .H,\n.strand_propensity .K,\n.strand_propensity .P,\n.strand_propensity .S,\n.strand_propensity .B,\n.strand_propensity .Z {\n color: #fcff89;\n}\n.strand_propensity .gap {\n color: #ccc;\n}\n.turn_propensity {\n white-space: nowrap;\n font-family: monospace;\n height: 18px;\n font-size: 12px;\n}\n.turn_propensity .gap {\n color: #ccc;\n}\n.turn_propensity .A {\n background-color: #2cd3d3;\n}\n.turn_propensity .R {\n background-color: #708f8f;\n}\n.turn_propensity .N {\n background-color: #ff0000;\n}\n.turn_propensity .D {\n background-color: #e81717;\n}\n.turn_propensity .C {\n background-color: #a85757;\n}\n.turn_propensity .Q {\n background-color: #3fc0c0;\n}\n.turn_propensity .E {\n background-color: #778888;\n}\n.turn_propensity .G {\n background-color: #ff0000;\n}\n.turn_propensity .H {\n background-color: #708f8f;\n}\n.turn_propensity .I {\n background-color: #00ffff;\n}\n.turn_propensity .L {\n background-color: #1ce3e3;\n}\n.turn_propensity .K {\n background-color: #7e8181;\n}\n.turn_propensity .M {\n background-color: #1ee1e1;\n}\n.turn_propensity .F {\n background-color: #1ee1e1;\n}\n.turn_propensity .P {\n background-color: #f60909;\n}\n.turn_propensity .S {\n background-color: #e11e1e;\n}\n.turn_propensity .T {\n background-color: #738c8c;\n}\n.turn_propensity .W {\n background-color: #738c8c;\n}\n.turn_propensity .Y {\n background-color: #9d6262;\n}\n.turn_propensity .V {\n background-color: #07f8f8;\n}\n.turn_propensity .B {\n background-color: #f30c0c;\n}\n.turn_propensity .X {\n background-color: #7c8383;\n}\n.turn_propensity .Z {\n background-color: #5ba4a4;\n}\n.turn_propensity .N,\n.turn_propensity .D,\n.turn_propensity .G,\n.turn_propensity .P,\n.turn_propensity .S,\n.turn_propensity .B {\n color: #fcff89;\n}\n.buried_index {\n white-space: nowrap;\n font-family: monospace;\n height: 18px;\n font-size: 12px;\n}\n.buried_index .gap {\n color: #ccc;\n}\n.buried_index .A {\n background-color: #00a35c;\n}\n.buried_index .R {\n background-color: #00fc03;\n}\n.buried_index .N {\n background-color: #00eb14;\n}\n.buried_index .D {\n background-color: #00eb14;\n}\n.buried_index .C {\n background-color: #0000ff;\n}\n.buried_index .Q {\n background-color: #00f10e;\n}\n.buried_index .E {\n background-color: #00f10e;\n}\n.buried_index .G {\n background-color: #009d62;\n}\n.buried_index .H {\n background-color: #00d52a;\n}\n.buried_index .I {\n background-color: #0054ab;\n}\n.buried_index .L {\n background-color: #007b84;\n}\n.buried_index .K {\n background-color: #00ff00;\n}\n.buried_index .M {\n background-color: #009768;\n}\n.buried_index .F {\n background-color: #008778;\n}\n.buried_index .P {\n background-color: #00e01f;\n}\n.buried_index .S {\n background-color: #00d52a;\n}\n.buried_index .T {\n background-color: #00db24;\n}\n.buried_index .W {\n background-color: #00a857;\n}\n.buried_index .Y {\n background-color: #00e619;\n}\n.buried_index .V {\n background-color: #005fa0;\n}\n.buried_index .B {\n background-color: #00eb14;\n}\n.buried_index .X {\n background-color: #00b649;\n}\n.buried_index .Z {\n background-color: #00f10e;\n}\n.buried_index .C,\n.buried_index .I,\n.buried_index .V {\n color: #fcff89;\n}\n","@transition_time: 20ms;\n\n/* see src/components/Edge.js#HOVER_SCALE_FACTOR (currently line 8) */\n@hover_scale_factor: 2;\n@hover_stroke_width: 2;\n@collapsed_node_stroke_width: 1;\n\n@default_node_fill: #fff;\n@default_node_stroke: #777;\n\n@ortholog_stroke_color: orange;\n@paralog_stroke_color: green;\n@representative_fill_color: @ortholog_stroke_color;\n@self_color: red;\n\n@speciation_color: #000080;\n@duplication_color: #cd0000;\n\n@font_size: 11px;\n@font_weight_highlight: bolder;\n\n@invisible: 0;\n@visible: 1;\n\n.display-mode {\n .btn-toolbar {\n position: absolute;\n padding-left: 10px\n }\n}\n.tooltip-inner {\n max-width : 400px;\n}\n.genetree-vis {\n .node, .edge {\n cursor: pointer;\n }\n\n .tree-wrapper {\n /* transitions for mouse hover, etc, interactions */\n * {\n transition: all @transition_time ease-in-out;\n }\n\n /* transitions for expanding/contracting clades */\n .clade {\n transition: transform @transition_time ease-in-out;\n\n .edge-rect {\n transition: scaleY @transition_time ease-in-out, scaleX @transition_time ease-in-out, transform @transition_time ease-in-out;\n }\n }\n }\n\n .interaction-helper {\n opacity: @invisible;\n }\n\n .node circle {\n stroke: @default_node_stroke;\n fill: @default_node_fill;\n }\n\n .speciation rect {\n fill: @speciation_color;\n }\n\n .duplication rect {\n fill: @duplication_color;\n }\n\n .node:hover, .edge:hover {\n .internal,\n .gene circle,\n ~ .clade .node rect,\n + .node rect {\n transform: scale(@hover_scale_factor);\n }\n\n ~ .clade .interaction-rect {\n opacity: @visible;\n fill-opacity: @visible;\n }\n\n ~ .clade circle,\n + .node circle,\n .collapsed path,\n ~ .clade .collapsed path,\n + .node .collapsed path {\n stroke-width: @hover_stroke_width;\n }\n\n ~ .clade text, text {\n font-weight: @font_weight_highlight;\n }\n }\n\n .node {\n .gene.ortholog_one2one circle,\n .gene.ortholog_one2many circle,\n .gene.ortholog_many2many circle {\n stroke: @ortholog_stroke_color;\n }\n\n .gene.within_species_paralog circle {\n stroke: @paralog_stroke_color;\n }\n\n .gene.self {\n circle {\n stroke: @self_color;\n fill: @self_color;\n }\n text {\n font-weight: @font_weight_highlight;\n }\n }\n\n .gene.representative circle {\n stroke: @ortholog_stroke_color;\n fill: @representative_fill_color;\n }\n\n text {\n font-size: @font_size;\n fill-opacity: @visible;\n text-anchor: start;\n }\n }\n\n .collapsed {\n path {\n stroke-width: @collapsed_node_stroke_width;\n }\n }\n\n .domains rect {\n cursor: pointer;\n stroke-opacity: 0\n }\n\n .domains rect:hover {\n cursor: pointer;\n stroke-opacity: 1.0\n }\n @transition_time: 20ms;\n\n /* see src/components/Edge.js#HOVER_SCALE_FACTOR (currently line 8) */\n @hover_scale_factor: 2;\n @hover_stroke_width: 2;\n @collapsed_node_stroke_width: 1;\n\n @default_node_fill: #fff;\n @default_node_stroke: #777;\n\n @ortholog_stroke_color: orange;\n @paralog_stroke_color: green;\n @representative_fill_color: @ortholog_stroke_color;\n @self_color: red;\n\n @speciation_color: #000080;\n @duplication_color: #cd0000;\n\n @font_size: 11px;\n @font_weight_highlight: bolder;\n\n @invisible: 0;\n @visible: 1;\n\n}\n\n.popover-title .tooltip-title-button {\n margin-top: -4px !important;\n margin-right: 4px !important;\n}\n\n.msa-slider {\n position: relative;\n padding-top: 10px;\n padding-bottom: 0px;\n margin-bottom: -10px;\n}\n\n.resize-drag {\n background: rgba(0, 0, 0, 0.0);\n border: 4px solid #7c8383;\n color: red;\n font-size: 1px;\n font-family: sans-serif;\n border-radius: 8px;\n\n /* This makes things *much* easier */\n box-sizing: border-box;\n}\n\n.resize-container {\n width: 100%;\n height: 100%;\n}\n",null,"/*\n\n<classNamePrefix>-root\n\nThe outer container\n\n*/\n.tree-view-root {\n}\n\n/*\n\n<classNamePrefix>-root\n\nThe outer container for a single node\n\n*/\n.tree-view-node {\n margin-left: 10px;\n}\n\n\n/*\n\n<classNamePrefix>-node-collapse-toggle.collapse-spacer\n\nUsed to provide spacing when a parent node has no children\n\n*/\n.tree-view-node-collapse-toggle.collapse-spacer {\n width: 14px;\n display: inline-block;\n}\n\n/*\n<classNamePrefix>-node-collapse-toggle.<expandIconClass>\n\nThe class to use for the icon that expands a collapsed parent node\n\n*/\n\n\n/*\n\n<classNamePrefix>-node-collapse-toggle.<collapseIconClass>\n\nThe class to use for the icon that collapses an expanded parent node\n\n*/\n\n.tree-view-node-collapse-toggle {\n margin-right: 3px;\n width: 14px;\n}\n\n/*\n\n<classNamePrefix>-node-label\n\n*/\n.tree-view-node-label {\n font-size: smaller;\n margin-left: 3px;\n padding: 1px;\n border: 1px solid #fff;\n}\n\n/*\n\n<classNamePrefix>-node-label.selected\n\n*/\n.tree-view-node-label.selected {\n border: 1px solid #003f81;\n border-radius: 3px;\n background-color: #808080;\n}\n\n/*\n\n<classNamePrefix>-node-checkbox\n\nThe class for a node checkbox\n\n*/\n\n.tree-view-node-checkbox {}\n\n/*\n\n<classNamePrefix>-node-children\n\nThe class for the element that wraps a nodes children (if any exist)\n\n*/\n\n.tree-view-node-children {}\n\n",".button-like-link {\n display: inline-block;\n padding: 0;\n background-color: #fff0;\n color: #007bff;\n text-decoration: underline;\n border: none;\n cursor: pointer;\n}\n","/* styles.css */\n.fasta-container {\n position: relative;\n padding: 2ch;\n background-color: #fcfffd;\n border-color: #557b74;\n border-style: dashed;\n line-height: 0.925em;\n /*margin: auto; !* Center the container *!*/\n}\n.styled-span {\n display: flex;\n align-items: center;\n text-align: center;\n}\n.vertical-line {\n flex-grow: 1;\n height: 20px;\n background-color: black;\n}\n.horizontal-line {\n width: 57px;\n height: 3px;\n background-color: black;\n margin: 0 0px;\n}\ncode.fasta {\n white-space: pre-wrap;\n color: #595959;\n}\n.header {\n color: black;\n}\n.upstream {\n color: #80a0a0;\n}\n.downstream {\n color: #80a0a0;\n}\n.intron {\n color: #aaaaaa;\n}\n.utr5 {\n background-color: #aaccaf;\n}\n.utr5-other {\n background-color: #cfe1d2;\n}\n.cds {\n background-color: #a7b4d3;\n}\n.cds-other {\n background-color: #d0d8e6;\n}\n.utr3 {\n background-color: #c5a3bf;\n}\n.utr3-other {\n background-color: #dcc9d9;\n}\n.square-utr5 {\n width: 20px;\n height: 20px;\n background: linear-gradient(to bottom right, #aaccaf 0%, #aaccaf 50%, #cfe1d2 50%, #cfe1d2 100%);\n}\n.square-cds {\n width: 20px;\n height: 20px;\n background: linear-gradient(to bottom right, #a7b4d3 0%, #a7b4d3 50%, #d0d8e6 50%, #d0d8e6 100%);\n}\n.square-utr3 {\n width: 20px;\n height: 20px;\n background: linear-gradient(to bottom right, #c5a3bf 0%, #c5a3bf 50%, #dcc9d9 50%, #dcc9d9 100%);\n}\n\n.reverse-slide {\n direction: rtl;\n}\n.fasta-key {\n position: absolute;\n top: 9px;\n right: 40px;\n background: none;\n border: none;\n cursor: default;\n font-family: monospace;\n font-size: 11pt;\n color: #555;\n}\n.copy-button {\n position: absolute;\n top: 3px;\n right: -5px;\n background: none;\n border: none;\n cursor: pointer;\n font-size: 1.5rem;\n color: #555;\n}\n.notification {\n position: absolute;\n top: 0;\n right: 0;\n background-color: #050505;\n color: #fff;\n padding: 5px;\n z-index: 999;\n font-weight: bold;\n font-style: italic;\n font-size: smaller;\n}",".taxogenomic-vis {\n @import 'taxonomy';\n}",".accordion-button {\n padding:0.4rem!important;\n}\n.accordion-button:hover {\n background-color: #dbe8f3;\n}"],"names":[],"version":3,"file":"index.css.map"}
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package/dist/index.js
CHANGED
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@@ -1240,6 +1240,29 @@ $af4441dd29af05df$var$grameneFilters.reactGrameneFilters = (0, $gXNCa$reduxbundl
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1240
1240
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actions: actions
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1241
1241
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};
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1242
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}
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if (queryObject.hasOwnProperty('sugg')) {
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const url = new URL(myUrl.href);
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url.search = '';
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return {
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type: 'BATCH_ACTIONS',
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actions: [
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{
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type: 'URL_UPDATED',
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payload: {
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+
url: url.href,
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replace: false
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}
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},
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{
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type: 'GRAMENE_SEARCH_CLEARED'
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},
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{
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type: 'GRAMENE_FILTER_ADDED',
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payload: JSON.parse(queryObject.suggestion)
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|
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+
}
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|
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|
+
]
|
|
1264
|
+
};
|
|
1265
|
+
}
|
|
1243
1266
|
if (queryObject.hasOwnProperty('suggestion')) {
|
|
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1267
|
const url = new URL(myUrl.href);
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|
1245
1268
|
url.search = '';
|
|
@@ -2166,7 +2189,7 @@ const $541b8b0d8c5501d2$var$TryAnotherSite = (props)=>{
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2166
2189
|
const query = props.query;
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|
2167
2190
|
const config = props.config;
|
|
2168
2191
|
let sites = Object.keys(config.panSite);
|
|
2169
|
-
|
|
2192
|
+
return /*#__PURE__*/ (0, $gXNCa$reactjsxruntime.jsxs)("div", {
|
|
2170
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|
children: [
|
|
2171
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|
/*#__PURE__*/ (0, $gXNCa$reactjsxruntime.jsxs)((0, $gXNCa$reactbootstrap.Alert), {
|
|
2172
2195
|
variant: 'info',
|
|
@@ -2184,7 +2207,6 @@ const $541b8b0d8c5501d2$var$TryAnotherSite = (props)=>{
|
|
|
2184
2207
|
}, idx))
|
|
2185
2208
|
]
|
|
2186
2209
|
});
|
|
2187
|
-
return /*#__PURE__*/ (0, $gXNCa$reactjsxruntime.jsx)((0, $gXNCa$reactjsxruntime.Fragment), {});
|
|
2188
2210
|
};
|
|
2189
2211
|
const $541b8b0d8c5501d2$var$Suggestions = (props)=>{
|
|
2190
2212
|
let suggestions = props.grameneSuggestions;
|