gramene-search 1.6.31 → 1.6.32

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "gramene-search",
-  "version": "1.6.31",
+  "version": "1.6.32",
   "description": "search wrapper for gramene",
   "source": "src/index.js",
   "main": "dist/index.js",

package/src/components/results/details/VEP.js

@@ -64,7 +64,7 @@ const AccessionLink = ({germplasm, gene_id}) => {
     );
   }
   if (germplasm.pop_id === '15' && germplasm.stock_center === 'NOT FOUND') {
-    return <a target="_blank" href={ggURL['maizeGDB']}>SNPVersity 2.0</a>
+    return <a target="_blank" href={ggURL['maizeGDB']}>{germplasm.pub_id} (SNPVersity)</a>
   }
   return <span>{germplasm.pub_id}</span>
 }
@@ -123,7 +123,7 @@ function group_germplasm(gene, germplasmLUT, vep_obj) {
   return grouped;
 }
 const THRESHOLD = 5;
-const GridWithGroups = ({groups,gene_id}) => {
+const GridWithGroups = ({groups,gene_id,doGrin}) => {
   const [rowData, setRowData] = useState(groups);
 
   const initialExpanded = {};
@@ -184,11 +184,11 @@ const GridWithGroups = ({groups,gene_id}) => {
         return null;
       }
     },
-    { field: 'accession', headerName: 'Order Germplasm', flex: 1,
+    { field: 'accession', headerName: doGrin ? 'Order Germplasm' : 'Accession', flex: 1,
       headerComponent: (props) => {
         return (
           <div style={{display: 'flex', alignItems: 'center'}}>
-            <i className="fas fa-shopping-cart"></i>&nbsp;
+            {doGrin && <i className="fas fa-shopping-cart">&nbsp;</i>}
             <span>{props.displayName}</span>
           </div>
         );
@@ -273,7 +273,7 @@ const Detail = props => {
       <div >Explore other variants within this gene in the <a target="_blank"
          href={`${props.configuration.ensemblURL}/${gene.system_name}/Gene/Variation_Gene/Image?db=core;g=${props.searchResult.id}`}>
         Variant image</a> page in the Ensembl genome browser.</div>
-      <GridWithGroups groups={...groups} gene_id={gene._id}/>
+      <GridWithGroups groups={...groups} gene_id={gene._id} doGrin={!props.configuration.hasOwnProperty('noGRIN')}/>
     </div>
   } else {
     props.doRequestVEP(gene._id);

package/src/demo.js

@@ -86,13 +86,14 @@ const panSites = [
     id: 'maize',
     name: 'Maize',
     url: 'https://maize-pangenome.gramene.org',
-    ensemblURL: 'https://test.gramene.org',
-    ensemblSite: 'https://test.gramene.org',
+    ensemblURL: 'https://maize-pangenome-ensembl.gramene.org',
+    ensemblSite: 'https://maize-pangenome-ensembl.gramene.org',
     ensemblRest: 'https://data.gramene.org/pansite-ensembl-108',
-    grameneData: 'https://data.sorghumbase.org/auth_testing',
+    grameneData: 'https://data.gramene.org/maize_v5',
     targetTaxonId: 4577,
     ga: "G-Y7ZYG1R8QT",
     showViews: true,
+    noGRIN: true,
     not_downtime: 'The search interface will be undergoing maintenance on Tuesday, July 20 from 3:00 - 4:00 PM EDT',
     details: {
       sequences: true,