gramene-search 1.6.1 → 1.6.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/.parcel-cache/4987902b3f9787cc-BundleGraph-0 +0 -0
- package/.parcel-cache/lock.mdb +0 -0
- package/.parcel-cache/requestGraph-nodes-0-369948a06d23ec44-0 +0 -0
- package/.parcel-cache/snapshot-369948a06d23ec44.txt +2 -2
- package/package.json +2 -2
- package/dist/BAR-logo.fb7d0f73.png +0 -0
- package/dist/Study.5ff9518c.js +0 -137
- package/dist/Study.5ff9518c.js.map +0 -1
- package/dist/expression-atlas-logo.87d25571.png +0 -0
- package/dist/genetree.145467e3.png +0 -0
- package/dist/index.css +0 -1555
- package/dist/index.css.map +0 -1
- package/dist/index.js +0 -5673
- package/dist/index.js.map +0 -1
- package/dist/results.e437a98f.png +0 -0
- package/dist/suggestions.7b2830b6.png +0 -0
|
Binary file
|
package/.parcel-cache/lock.mdb
CHANGED
|
Binary file
|
|
Binary file
|
|
@@ -1,2 +1,2 @@
|
|
|
1
|
-
|
|
2
|
-
|
|
1
|
+
126799912
|
|
2
|
+
1728106117770698000
|
package/package.json
CHANGED
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
{
|
|
2
2
|
"name": "gramene-search",
|
|
3
|
-
"version": "1.6.
|
|
3
|
+
"version": "1.6.2",
|
|
4
4
|
"description": "search wrapper for gramene.",
|
|
5
5
|
"source": "src/index.js",
|
|
6
6
|
"main": "dist/index.js",
|
|
@@ -29,7 +29,7 @@
|
|
|
29
29
|
"formik": "^3.0.0-next.8",
|
|
30
30
|
"gramene-bins-client": "^2.3.3",
|
|
31
31
|
"gramene-dbxrefs": "^3.0.13",
|
|
32
|
-
"gramene-efp-browser": "^1.0.
|
|
32
|
+
"gramene-efp-browser": "^1.0.7",
|
|
33
33
|
"gramene-genetree-vis": "^4.2.7",
|
|
34
34
|
"gramene-mdview": "^2.0.6",
|
|
35
35
|
"gramene-search-vis": "^4.2.4",
|
|
Binary file
|
package/dist/Study.5ff9518c.js
DELETED
|
@@ -1,137 +0,0 @@
|
|
|
1
|
-
var $eTR7Q$reactjsxruntime = require("react/jsx-runtime");
|
|
2
|
-
var $eTR7Q$react = require("react");
|
|
3
|
-
var $eTR7Q$reduxbundlerreact = require("redux-bundler-react");
|
|
4
|
-
var $eTR7Q$aggridreact = require("ag-grid-react");
|
|
5
|
-
require("ag-grid-community/styles/ag-grid.css");
|
|
6
|
-
require("ag-grid-community/styles/ag-theme-quartz.css");
|
|
7
|
-
|
|
8
|
-
|
|
9
|
-
function $parcel$defineInteropFlag(a) {
|
|
10
|
-
Object.defineProperty(a, '__esModule', {value: true, configurable: true});
|
|
11
|
-
}
|
|
12
|
-
|
|
13
|
-
function $parcel$export(e, n, v, s) {
|
|
14
|
-
Object.defineProperty(e, n, {get: v, set: s, enumerable: true, configurable: true});
|
|
15
|
-
}
|
|
16
|
-
|
|
17
|
-
var $parcel$global = globalThis;
|
|
18
|
-
var parcelRequire = $parcel$global["parcelRequire7a41"];
|
|
19
|
-
var parcelRegister = parcelRequire.register;
|
|
20
|
-
parcelRegister("7zuJ6", function(module, exports) {
|
|
21
|
-
|
|
22
|
-
$parcel$defineInteropFlag(module.exports);
|
|
23
|
-
|
|
24
|
-
$parcel$export(module.exports, "default", () => $5833a2eeefc77457$export$2e2bcd8739ae039);
|
|
25
|
-
|
|
26
|
-
|
|
27
|
-
|
|
28
|
-
|
|
29
|
-
|
|
30
|
-
|
|
31
|
-
const $5833a2eeefc77457$var$metaRenderer = (params)=>{
|
|
32
|
-
if (params.value.ontology) return /*#__PURE__*/ (0, $eTR7Q$reactjsxruntime.jsx)("a", {
|
|
33
|
-
href: `http://purl.obolibrary.org/obo/${params.value.id.replace(":", "_")}`,
|
|
34
|
-
target: "_blank",
|
|
35
|
-
children: params.value.label
|
|
36
|
-
});
|
|
37
|
-
return params.value.label;
|
|
38
|
-
};
|
|
39
|
-
const $5833a2eeefc77457$var$sampleRenderer = (params)=>{
|
|
40
|
-
const sampleMeta = params.value;
|
|
41
|
-
return JSON.stringify(sampleMeta, null, 2);
|
|
42
|
-
};
|
|
43
|
-
const $5833a2eeefc77457$var$Study = (props)=>{
|
|
44
|
-
let samples = props.expressionSamples[props.id];
|
|
45
|
-
let sampleMetadata = [];
|
|
46
|
-
let metadataFields = [
|
|
47
|
-
{
|
|
48
|
-
field: "sampleId",
|
|
49
|
-
cellRenderer: $5833a2eeefc77457$var$sampleRenderer
|
|
50
|
-
}
|
|
51
|
-
];
|
|
52
|
-
let isFactor = {};
|
|
53
|
-
samples.forEach((sample, idx)=>{
|
|
54
|
-
if (idx === 0) {
|
|
55
|
-
let factors = {
|
|
56
|
-
headerName: "Experimental Variables",
|
|
57
|
-
children: []
|
|
58
|
-
};
|
|
59
|
-
sample.factor.forEach((factor)=>{
|
|
60
|
-
factors.children.push({
|
|
61
|
-
field: factor.type,
|
|
62
|
-
cellRenderer: $5833a2eeefc77457$var$metaRenderer
|
|
63
|
-
});
|
|
64
|
-
isFactor[factor.type] = true;
|
|
65
|
-
});
|
|
66
|
-
metadataFields.push(factors);
|
|
67
|
-
let characteristics = {
|
|
68
|
-
headerName: "Sample Characteristics",
|
|
69
|
-
children: []
|
|
70
|
-
};
|
|
71
|
-
sample.characteristic.forEach((ch)=>{
|
|
72
|
-
if (!isFactor[ch.type]) characteristics.children.push({
|
|
73
|
-
field: ch.type,
|
|
74
|
-
cellRenderer: $5833a2eeefc77457$var$metaRenderer
|
|
75
|
-
});
|
|
76
|
-
});
|
|
77
|
-
metadataFields.push(characteristics);
|
|
78
|
-
}
|
|
79
|
-
let s_info = {
|
|
80
|
-
sampleId: sample
|
|
81
|
-
};
|
|
82
|
-
sample.factor.forEach((factor)=>{
|
|
83
|
-
s_info[factor.type] = {
|
|
84
|
-
label: factor.label
|
|
85
|
-
};
|
|
86
|
-
if (factor.ontology) {
|
|
87
|
-
s_info[factor.type]["ontology"] = factor.ontology;
|
|
88
|
-
s_info[factor.type]["id"] = factor.id;
|
|
89
|
-
}
|
|
90
|
-
});
|
|
91
|
-
sample.characteristic.forEach((ch)=>{
|
|
92
|
-
s_info[ch.type] = {
|
|
93
|
-
label: ch.label
|
|
94
|
-
};
|
|
95
|
-
if (ch.ontology) {
|
|
96
|
-
s_info[ch.type]["ontology"] = ch.ontology;
|
|
97
|
-
s_info[ch.type]["id"] = ch.id;
|
|
98
|
-
}
|
|
99
|
-
});
|
|
100
|
-
sampleMetadata.push(s_info);
|
|
101
|
-
});
|
|
102
|
-
const [rowData, setRowData] = (0, $eTR7Q$react.useState)(sampleMetadata);
|
|
103
|
-
const [colDefs, setColDefs] = (0, $eTR7Q$react.useState)(metadataFields);
|
|
104
|
-
const defaultColDef = (0, $eTR7Q$react.useMemo)(()=>{
|
|
105
|
-
return {
|
|
106
|
-
filter: true
|
|
107
|
-
};
|
|
108
|
-
}, []);
|
|
109
|
-
return /*#__PURE__*/ (0, $eTR7Q$reactjsxruntime.jsxs)("div", {
|
|
110
|
-
children: [
|
|
111
|
-
/*#__PURE__*/ (0, $eTR7Q$reactjsxruntime.jsx)("div", {
|
|
112
|
-
className: "ag-theme-quartz",
|
|
113
|
-
style: {
|
|
114
|
-
height: `${44 * (samples.length + 2)}px`
|
|
115
|
-
},
|
|
116
|
-
children: /*#__PURE__*/ (0, $eTR7Q$reactjsxruntime.jsx)((0, $eTR7Q$aggridreact.AgGridReact), {
|
|
117
|
-
rowData: rowData,
|
|
118
|
-
columnDefs: colDefs,
|
|
119
|
-
defaultColDef: defaultColDef
|
|
120
|
-
})
|
|
121
|
-
}),
|
|
122
|
-
/*#__PURE__*/ (0, $eTR7Q$reactjsxruntime.jsxs)("a", {
|
|
123
|
-
href: `https://www.ebi.ac.uk/gxa/experiments/${props.id}`,
|
|
124
|
-
children: [
|
|
125
|
-
"EBI Atlas Experiment: ",
|
|
126
|
-
props.id
|
|
127
|
-
]
|
|
128
|
-
})
|
|
129
|
-
]
|
|
130
|
-
});
|
|
131
|
-
};
|
|
132
|
-
var $5833a2eeefc77457$export$2e2bcd8739ae039 = (0, $eTR7Q$reduxbundlerreact.connect)("selectExpressionSamples", "doToggleExpressionSample", $5833a2eeefc77457$var$Study);
|
|
133
|
-
|
|
134
|
-
});
|
|
135
|
-
|
|
136
|
-
|
|
137
|
-
//# sourceMappingURL=Study.5ff9518c.js.map
|
|
@@ -1 +0,0 @@
|
|
|
1
|
-
{"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAMA,MAAM,qCAAe,CAAA;IACnB,IAAI,OAAO,KAAK,CAAC,QAAQ,EACvB,qBAAO,gCAAC;QAAE,MAAM,CAAC,+BAA+B,EAAE,OAAO,KAAK,CAAC,EAAE,CAAC,OAAO,CAAC,KAAI,KAAK,CAAC;QAAE,QAAO;kBAAU,OAAO,KAAK,CAAC,KAAK;;IAE3H,OAAO,OAAO,KAAK,CAAC,KAAK;AAC3B;AACA,MAAM,uCAAiB,CAAA;IACrB,MAAM,aAAa,OAAO,KAAK;IAC/B,OAAO,KAAK,SAAS,CAAC,YAAW,MAAK;AACxC;AACA,MAAM,8BAAQ,CAAA;IACZ,IAAI,UAAU,MAAM,iBAAiB,CAAC,MAAM,EAAE,CAAC;IAC/C,IAAI,iBAAiB,EAAE;IACvB,IAAI,iBAAiB;QAAC;YAAE,OAAO;YAAY,cAAc;QAAe;KAAE;IAC1E,IAAI,WAAS,CAAC;IACd,QAAQ,OAAO,CAAC,CAAC,QAAQ;QACvB,IAAI,QAAQ,GAAG;YACb,IAAI,UAAU;gBACZ,YAAY;gBACZ,UAAU,EAAE;YACd;YACA,OAAO,MAAM,CAAC,OAAO,CAAC,CAAA;gBACpB,QAAQ,QAAQ,CAAC,IAAI,CAAC;oBAAC,OAAO,OAAO,IAAI;oBAAE,cAAc;gBAAY;gBACrE,QAAQ,CAAC,OAAO,IAAI,CAAC,GAAG;YAC1B;YACA,eAAe,IAAI,CAAC;YACpB,IAAI,kBAAkB;gBACpB,YAAY;gBACZ,UAAU,EAAE;YACd;YACA,OAAO,cAAc,CAAC,OAAO,CAAC,CAAA;gBAC5B,IAAI,CAAC,QAAQ,CAAC,GAAG,IAAI,CAAC,EACpB,gBAAgB,QAAQ,CAAC,IAAI,CAAC;oBAAC,OAAO,GAAG,IAAI;oBAAE,cAAc;gBAAY;YAE7E;YACA,eAAe,IAAI,CAAC;QACtB;QACA,IAAI,SAAS;YAAC,UAAU;QAAM;QAC9B,OAAO,MAAM,CAAC,OAAO,CAAC,CAAA;YACpB,MAAM,CAAC,OAAO,IAAI,CAAC,GAAG;gBAAC,OAAO,OAAO,KAAK;YAAA;YAC1C,IAAI,OAAO,QAAQ,EAAE;gBACnB,MAAM,CAAC,OAAO,IAAI,CAAC,CAAC,WAAW,GAAG,OAAO,QAAQ;gBACjD,MAAM,CAAC,OAAO,IAAI,CAAC,CAAC,KAAK,GAAG,OAAO,EAAE;YACvC;QACF;QACA,OAAO,cAAc,CAAC,OAAO,CAAC,CAAA;YAC5B,MAAM,CAAC,GAAG,IAAI,CAAC,GAAG;gBAAC,OAAO,GAAG,KAAK;YAAA;YAClC,IAAI,GAAG,QAAQ,EAAE;gBACf,MAAM,CAAC,GAAG,IAAI,CAAC,CAAC,WAAW,GAAG,GAAG,QAAQ;gBACzC,MAAM,CAAC,GAAG,IAAI,CAAC,CAAC,KAAK,GAAG,GAAG,EAAE;YAC/B;QACF;QACA,eAAe,IAAI,CAAC;IACtB;IACA,MAAM,CAAC,SAAS,WAAW,GAAG,CAAA,GAAA,qBAAO,EAAE;IACvC,MAAM,CAAC,SAAS,WAAW,GAAG,CAAA,GAAA,qBAAO,EAAE;IACvC,MAAM,gBAAgB,CAAA,GAAA,oBAAM,EAAE;QAC5B,OAAO;YACL,QAAQ;QACV;IACF,GAAG,EAAE;IACL,qBACE,iCAAC;;0BACC,gCAAC;gBAAI,WAAU;gBAAkB,OAAO;oBAAC,QAAQ,CAAC,EAAE,KAAM,CAAA,QAAQ,MAAM,GAAG,CAAA,EAAG,EAAE,CAAC;gBAAA;0BAC/E,cAAA,gCAAC,CAAA,GAAA,8BAAU;oBAAE,SAAS;oBAAS,YAAY;oBAAS,eAAe;;;0BAErE,iCAAC;gBAAE,MAAM,CAAC,sCAAsC,EAAE,MAAM,EAAE,CAAC,CAAC;;oBAAE;oBAAuB,MAAM,EAAE;;;;;AAGnG;IACA,2CAAe,CAAA,GAAA,gCAAM,EACnB,2BACA,4BACA","sources":["src/components/results/Study.js"],"sourcesContent":["import React, { useState, useMemo } from 'react'\nimport {connect} from \"redux-bundler-react\";\nimport { AgGridReact } from \"ag-grid-react\";\nimport \"ag-grid-community/styles/ag-grid.css\";\nimport \"ag-grid-community/styles/ag-theme-quartz.css\";\n\nconst metaRenderer = params => {\n if (params.value.ontology) {\n return <a href={`http://purl.obolibrary.org/obo/${params.value.id.replace(\":\",\"_\")}`} target='_blank'>{params.value.label}</a>\n }\n return params.value.label\n}\nconst sampleRenderer = params => {\n const sampleMeta = params.value;\n return JSON.stringify(sampleMeta,null,2);\n}\nconst Study = props => {\n let samples = props.expressionSamples[props.id];\n let sampleMetadata = [];\n let metadataFields = [{ field: \"sampleId\", cellRenderer: sampleRenderer }];\n let isFactor={};\n samples.forEach((sample, idx) => {\n if (idx === 0) {\n let factors = {\n headerName: 'Experimental Variables',\n children: []\n }\n sample.factor.forEach(factor => {\n factors.children.push({field: factor.type, cellRenderer: metaRenderer})\n isFactor[factor.type] = true;\n });\n metadataFields.push(factors);\n let characteristics = {\n headerName: 'Sample Characteristics',\n children: []\n }\n sample.characteristic.forEach(ch => {\n if (!isFactor[ch.type]) {\n characteristics.children.push({field: ch.type, cellRenderer: metaRenderer})\n }\n });\n metadataFields.push(characteristics)\n }\n let s_info = {sampleId: sample}\n sample.factor.forEach(factor => {\n s_info[factor.type] = {label: factor.label};\n if (factor.ontology) {\n s_info[factor.type]['ontology'] = factor.ontology\n s_info[factor.type]['id'] = factor.id;\n }\n })\n sample.characteristic.forEach(ch => {\n s_info[ch.type] = {label: ch.label};\n if (ch.ontology) {\n s_info[ch.type]['ontology'] = ch.ontology\n s_info[ch.type]['id'] = ch.id;\n }\n })\n sampleMetadata.push(s_info)\n })\n const [rowData, setRowData] = useState(sampleMetadata);\n const [colDefs, setColDefs] = useState(metadataFields);\n const defaultColDef = useMemo(() => {\n return {\n filter: true\n }\n }, []);\n return (\n <div>\n <div className=\"ag-theme-quartz\" style={{height: `${44 * (samples.length + 2)}px`}}>\n <AgGridReact rowData={rowData} columnDefs={colDefs} defaultColDef={defaultColDef}/>\n </div>\n <a href={`https://www.ebi.ac.uk/gxa/experiments/${props.id}`}>EBI Atlas Experiment: {props.id}</a>\n </div>\n );\n};\nexport default connect(\n 'selectExpressionSamples',\n 'doToggleExpressionSample',\n Study);\n"],"names":[],"version":3,"file":"Study.5ff9518c.js.map"}
|
|
Binary file
|
|
Binary file
|