gramene-search 1.6.0 → 1.6.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
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@@ -1,2 +1,2 @@
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- 17177462
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- 1722562359323702000
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+ 126799912
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+ 1728106117770698000
package/package.json CHANGED
@@ -1,6 +1,6 @@
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  {
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  "name": "gramene-search",
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- "version": "1.6.0",
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+ "version": "1.6.2",
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  "description": "search wrapper for gramene.",
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  "source": "src/index.js",
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  "main": "dist/index.js",
@@ -29,7 +29,7 @@
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  "formik": "^3.0.0-next.8",
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  "gramene-bins-client": "^2.3.3",
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  "gramene-dbxrefs": "^3.0.13",
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- "gramene-efp-browser": "^1.0.6",
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+ "gramene-efp-browser": "^1.0.7",
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  "gramene-genetree-vis": "^4.2.7",
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  "gramene-mdview": "^2.0.6",
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  "gramene-search-vis": "^4.2.4",
@@ -57,9 +57,9 @@ const study_info = {
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  '5': {label: 'Boatwright SAP', type: 'NAT'}
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  },
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  'oryza_sativa': {
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- '6': {label: 'Rice 3K', type: 'NAT'},
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- '12': {label: 'Rice USDA mini core', type: 'NAT'},
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- '15': {label: 'RAPDB 2024', type: 'NAT'},
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+ '7': {label: 'Rice 3K', type: 'NAT'},
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+ '29': {label: 'Rice USDA mini core', type: 'NAT'},
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+ '38': {label: 'RAPDB 2024', type: 'NAT'},
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  },
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  'oryza_aus': rice_studies,
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  'oryza_sativa117425': rice_studies,
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@@ -1,137 +0,0 @@
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- var $eTR7Q$reactjsxruntime = require("react/jsx-runtime");
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- var $eTR7Q$react = require("react");
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- var $eTR7Q$reduxbundlerreact = require("redux-bundler-react");
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- var $eTR7Q$aggridreact = require("ag-grid-react");
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- require("ag-grid-community/styles/ag-grid.css");
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- require("ag-grid-community/styles/ag-theme-quartz.css");
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-
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-
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- function $parcel$defineInteropFlag(a) {
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- Object.defineProperty(a, '__esModule', {value: true, configurable: true});
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- }
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-
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- function $parcel$export(e, n, v, s) {
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- Object.defineProperty(e, n, {get: v, set: s, enumerable: true, configurable: true});
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- }
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-
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- var $parcel$global = globalThis;
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- var parcelRequire = $parcel$global["parcelRequire7a41"];
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- var parcelRegister = parcelRequire.register;
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- parcelRegister("7zuJ6", function(module, exports) {
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-
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- $parcel$defineInteropFlag(module.exports);
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-
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- $parcel$export(module.exports, "default", () => $5833a2eeefc77457$export$2e2bcd8739ae039);
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-
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-
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-
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-
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-
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-
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- const $5833a2eeefc77457$var$metaRenderer = (params)=>{
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- if (params.value.ontology) return /*#__PURE__*/ (0, $eTR7Q$reactjsxruntime.jsx)("a", {
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- href: `http://purl.obolibrary.org/obo/${params.value.id.replace(":", "_")}`,
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- target: "_blank",
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- children: params.value.label
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- });
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- return params.value.label;
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- };
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- const $5833a2eeefc77457$var$sampleRenderer = (params)=>{
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- const sampleMeta = params.value;
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- return JSON.stringify(sampleMeta, null, 2);
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- };
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- const $5833a2eeefc77457$var$Study = (props)=>{
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- let samples = props.expressionSamples[props.id];
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- let sampleMetadata = [];
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- let metadataFields = [
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- {
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- field: "sampleId",
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- cellRenderer: $5833a2eeefc77457$var$sampleRenderer
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- }
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- ];
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- let isFactor = {};
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- samples.forEach((sample, idx)=>{
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- if (idx === 0) {
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- let factors = {
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- headerName: "Experimental Variables",
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- children: []
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- };
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- sample.factor.forEach((factor)=>{
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- factors.children.push({
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- field: factor.type,
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- cellRenderer: $5833a2eeefc77457$var$metaRenderer
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- });
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- isFactor[factor.type] = true;
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- });
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- metadataFields.push(factors);
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- let characteristics = {
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- headerName: "Sample Characteristics",
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- children: []
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- };
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- sample.characteristic.forEach((ch)=>{
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- if (!isFactor[ch.type]) characteristics.children.push({
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- field: ch.type,
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- cellRenderer: $5833a2eeefc77457$var$metaRenderer
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- });
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- });
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- metadataFields.push(characteristics);
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- }
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- let s_info = {
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- sampleId: sample
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- };
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- sample.factor.forEach((factor)=>{
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- s_info[factor.type] = {
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- label: factor.label
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- };
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- if (factor.ontology) {
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- s_info[factor.type]["ontology"] = factor.ontology;
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- s_info[factor.type]["id"] = factor.id;
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- }
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- });
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- sample.characteristic.forEach((ch)=>{
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- s_info[ch.type] = {
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- label: ch.label
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- };
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- if (ch.ontology) {
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- s_info[ch.type]["ontology"] = ch.ontology;
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- s_info[ch.type]["id"] = ch.id;
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- }
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- });
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- sampleMetadata.push(s_info);
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- });
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- const [rowData, setRowData] = (0, $eTR7Q$react.useState)(sampleMetadata);
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- const [colDefs, setColDefs] = (0, $eTR7Q$react.useState)(metadataFields);
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- const defaultColDef = (0, $eTR7Q$react.useMemo)(()=>{
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- return {
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- filter: true
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- };
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- }, []);
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- return /*#__PURE__*/ (0, $eTR7Q$reactjsxruntime.jsxs)("div", {
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- children: [
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- /*#__PURE__*/ (0, $eTR7Q$reactjsxruntime.jsx)("div", {
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- className: "ag-theme-quartz",
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- style: {
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- height: `${44 * (samples.length + 2)}px`
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- },
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- children: /*#__PURE__*/ (0, $eTR7Q$reactjsxruntime.jsx)((0, $eTR7Q$aggridreact.AgGridReact), {
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- rowData: rowData,
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- columnDefs: colDefs,
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- defaultColDef: defaultColDef
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- })
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- }),
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- /*#__PURE__*/ (0, $eTR7Q$reactjsxruntime.jsxs)("a", {
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- href: `https://www.ebi.ac.uk/gxa/experiments/${props.id}`,
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- children: [
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- "EBI Atlas Experiment: ",
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- props.id
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- ]
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- })
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- ]
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- });
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- };
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- var $5833a2eeefc77457$export$2e2bcd8739ae039 = (0, $eTR7Q$reduxbundlerreact.connect)("selectExpressionSamples", "doToggleExpressionSample", $5833a2eeefc77457$var$Study);
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-
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- });
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-
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-
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- //# sourceMappingURL=Study.5ff9518c.js.map
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