gramene-search 1.4.6 → 1.5.0

package/.parcel-cache/snapshot-369948a06d23ec44.txt

@@ -1,2 +1,2 @@
-45639393
-1716227417065002000
+18147469107994750558
+1719605229238939000

package/dist/index.js

@@ -2646,13 +2646,13 @@ class $569586cb7d303e26$export$2e2bcd8739ae039 extends (0, ($parcel$interopDefau
             sources: [
                 {
                     name: "DNA",
-                    ensemblURI: this.props.ensemblRest,
+                    ensemblURI: this.props.config.ensemblRest,
                     species: g.system_name,
                     tier_type: "sequence"
                 },
                 {
                     name: "Genes",
-                    uri: this.props.ensemblRest,
+                    uri: this.props.config.ensemblRest,
                     tier_type: "ensembl",
                     species: g.system_name,
                     type: [
@@ -2860,7 +2860,7 @@ class $264d7db426cab787$var$Location extends (0, ($parcel$interopDefault($gXNCa$
         let links = [
             {
                 name: "Ensembl Browser",
-                url: `${this.props.ensemblURL}/${gene.system_name}/Gene/Summary?g=${gene._id}`
+                url: `${this.props.config.ensemblURL}/${gene.system_name}/Gene/Summary?g=${gene._id}`
             }
         ];
         if (gene.annotations.taxonomy.ancestors.includes(4557)) links.push({
@@ -4400,60 +4400,63 @@ function $6c5c4f90059875bf$var$renderClosestOrtholog(gene) {
 function $6c5c4f90059875bf$var$shouldShowClosestOrtholog(searchResult) {
     return searchResult.closest_rep_id || searchResult.model_rep_id && searchResult.model_rep_id !== searchResult.id;
 }
+const $6c5c4f90059875bf$var$allDetails = [
+    {
+        id: "VEP",
+        label: "Germplasm",
+        popup: "Germplasm with protein truncating variants (PTVs)",
+        available: false
+    },
+    {
+        id: "sequences",
+        label: "Sequences",
+        popup: "Gene/cDNA/protein fasta",
+        available: true
+    },
+    {
+        id: "location",
+        label: "Location",
+        popup: "Genome Browser",
+        available: false
+    },
+    {
+        id: "expression",
+        label: "Expression",
+        popup: "Gene Expression Atlas",
+        available: false
+    },
+    {
+        id: "homology",
+        label: "Homology",
+        popup: "Gene Family Tree",
+        available: false
+    },
+    {
+        id: "pathways",
+        label: "Pathways",
+        popup: "Plant Reactome Pathways",
+        available: false
+    },
+    {
+        id: "pubs",
+        label: "Papers",
+        popup: "Curated Publications",
+        available: false
+    },
+    {
+        id: "xrefs",
+        label: "Xrefs",
+        popup: "Database Cross-references",
+        available: false
+    }
+];
 class $6c5c4f90059875bf$var$Gene extends (0, ($parcel$interopDefault($gXNCa$react))).Component {
     constructor(props){
         super(props);
         this.state = {
-            details: [
-                // {
-                //   id: 'VEP',
-                //   label: 'Germplasm',
-                //   popup: 'Germplasm with protein truncating variants (PTVs)',
-                //   available: false
-                // },
-                {
-                    id: "sequences",
-                    label: "Sequences",
-                    popup: "Gene/cDNA/protein fasta",
-                    available: true
-                },
-                {
-                    id: "location",
-                    label: "Location",
-                    popup: "Genome Browser",
-                    available: false
-                },
-                {
-                    id: "expression",
-                    label: "Expression",
-                    popup: "Gene Expression Atlas",
-                    available: false
-                },
-                {
-                    id: "homology",
-                    label: "Homology",
-                    popup: "Gene Family Tree",
-                    available: false
-                },
-                {
-                    id: "pathways",
-                    label: "Pathways",
-                    popup: "Plant Reactome Pathways",
-                    available: false
-                },
-                {
-                    id: "pubs",
-                    label: "Papers",
-                    popup: "Curated Publications",
-                    available: false
-                },
-                {
-                    id: "xrefs",
-                    label: "Xrefs",
-                    popup: "Database Cross-references",
-                    available: false
-                }
-            ],
+            details: $6c5c4f90059875bf$var$allDetails.map((o)=>({
+                    ...o
+                })).filter((d)=>props.config.details[d.id]),
             expandedDetail: props.expandedDetail
         };
         let hasData = {};
@@ -4498,7 +4501,7 @@ class $6c5c4f90059875bf$var$Gene extends (0, ($parcel$interopDefault($gXNCa$reac
         return $6c5c4f90059875bf$var$renderTairSummary(gene) || $6c5c4f90059875bf$var$renderClosestOrtholog(gene);
     }
     render() {
-        const panSite = this.props.panSite;
+        const panSite = this.props.config.panSite;
         const searchResult = this.props.searchResult;
         const taxName = this.props.taxName;
         // let orthologs='';
@@ -4620,9 +4623,7 @@ const $6c5c4f90059875bf$var$GeneList = (props)=>{
                 }),
                 props.grameneSearch.response.docs.map((g, idx)=>/*#__PURE__*/ (0, $gXNCa$reactjsxruntime.jsx)($6c5c4f90059875bf$var$Gene, {
                         searchResult: g,
-                        ensemblURL: props.configuration.ensemblURL,
-                        ensemblRest: props.configuration.ensemblRest,
-                        panSite: props.configuration.panSite,
+                        config: props.configuration,
                         taxName: props.grameneTaxonomy[g.taxon_id].name,
                         geneDocs: props.grameneGenes,
                         requestGene: props.doRequestGrameneGene,