gramene-search 1.2.20 → 1.2.23

package/.parcel-cache/2b1c1cd7b577d2ca.txt

@@ -1,2 +1,2 @@
-12742866
-1648565139043351000
+15713755
+1648661123055415000

package/dist/index.js

@@ -503,7 +503,7 @@ function $b8aee296158e1013$var$_interopRequireDefault(obj) {
         "default": obj
     };
 }
-var $b8aee296158e1013$var$MAX_IDLIST_LENGTH = 10;
+var $b8aee296158e1013$var$MAX_IDLIST_LENGTH = 20;
 function $b8aee296158e1013$var$findNodeWithLeftIdx(node, idx) {
     if (node.leftIdx === idx) return node;
     var result = null;
@@ -1032,6 +1032,7 @@ var $b8aee296158e1013$var$grameneFilters = {
     },
     selectGrameneFiltersQueryString: function selectGrameneFiltersQueryString(state) {
         var hasSpaces = new RegExp(/^[^\[\(].*\s/);
+        var isQuery = new RegExp(/\([a-zA-Z0-9_]+:[a-zA-Z0-9_]+\s/);
         function getQuery(node) {
             var negate = node.negate ? 'NOT ' : '';
             if (node.hasOwnProperty('children')) // do some recursion
@@ -1040,6 +1041,7 @@ var $b8aee296158e1013$var$grameneFilters = {
             }).sort().join(" ".concat(node.operation, " ")), ")");
             else {
                 // this node is a suggestion
+                if (isQuery.test(node.fq_value)) return "".concat(negate).concat(node.fq_value);
                 if (hasSpaces.test(node.fq_value)) return "".concat(negate).concat(node.fq_field, ":\"").concat(node.fq_value, "\"");
                 else return "".concat(negate).concat(node.fq_field, ":").concat(node.fq_value);
             }
@@ -1715,28 +1717,71 @@ function $8979ce19c4476d02$var$showMatches(text, x) {
 }
 var $8979ce19c4476d02$var$Suggestions = function Suggestions(props) {
     var suggestions = props.grameneSuggestions;
-    return(/*#__PURE__*/ $8979ce19c4476d02$var$_react["default"].createElement("div", null, suggestions && suggestions.grouped && suggestions.grouped.category && suggestions.grouped.category.groups && suggestions.grouped.category.groups.map(function(g, idx) {
-        return(/*#__PURE__*/ $8979ce19c4476d02$var$_react["default"].createElement("div", {
-            key: idx,
-            id: "gramene-suggestion"
-        }, /*#__PURE__*/ $8979ce19c4476d02$var$_react["default"].createElement("h4", {
-            className: "mt10"
-        }, g.groupValue), g.doclist.docs.map(function(sugg, jdx) {
-            return(/*#__PURE__*/ $8979ce19c4476d02$var$_react["default"].createElement($ByO3L$reactbootstrap.Button, {
-                id: "".concat(idx, "-").concat(jdx),
-                key: jdx,
-                disabled: sugg.num_genes === 0,
-                size: "sm",
-                variant: "outline-secondary",
+    if (suggestions && suggestions.grouped) {
+        if (suggestions.grouped.category.matches === 0) {
+            var sugg1 = {
+                fq_field: 'text',
+                fq_value: props.suggestionsQuery,
+                name: "Genes containing \"".concat(props.suggestionsQuery, "\""),
+                category: 'Gene'
+            };
+            var sugg2 = {
+                fq_field: 'text',
+                fq_value: "".concat(props.suggestionsQuery, "*"),
+                name: "Genes matching \"".concat(props.suggestionsQuery, "*\""),
+                category: 'Gene'
+            };
+            return(/*#__PURE__*/ $8979ce19c4476d02$var$_react["default"].createElement("div", {
+                style: {
+                    margin: '10px',
+                    maxWidth: '820px'
+                }
+            }, /*#__PURE__*/ $8979ce19c4476d02$var$_react["default"].createElement($ByO3L$reactbootstrap.Alert, {
+                variant: 'info'
+            }, /*#__PURE__*/ $8979ce19c4476d02$var$_react["default"].createElement("em", null, "No suggestions found."), " You may still attempt a full text search, though it is unlikely to find any genes for you."), /*#__PURE__*/ $8979ce19c4476d02$var$_react["default"].createElement($ByO3L$reactbootstrap.Button, {
+                id: 'word',
+                size: 'sm',
+                variant: 'outline-secondary',
+                onClick: function onClick() {
+                    props.doAcceptSuggestion(sugg1);
+                    props.doAcceptGrameneSuggestion(sugg1);
+                }
+            }, "All genes that contain the word \"".concat(props.suggestionsQuery, "\"")), /*#__PURE__*/ $8979ce19c4476d02$var$_react["default"].createElement($ByO3L$reactbootstrap.Button, {
+                id: 'word',
+                size: 'sm',
+                variant: 'outline-secondary',
                 onClick: function onClick() {
-                    props.doAcceptSuggestion(sugg);
-                    props.doAcceptGrameneSuggestion(sugg);
+                    props.doAcceptSuggestion(sugg2);
+                    props.doAcceptGrameneSuggestion(sugg2);
                 }
-            }, $8979ce19c4476d02$var$showMatches(sugg.display_name, props.suggestionsQuery), ' ', /*#__PURE__*/ $8979ce19c4476d02$var$_react["default"].createElement($ByO3L$reactbootstrap.Badge, {
-                variant: "secondary"
-            }, sugg.num_genes)));
+            }, "All genes that contain a word that starts with \"".concat(props.suggestionsQuery, "\""))));
+        } else return(/*#__PURE__*/ $8979ce19c4476d02$var$_react["default"].createElement("div", {
+            style: {
+                margin: '10px'
+            }
+        }, suggestions.grouped.category.groups.map(function(g, idx) {
+            return(/*#__PURE__*/ $8979ce19c4476d02$var$_react["default"].createElement("div", {
+                key: idx,
+                id: "gramene-suggestion"
+            }, /*#__PURE__*/ $8979ce19c4476d02$var$_react["default"].createElement("h4", {
+                className: "mt10"
+            }, g.groupValue), g.doclist.docs.map(function(sugg, jdx) {
+                return(/*#__PURE__*/ $8979ce19c4476d02$var$_react["default"].createElement($ByO3L$reactbootstrap.Button, {
+                    id: "".concat(idx, "-").concat(jdx),
+                    key: jdx,
+                    disabled: sugg.num_genes === 0,
+                    size: "sm",
+                    variant: "outline-secondary",
+                    onClick: function onClick() {
+                        props.doAcceptSuggestion(sugg);
+                        props.doAcceptGrameneSuggestion(sugg);
+                    }
+                }, $8979ce19c4476d02$var$showMatches(sugg.display_name, props.suggestionsQuery), ' ', /*#__PURE__*/ $8979ce19c4476d02$var$_react["default"].createElement($ByO3L$reactbootstrap.Badge, {
+                    variant: "secondary"
+                }, sugg.num_genes)));
+            })));
         })));
-    })));
+    } else return(/*#__PURE__*/ $8979ce19c4476d02$var$_react["default"].createElement("div", null));
 };
 var $8979ce19c4476d02$var$_default = $ByO3L$reduxbundlerreact.connect('selectGrameneSuggestions', 'selectSuggestionsQuery', 'doAcceptSuggestion', 'doAcceptGrameneSuggestion', $8979ce19c4476d02$var$Suggestions);
 module.exports["default"] = $8979ce19c4476d02$var$_default;
@@ -3503,7 +3548,7 @@ var $57871e966e0c4f66$var$Pathways = /*#__PURE__*/ function(_React$Component) {
                     proxyPrefix: $57871e966e0c4f66$var$reactomeURL,
                     //'//plantreactome.gramene.org', //'//plantreactomedev.oicr.on.ca', ////cord3084-pc7.science.oregonstate.edu', // reactomedev.oicr.on.ca
                     placeHolder: this.holderId,
-                    width: this.divWrapper.clientWidth - 350,
+                    width: this.divWrapper.clientWidth - 350 - 1,
                     height: 500
                 });
             }