gosling.js 2.0.0-alpha.2 → 2.0.0-alpha.3

package/dist/gosling.js

@@ -35,7 +35,7 @@ import { scaleLinear, scaleLog, scaleQuantile, scaleSequential, scaleOrdinal, sc
 import { drag } from "d3-drag";
 import { sampleSize, isEqual, uniqBy } from "lodash-es";
 import { interpolateViridis } from "d3-scale-chromatic";
-import { A as Ajv, r as resolveSuperposedTracks, I as IsChannelDeep, t as traverseTracks, a as IsTemplateTrack, D as DEWFAULT_TITLE_PADDING_ON_TOP_AND_BOTTOM, b as traverseTracksAndViews, c as traverseViewArrangements, d as DEFAULT_AXIS_SIZE, e as Is2DTrack, f as DEFAULT_VIEW_SPACING, g as DEFAULT_INNER_RADIUS_PROP, h as IsDummyTrack, i as IsOverlaidTrack, j as IsXAxis, k as IsYAxis, l as DEFAULT_CIRCULAR_VIEW_PADDING, u as uuid, m as traverseToFixSpecDownstream, n as absToChr, o as colorToHex, p as getTextStyle, q as computeChromSizes, s as cartesianToPolar, v as getHiGlassColorRange, R as RADIAN_GAP, w as valueToRadian, x as pointsToDegree, y as commonjsGlobal, z as RemoteFile, B as chrToAbs, C as IsOneOfFilter, E as IsRangeFilter, F as IsIncludeFilter, G as getChannelKeysByAggregateFnc, H as getChannelKeysByType, J as sanitizeChrName, K as filterUsingGenoPos, L as IsDataDeepTileset, M as IsDomainChr, N as IsDomainInterval, O as IsDomainChrInterval, S as SUPPORTED_CHANNELS, P as IsChannelValue, Q as getValueUsingChannel, T as rectProperty, U as pointProperty, V as barProperty, W as IsStackedChannel, X as IsDomainArray, Y as PREDEFINED_COLOR_STR_MAP, Z as IsRangeArray, _ as isTabularDataFetcher, $ as drawPreEmbellishment, a0 as drawMark, a1 as drawPostEmbellishment, a2 as getRelativeGenomicPosition, a3 as hasDataTransform, a4 as IsMouseEventsDeep, a5 as flatArrayToPairArray, a6 as IsSingleView, a7 as IsMultipleViews, a8 as GenomicPositionHelper } from "./exported-utils-b3ea2b1e.js";
+import { A as Ajv, r as resolveSuperposedTracks, I as IsChannelDeep, t as traverseTracks, a as IsTemplateTrack, D as DEWFAULT_TITLE_PADDING_ON_TOP_AND_BOTTOM, b as traverseTracksAndViews, c as traverseViewArrangements, d as DEFAULT_AXIS_SIZE, e as Is2DTrack, f as DEFAULT_VIEW_SPACING, g as DEFAULT_INNER_RADIUS_PROP, h as IsDummyTrack, i as IsOverlaidTrack, j as IsXAxis, k as IsYAxis, l as DEFAULT_CIRCULAR_VIEW_PADDING, u as uuid, m as traverseToFixSpecDownstream, n as absToChr, o as colorToHex, p as getTextStyle, q as computeChromSizes, s as cartesianToPolar, v as getHiGlassColorRange, R as RADIAN_GAP, w as valueToRadian, x as pointsToDegree, y as commonjsGlobal, z as RemoteFile, B as chrToAbs, C as IsOneOfFilter, E as IsRangeFilter, F as IsIncludeFilter, G as getChannelKeysByAggregateFnc, H as getChannelKeysByType, J as sanitizeChrName, K as filterUsingGenoPos, L as IsDataDeepTileset, M as IsDomainChr, N as IsDomainInterval, O as IsDomainChrInterval, S as SUPPORTED_CHANNELS, P as IsChannelValue, Q as getValueUsingChannel, T as rectProperty, U as pointProperty, V as barProperty, W as IsStackedChannel, X as IsDomainArray, Y as PREDEFINED_COLOR_STR_MAP, Z as IsRangeArray, _ as isTabularDataFetcher, $ as drawPreEmbellishment, a0 as drawMark, a1 as drawPostEmbellishment, a2 as getRelativeGenomicPosition, a3 as hasDataTransform, a4 as IsMouseEventsDeep, a5 as flatArrayToPairArray, a6 as IsSingleView, a7 as IsMultipleViews, a8 as GenomicPositionHelper } from "./exported-utils-bd94e9c8.js";
 import React, { useState, useImperativeHandle, useEffect } from "react";
 import { format, precisionPrefix, formatPrefix } from "d3-format";
 import slugid from "slugid";
@@ -55,7 +55,7 @@ import { createNanoEvents } from "nanoevents";
 import PubSub$1 from "pubsub-js";
 import { zoom, ZoomTransform } from "d3-zoom";
 const name = "gosling.js";
-const version = "2.0.0-alpha.2";
+const version = "2.0.0-alpha.3";
 const $ref$1 = "#/definitions/GoslingSpec";
 const $schema$1 = "http://json-schema.org/draft-07/schema#";
 const definitions$1 = {
@@ -846,6 +846,10 @@ const definitions$1 = {
         description: "Specify the track width in pixels.",
         type: "number"
       },
+      x: {
+        $ref: "#/definitions/X",
+        description: "For showing axis"
+      },
       zoomLimits: {
         description: "Unused property for DummyTrack",
         items: {
@@ -5604,6 +5608,10 @@ const definitions$1 = {
           },
           {
             $ref: "#/definitions/ChannelValue"
+          },
+          {
+            $ref: "#/definitions/X",
+            description: "For showing axis"
           }
         ]
       },
@@ -11763,6 +11771,7 @@ function compile(spec, templates, theme, containerStatus) {
     trackInfos = getRelativeTrackInfo(specCopy, theme).trackInfos;
   }
   const compileResult = collectViewsAndTracks(specCopy, trackInfos, theme);
+  console.warn(compileResult);
   return compileResult;
 }
 class PixiManager {
@@ -17711,16 +17720,23 @@ function getAxisTrackCircularOptions(track, boundingBox, position, theme) {
   return options;
 }
 function getAxisPositions(track) {
-  var _a, _b;
-  if (IsTemplateTrack(track) || IsDummyTrack(track)) {
+  var _a, _b, _c;
+  if (IsTemplateTrack(track)) {
     return { xAxisPosition: void 0, yAxisPosition: void 0 };
   }
+  if (IsDummyTrack(track)) {
+    if ((_a = track.x) == null ? void 0 : _a.axis) {
+      return { xAxisPosition: track.x.axis, yAxisPosition: void 0 };
+    } else {
+      return { xAxisPosition: void 0, yAxisPosition: void 0 };
+    }
+  }
   const resolvedSpecs = resolveSuperposedTracks(track);
   const firstResolvedSpec = resolvedSpecs[0];
   const hasXAxis = "x" in firstResolvedSpec && firstResolvedSpec.x && "axis" in firstResolvedSpec.x && firstResolvedSpec.x.axis !== "none" && firstResolvedSpec.x.type === "genomic" || false;
   const hasYAxis = "y" in firstResolvedSpec && firstResolvedSpec.y && "axis" in firstResolvedSpec.y && firstResolvedSpec.y.axis !== "none" && firstResolvedSpec.y.type === "genomic" || false;
-  const xAxisPosition = hasXAxis && IsChannelDeep(firstResolvedSpec.x) ? (_a = firstResolvedSpec.x) == null ? void 0 : _a.axis : void 0;
-  const yAxisPosition = hasYAxis && IsChannelDeep(firstResolvedSpec.y) ? (_b = firstResolvedSpec.y) == null ? void 0 : _b.axis : void 0;
+  const xAxisPosition = hasXAxis && IsChannelDeep(firstResolvedSpec.x) ? (_b = firstResolvedSpec.x) == null ? void 0 : _b.axis : void 0;
+  const yAxisPosition = hasYAxis && IsChannelDeep(firstResolvedSpec.y) ? (_c = firstResolvedSpec.y) == null ? void 0 : _c.axis : void 0;
   return {
     xAxisPosition,
     yAxisPosition
@@ -18186,8 +18202,15 @@ class BrushCircularTrack extends CircularBrushTrackClass {
     return this;
   }
 }
-function processDummyTrack(track, boundingBox) {
+function processDummyTrack(track, boundingBox, theme) {
   var _a;
+  const trackDefs = [];
+  const [newTrackBbox, axisTrackDefs] = getAxisTrackDef(track, boundingBox, theme);
+  if (axisTrackDefs) {
+    if (!track.overlayOnPreviousTrack)
+      trackDefs.push(...axisTrackDefs);
+    boundingBox = newTrackBbox;
+  }
   const trackDef = {
     type: TrackType.Dummy,
     trackId: track.id,
@@ -18199,7 +18222,8 @@ function processDummyTrack(track, boundingBox) {
       title: (_a = track.title) != null ? _a : ""
     }
   };
-  return [trackDef];
+  trackDefs.push(trackDef);
+  return trackDefs;
 }
 var TrackType = /* @__PURE__ */ ((TrackType2) => {
   TrackType2[TrackType2["Text"] = 0] = "Text";
@@ -18213,7 +18237,6 @@ var TrackType = /* @__PURE__ */ ((TrackType2) => {
 })(TrackType || {});
 function createTrackDefs(trackInfos, theme) {
   const trackDefs = [];
-  console.warn("trackinfos", trackInfos);
   trackInfos.forEach((trackInfo2) => {
     const { track, boundingBox } = trackInfo2;
     if (track.mark === "_header") {
@@ -18223,7 +18246,7 @@ function createTrackDefs(trackInfos, theme) {
       const heatmapTrackDefs = processHeatmapTrack(track, boundingBox, theme);
       trackDefs.push(...heatmapTrackDefs);
     } else if (IsDummyTrack(track)) {
-      const dummyTrackDefs = processDummyTrack(track, boundingBox);
+      const dummyTrackDefs = processDummyTrack(track, boundingBox, theme);
       trackDefs.push(...dummyTrackDefs);
     } else {
       const goslingAxisDefs = processGoslingTrack(track, boundingBox, theme);
@@ -30104,7 +30127,7 @@ function getSingleViewLinks(gs) {
     };
     tracks2.forEach((track) => {
       var _a;
-      if (hasDiffXDomainThanView(gs, track, assembly2, viewXDomain2) || IsDummyTrack(track))
+      if (hasDiffXDomainThanView(gs, track, assembly2, viewXDomain2))
         return;
       const hasOverlaidTracks = "_overlay" in track;
       if (hasOverlaidTracks) {