gosling.js 1.0.5 → 2.0.0-alpha.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +15 -6
- package/dist/assets/bam-worker-146b4a0a.js.map +1 -0
- package/dist/assets/bed-worker-49850b1d.js.map +1 -0
- package/dist/assets/gff-worker-c1616095.js.map +1 -0
- package/dist/assets/vcf-worker-5469c2fe.js.map +1 -0
- package/dist/demo/gosling-component.d.ts +34 -0
- package/dist/demo/gosling-component.d.ts.map +1 -0
- package/dist/demo/linking/linkedEncoding.d.ts +18 -0
- package/dist/demo/linking/linkedEncoding.d.ts.map +1 -0
- package/dist/demo/renderer/dataFetcher.d.ts +17 -0
- package/dist/demo/renderer/dataFetcher.d.ts.map +1 -0
- package/dist/demo/renderer/main.d.ts +11 -0
- package/dist/demo/renderer/main.d.ts.map +1 -0
- package/dist/demo/track-def/axis.d.ts +22 -0
- package/dist/demo/track-def/axis.d.ts.map +1 -0
- package/dist/demo/track-def/brush.d.ts +11 -0
- package/dist/demo/track-def/brush.d.ts.map +1 -0
- package/dist/demo/track-def/dummy.d.ts +10 -0
- package/dist/demo/track-def/dummy.d.ts.map +1 -0
- package/dist/demo/track-def/gosling.d.ts +18 -0
- package/dist/demo/track-def/gosling.d.ts.map +1 -0
- package/dist/demo/track-def/heatmap.d.ts +13 -0
- package/dist/demo/track-def/heatmap.d.ts.map +1 -0
- package/dist/demo/track-def/main.d.ts +68 -0
- package/dist/demo/track-def/main.d.ts.map +1 -0
- package/dist/demo/track-def/text.d.ts +17 -0
- package/dist/demo/track-def/text.d.ts.map +1 -0
- package/dist/demo/track-def/types.d.ts +73 -0
- package/dist/demo/track-def/types.d.ts.map +1 -0
- package/dist/exported-utils-b3ea2b1e.js +9950 -0
- package/dist/exported-utils-b3ea2b1e.js.map +1 -0
- package/dist/gosling.js +24775 -4601
- package/dist/gosling.js.map +1 -1
- package/dist/src/alias/buffer-shim.d.ts +2 -0
- package/dist/src/alias/buffer-shim.d.ts.map +1 -0
- package/dist/src/alias/zlib.d.ts +0 -1
- package/dist/src/alias/zlib.d.ts.map +1 -1
- package/dist/src/api/api-data.d.ts.map +1 -1
- package/dist/src/api/api.d.ts +11 -4
- package/dist/src/api/api.d.ts.map +1 -1
- package/dist/src/compiler/bounding-box.d.ts +2 -1
- package/dist/src/compiler/bounding-box.d.ts.map +1 -1
- package/dist/src/compiler/compile.d.ts +15 -11
- package/dist/src/compiler/compile.d.ts.map +1 -1
- package/dist/src/compiler/defaults.d.ts +1 -0
- package/dist/src/compiler/defaults.d.ts.map +1 -1
- package/dist/src/compiler/normalize.d.ts +12 -0
- package/dist/src/compiler/normalize.d.ts.map +1 -0
- package/dist/src/compiler/spec-preprocess.d.ts.map +1 -1
- package/dist/src/compiler/views-and-tracks.d.ts +14 -0
- package/dist/src/compiler/views-and-tracks.d.ts.map +1 -0
- package/dist/src/core/mark/area.d.ts +1 -1
- package/dist/src/core/mark/area.d.ts.map +1 -1
- package/dist/src/core/mark/axis.d.ts +2 -6
- package/dist/src/core/mark/axis.d.ts.map +1 -1
- package/dist/src/core/mark/index.d.ts +3 -3
- package/dist/src/core/mark/index.d.ts.map +1 -1
- package/dist/src/core/mark/legend.d.ts +4 -13
- package/dist/src/core/mark/legend.d.ts.map +1 -1
- package/dist/src/core/mark/outline-circular.d.ts.map +1 -1
- package/dist/src/core/mark/rect.d.ts +1 -1
- package/dist/src/core/mark/rect.d.ts.map +1 -1
- package/dist/src/core/mark/rule.d.ts +1 -1
- package/dist/src/core/mark/rule.d.ts.map +1 -1
- package/dist/src/core/mark/text.d.ts +1 -1
- package/dist/src/core/mark/text.d.ts.map +1 -1
- package/dist/src/core/mark/title.d.ts +1 -1
- package/dist/src/core/mark/title.d.ts.map +1 -1
- package/dist/src/core/utils/assembly.d.ts.map +1 -1
- package/dist/src/core/utils/define-plugin-track.d.ts +8 -3
- package/dist/src/core/utils/define-plugin-track.d.ts.map +1 -1
- package/dist/src/core/utils/fake-pub-sub.d.ts +11 -0
- package/dist/src/core/utils/fake-pub-sub.d.ts.map +1 -0
- package/dist/src/core/utils/text-style.d.ts +9 -9
- package/dist/src/core/utils/text-style.d.ts.map +1 -1
- package/dist/src/data-fetchers/bam/bam-data-fetcher.d.ts +1 -1
- package/dist/src/data-fetchers/bam/bam-data-fetcher.d.ts.map +1 -1
- package/dist/src/data-fetchers/bam/bam-worker.d.ts.map +1 -1
- package/dist/src/data-fetchers/bed/bed-data-fetcher.d.ts +1 -1
- package/dist/src/data-fetchers/bed/bed-data-fetcher.d.ts.map +1 -1
- package/dist/src/data-fetchers/bed/bed-worker.d.ts.map +1 -1
- package/dist/src/data-fetchers/bigwig/bigwig-data-fetcher.d.ts +15 -14
- package/dist/src/data-fetchers/bigwig/bigwig-data-fetcher.d.ts.map +1 -1
- package/dist/src/data-fetchers/csv/csv-data-fetcher.d.ts +1 -1
- package/dist/src/data-fetchers/csv/csv-data-fetcher.d.ts.map +1 -1
- package/dist/src/data-fetchers/gff/gff-data-fetcher.d.ts +1 -1
- package/dist/src/data-fetchers/gff/gff-data-fetcher.d.ts.map +1 -1
- package/dist/src/data-fetchers/gff/gff-worker.d.ts.map +1 -1
- package/dist/src/data-fetchers/index.d.ts +3 -3
- package/dist/src/data-fetchers/index.d.ts.map +1 -1
- package/dist/src/data-fetchers/json/json-data-fetcher.d.ts +28 -1
- package/dist/src/data-fetchers/json/json-data-fetcher.d.ts.map +1 -1
- package/dist/src/data-fetchers/utils.d.ts +15 -2
- package/dist/src/data-fetchers/utils.d.ts.map +1 -1
- package/dist/src/data-fetchers/vcf/vcf-data-fetcher.d.ts +4 -1
- package/dist/src/data-fetchers/vcf/vcf-data-fetcher.d.ts.map +1 -1
- package/dist/src/data-fetchers/vcf/vcf-worker.d.ts.map +1 -1
- package/dist/src/exported-utils.d.ts +0 -1
- package/dist/src/exported-utils.d.ts.map +1 -1
- package/dist/src/gosling-schema/gosling.schema.d.ts +0 -2
- package/dist/src/gosling-schema/gosling.schema.d.ts.map +1 -1
- package/dist/src/gosling-schema/gosling.schema.guards.d.ts +5 -2
- package/dist/src/gosling-schema/gosling.schema.guards.d.ts.map +1 -1
- package/dist/src/higlass/datafetcher.d.ts +2 -0
- package/dist/src/higlass/datafetcher.d.ts.map +1 -0
- package/dist/src/higlass/higlass-vendored.d.ts +1297 -0
- package/dist/src/higlass/higlass-vendored.d.ts.map +1 -0
- package/dist/src/higlass/services.d.ts +2 -0
- package/dist/src/higlass/services.d.ts.map +1 -0
- package/dist/src/higlass/tracks.d.ts +5 -0
- package/dist/src/higlass/tracks.d.ts.map +1 -0
- package/dist/src/higlass/utils.d.ts +2 -0
- package/dist/src/higlass/utils.d.ts.map +1 -0
- package/dist/src/index.d.ts +2 -5
- package/dist/src/index.d.ts.map +1 -1
- package/dist/src/interactors/cursor-2d.d.ts +10 -0
- package/dist/src/interactors/cursor-2d.d.ts.map +1 -0
- package/dist/src/interactors/cursor.d.ts +10 -0
- package/dist/src/interactors/cursor.d.ts.map +1 -0
- package/dist/src/interactors/index.d.ts +5 -0
- package/dist/src/interactors/index.d.ts.map +1 -0
- package/dist/src/interactors/pan-zoom-2d.d.ts +7 -0
- package/dist/src/interactors/pan-zoom-2d.d.ts.map +1 -0
- package/dist/src/interactors/pan-zoom.d.ts +7 -0
- package/dist/src/interactors/pan-zoom.d.ts.map +1 -0
- package/dist/src/pixi-manager/index.d.ts +2 -0
- package/dist/src/pixi-manager/index.d.ts.map +1 -0
- package/dist/src/pixi-manager/pixi-manager.d.ts +51 -0
- package/dist/src/pixi-manager/pixi-manager.d.ts.map +1 -0
- package/dist/src/tracks/brush-circular/brush-circular-plot.d.ts +23 -0
- package/dist/src/tracks/brush-circular/brush-circular-plot.d.ts.map +1 -0
- package/dist/src/tracks/brush-circular/brush-circular.d.ts +60 -0
- package/dist/src/tracks/brush-circular/brush-circular.d.ts.map +1 -0
- package/dist/src/tracks/brush-circular/index.d.ts +3 -0
- package/dist/src/tracks/brush-circular/index.d.ts.map +1 -0
- package/dist/src/tracks/brush-linear/brush-linear-plot.d.ts +18 -0
- package/dist/src/tracks/brush-linear/brush-linear-plot.d.ts.map +1 -0
- package/dist/src/tracks/brush-linear/brush-linear-track.d.ts +39 -0
- package/dist/src/tracks/brush-linear/brush-linear-track.d.ts.map +1 -0
- package/dist/src/tracks/brush-linear/index.d.ts +3 -0
- package/dist/src/tracks/brush-linear/index.d.ts.map +1 -0
- package/dist/src/tracks/dummy-track/dummy-track-plot.d.ts +6 -0
- package/dist/src/tracks/dummy-track/dummy-track-plot.d.ts.map +1 -0
- package/dist/src/tracks/dummy-track/dummy-track.d.ts +6 -10
- package/dist/src/tracks/dummy-track/dummy-track.d.ts.map +1 -1
- package/dist/src/tracks/dummy-track/index.d.ts +3 -1
- package/dist/src/tracks/dummy-track/index.d.ts.map +1 -1
- package/dist/src/tracks/genomic-axis/axis-track-plot.d.ts +21 -0
- package/dist/src/tracks/genomic-axis/axis-track-plot.d.ts.map +1 -0
- package/dist/src/tracks/genomic-axis/axis-track.d.ts +110 -0
- package/dist/src/tracks/genomic-axis/axis-track.d.ts.map +1 -0
- package/dist/src/tracks/genomic-axis/index.d.ts +3 -0
- package/dist/src/tracks/genomic-axis/index.d.ts.map +1 -0
- package/dist/src/tracks/gosling-track/gosling-track-model.d.ts.map +1 -1
- package/dist/src/tracks/gosling-track/gosling-track-plot.d.ts +28 -0
- package/dist/src/tracks/gosling-track/gosling-track-plot.d.ts.map +1 -0
- package/dist/src/tracks/gosling-track/gosling-track.d.ts +196 -10
- package/dist/src/tracks/gosling-track/gosling-track.d.ts.map +1 -1
- package/dist/src/tracks/gosling-track/index.d.ts +2 -1
- package/dist/src/tracks/gosling-track/index.d.ts.map +1 -1
- package/dist/src/tracks/{gosling-brush → gosling-track}/linear-brush-model.d.ts +1 -2
- package/dist/src/tracks/gosling-track/linear-brush-model.d.ts.map +1 -0
- package/dist/src/tracks/gosling-track/utils.d.ts +2 -0
- package/dist/src/tracks/gosling-track/utils.d.ts.map +1 -0
- package/dist/src/tracks/heatmap/heatmap-plot.d.ts +56 -0
- package/dist/src/tracks/heatmap/heatmap-plot.d.ts.map +1 -0
- package/dist/src/tracks/heatmap/index.d.ts +3 -0
- package/dist/src/tracks/heatmap/index.d.ts.map +1 -0
- package/dist/src/tracks/text-track/index.d.ts +4 -0
- package/dist/src/tracks/text-track/index.d.ts.map +1 -0
- package/dist/src/tracks/text-track/text-track-plot.d.ts +10 -0
- package/dist/src/tracks/text-track/text-track-plot.d.ts.map +1 -0
- package/dist/src/tracks/text-track/text-track.d.ts +33 -0
- package/dist/src/tracks/text-track/text-track.d.ts.map +1 -0
- package/dist/src/tracks/utils.d.ts +31 -0
- package/dist/src/tracks/utils.d.ts.map +1 -0
- package/dist/utils.js +18 -11
- package/dist/utils.js.map +1 -1
- package/package.json +44 -38
- package/dist/assets/bam-worker-Dcv_bU7t.js.map +0 -1
- package/dist/assets/bed-worker-BJN3rskf.js.map +0 -1
- package/dist/assets/gff-worker-BnsF6Ylf.js.map +0 -1
- package/dist/assets/vcf-worker-DCjwwMlo.js.map +0 -1
- package/dist/client-C0UZV21F.js +0 -61
- package/dist/client-C0UZV21F.js.map +0 -1
- package/dist/compile-DjkAkVl6.js +0 -13511
- package/dist/compile-DjkAkVl6.js.map +0 -1
- package/dist/compiler.js +0 -5
- package/dist/compiler.js.map +0 -1
- package/dist/editor/example/json-spec/basic-semantic-zoom.d.ts +0 -3
- package/dist/editor/example/json-spec/basic-semantic-zoom.d.ts.map +0 -1
- package/dist/editor/example/json-spec/cancer-variant.d.ts +0 -5
- package/dist/editor/example/json-spec/cancer-variant.d.ts.map +0 -1
- package/dist/editor/example/json-spec/circos.d.ts +0 -5
- package/dist/editor/example/json-spec/circos.d.ts.map +0 -1
- package/dist/editor/example/json-spec/circular-overview-linear-detail-views.d.ts +0 -3
- package/dist/editor/example/json-spec/circular-overview-linear-detail-views.d.ts.map +0 -1
- package/dist/editor/example/json-spec/debug.d.ts +0 -3
- package/dist/editor/example/json-spec/debug.d.ts.map +0 -1
- package/dist/editor/example/json-spec/gene-annotation.d.ts +0 -14
- package/dist/editor/example/json-spec/gene-annotation.d.ts.map +0 -1
- package/dist/editor/example/json-spec/gene-transcript.d.ts +0 -3
- package/dist/editor/example/json-spec/gene-transcript.d.ts.map +0 -1
- package/dist/editor/example/json-spec/give.d.ts +0 -3
- package/dist/editor/example/json-spec/give.d.ts.map +0 -1
- package/dist/editor/example/json-spec/gosling-data.d.ts +0 -17
- package/dist/editor/example/json-spec/gosling-data.d.ts.map +0 -1
- package/dist/editor/example/json-spec/gremlin.d.ts +0 -3
- package/dist/editor/example/json-spec/gremlin.d.ts.map +0 -1
- package/dist/editor/example/json-spec/ideograms.d.ts +0 -4
- package/dist/editor/example/json-spec/ideograms.d.ts.map +0 -1
- package/dist/editor/example/json-spec/index.d.ts +0 -35
- package/dist/editor/example/json-spec/index.d.ts.map +0 -1
- package/dist/editor/example/json-spec/layout-and-arrangement.d.ts +0 -6
- package/dist/editor/example/json-spec/layout-and-arrangement.d.ts.map +0 -1
- package/dist/editor/example/json-spec/mark-displacement.d.ts +0 -3
- package/dist/editor/example/json-spec/mark-displacement.d.ts.map +0 -1
- package/dist/editor/example/json-spec/matrix-hffc6.d.ts +0 -3
- package/dist/editor/example/json-spec/matrix-hffc6.d.ts.map +0 -1
- package/dist/editor/example/json-spec/matrix.d.ts +0 -4
- package/dist/editor/example/json-spec/matrix.d.ts.map +0 -1
- package/dist/editor/example/json-spec/mouse-event.d.ts +0 -4
- package/dist/editor/example/json-spec/mouse-event.d.ts.map +0 -1
- package/dist/editor/example/json-spec/pathogenic.d.ts +0 -4
- package/dist/editor/example/json-spec/pathogenic.d.ts.map +0 -1
- package/dist/editor/example/json-spec/perf-alignment.d.ts +0 -3
- package/dist/editor/example/json-spec/perf-alignment.d.ts.map +0 -1
- package/dist/editor/example/json-spec/pileup.d.ts +0 -4
- package/dist/editor/example/json-spec/pileup.d.ts.map +0 -1
- package/dist/editor/example/json-spec/responsive-alignment.d.ts +0 -24
- package/dist/editor/example/json-spec/responsive-alignment.d.ts.map +0 -1
- package/dist/editor/example/json-spec/responsive-track-wise-comparison.d.ts +0 -4
- package/dist/editor/example/json-spec/responsive-track-wise-comparison.d.ts.map +0 -1
- package/dist/editor/example/json-spec/responsive.d.ts +0 -7
- package/dist/editor/example/json-spec/responsive.d.ts.map +0 -1
- package/dist/editor/example/json-spec/sars-cov-2.d.ts +0 -4
- package/dist/editor/example/json-spec/sars-cov-2.d.ts.map +0 -1
- package/dist/editor/example/json-spec/semantic-zoom.d.ts +0 -9
- package/dist/editor/example/json-spec/semantic-zoom.d.ts.map +0 -1
- package/dist/editor/example/json-spec/track-template.d.ts +0 -3
- package/dist/editor/example/json-spec/track-template.d.ts.map +0 -1
- package/dist/editor/example/json-spec/visual-linking.d.ts +0 -3
- package/dist/editor/example/json-spec/visual-linking.d.ts.map +0 -1
- package/dist/editor/example/spec/visual-encoding.d.ts +0 -5
- package/dist/editor/example/spec/visual-encoding.d.ts.map +0 -1
- package/dist/src/compiler/create-higlass-models.d.ts +0 -7
- package/dist/src/compiler/create-higlass-models.d.ts.map +0 -1
- package/dist/src/compiler/gosling-to-higlass.d.ts +0 -11
- package/dist/src/compiler/gosling-to-higlass.d.ts.map +0 -1
- package/dist/src/compiler/higlass-model.d.ts +0 -82
- package/dist/src/compiler/higlass-model.d.ts.map +0 -1
- package/dist/src/core/gosling-component.d.ts +0 -36
- package/dist/src/core/gosling-component.d.ts.map +0 -1
- package/dist/src/core/gosling-component.test.d.ts +0 -2
- package/dist/src/core/gosling-component.test.d.ts.map +0 -1
- package/dist/src/core/gosling-embed.d.ts +0 -20
- package/dist/src/core/gosling-embed.d.ts.map +0 -1
- package/dist/src/core/higlass-component-wrapper.d.ts +0 -28
- package/dist/src/core/higlass-component-wrapper.d.ts.map +0 -1
- package/dist/src/core/init.d.ts +0 -5
- package/dist/src/core/init.d.ts.map +0 -1
- package/dist/src/core/utils/higlass-zoom-config.d.ts +0 -6
- package/dist/src/core/utils/higlass-zoom-config.d.ts.map +0 -1
- package/dist/src/core/utils/linking.d.ts +0 -12
- package/dist/src/core/utils/linking.d.ts.map +0 -1
- package/dist/src/exported-compiler.d.ts +0 -2
- package/dist/src/exported-compiler.d.ts.map +0 -1
- package/dist/src/higlass-schema/higlass.schema.d.ts +0 -148
- package/dist/src/higlass-schema/higlass.schema.d.ts.map +0 -1
- package/dist/src/higlass-schema/index.d.ts +0 -3
- package/dist/src/higlass-schema/index.d.ts.map +0 -1
- package/dist/src/tracks/gosling-brush/brush-track.d.ts +0 -26
- package/dist/src/tracks/gosling-brush/brush-track.d.ts.map +0 -1
- package/dist/src/tracks/gosling-brush/index.d.ts +0 -3
- package/dist/src/tracks/gosling-brush/index.d.ts.map +0 -1
- package/dist/src/tracks/gosling-brush/linear-brush-model.d.ts.map +0 -1
- package/dist/src/tracks/gosling-genomic-axis/axis-track.d.ts +0 -40
- package/dist/src/tracks/gosling-genomic-axis/axis-track.d.ts.map +0 -1
- package/dist/src/tracks/gosling-genomic-axis/index.d.ts +0 -3
- package/dist/src/tracks/gosling-genomic-axis/index.d.ts.map +0 -1
- package/dist/utils-DAef6RYs.js +0 -85
- package/dist/utils-DAef6RYs.js.map +0 -1
package/README.md
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<img width="1549" alt="teaser" src="https://user-images.githubusercontent.com/9922882/109852545-e05f3400-7c22-11eb-90f3-7371e4ddeb42.png">
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> [!WARNING]
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> Please be aware that the grammar of Gosling.js is subject to change before the v1.0.0 release.
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## Why Gosling?
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The Gosling's key features compared to existing visualization libraries and grammars are as follows:
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- [Documentation](http://gosling-lang.org/)
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- [Gosling.js Editor](https://gosling.js.org/)
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- [
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- [How-to & Tutorials](https://gosling-lang.org/tutorials/)
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- [v1 Announcement](https://gosling-lang.org/blog/v1-release)
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- [Roadmap](https://github.com/gosling-lang/gosling.js/projects/1)
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##
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## Contributing to Gosling.js
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We welcome and greatly appreciate your contribution to this project! Please read [CONTRIBUTING.md](/CONTRIBUTING.md) to find guidelines.
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## Contact
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Open [Github Issues](https://github.com/gosling-lang/gosling.js/issues/) to ask questions or request features.
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- Open [Github Issues](https://github.com/gosling-lang/gosling.js/issues/) to ask questions or request features.
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## Team
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- Sehi L'Yi ([@sehi_lyi](https://twitter.com/sehi_lyi) | <sehi_lyi@hms.harvard.edu>)
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39
|
+
- Qianwen Wang ([@WangQianwenToo](https://twitter.com/WangQianwenToo) | <qianwen_wang@hms.harvard.edu>)
|
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40
|
+
- Fritz Lekschas ([@flekschas](https://twitter.com/flekschas) | [lekschas.de](https://lekschas.de))
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41
|
+
- Trevor Manz ([@trevmanz](https://twitter.com/trevmanz) | <trevor_manz@g.harvard.edu>)
|
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42
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+
- Nils Gehlenborg ([@ngehlenborg](https://twitter.com/ngehlenborg) | <nils@hms.harvard.edu>)
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34
43
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35
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## Citation
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37
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-
[L'Yi et al., 2021. “Gosling: A Grammar-based Toolkit for Scalable and Interactive Genomics Data Visualization.”](https://
|
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46
|
+
[L'Yi et al., 2021. “Gosling: A Grammar-based Toolkit for Scalable and Interactive Genomics Data Visualization.”](https://osf.io/6evmb)
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```bib
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@article{lyi2021gosling,
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