gosling.js 1.0.1 → 1.0.2

package/dist/exported-utils-26226ee9.js

@@ -0,0 +1,89 @@
+var __defProp = Object.defineProperty;
+var __defNormalProp = (obj, key, value) => key in obj ? __defProp(obj, key, { enumerable: true, configurable: true, writable: true, value }) : obj[key] = value;
+var __publicField = (obj, key, value) => {
+  __defNormalProp(obj, typeof key !== "symbol" ? key + "" : key, value);
+  return value;
+};
+import "./exported-compiler-e419fb4a.js";
+import { bisector } from "d3-array";
+import { RemoteFile as RemoteFile$1 } from "generic-filehandle";
+function filterUsingGenoPos(data, [minX, maxX], config) {
+  const { x, xe, x1, x1e } = config;
+  const definedXFields = [x, xe, x1, x1e].filter((f) => f);
+  return data.filter((d) => {
+    if (definedXFields.length === 0) {
+      return true;
+    } else if (definedXFields.length === 1) {
+      const value = +d[definedXFields[0]];
+      return typeof value === "number" && minX < value && value <= maxX;
+    } else {
+      const values = definedXFields.map((f) => +d[f]).filter((v) => !isNaN(v));
+      const minValue = Math.min(...values);
+      const maxValue = Math.max(...values);
+      return minX <= maxValue && minValue <= maxX;
+    }
+  });
+}
+bisector((d) => d.pos).left;
+function sanitizeChrName(chrName, assembly, chromosomePrefix) {
+  if (Array.isArray(assembly)) {
+    return chrName;
+  }
+  if (chromosomePrefix) {
+    chrName = chrName.replace(chromosomePrefix, "chr");
+  } else if (!chrName.includes("chr")) {
+    chrName = `chr${chrName}`;
+  }
+  return chrName;
+}
+class RemoteFile extends RemoteFile$1 {
+  constructor() {
+    super(...arguments);
+    // Overrides `read` to eagerly read 200 or 206 response
+    // from https://github.com/GMOD/generic-filehandle/blob/0e8209be25e3097307bd15e964edd8c017e808d7/src/remoteFile.ts#L100-L162
+    __publicField(this, "read", async (buffer, offset = 0, length, position = 0, opts = {}) => {
+      const { headers = {}, signal, overrides = {} } = opts;
+      if (length < Infinity) {
+        headers.range = `bytes=${position}-${position + length}`;
+      } else if (length === Infinity && position !== 0) {
+        headers.range = `bytes=${position}-`;
+      }
+      const args = {
+        // @ts-expect-error private property
+        ...this.baseOverrides,
+        ...overrides,
+        headers: {
+          ...headers,
+          ...overrides.headers,
+          // @ts-expect-error private property
+          ...this.baseOverrides.headers
+        },
+        method: "GET",
+        redirect: "follow",
+        mode: "cors",
+        signal
+      };
+      const response = await this.fetch(this.url, args);
+      if (!response.ok) {
+        throw new Error(`HTTP ${response.status} ${response.statusText} ${this.url}`);
+      }
+      if (response.status === 200 || response.status === 206) {
+        const responseData = await this.getBufferFromResponse(response);
+        const bytesCopied = responseData.copy(buffer, offset, 0, Math.min(length, responseData.length));
+        const res = response.headers.get("content-range");
+        const sizeMatch = /\/(\d+)$/.exec(res || "");
+        if (sizeMatch && sizeMatch[1]) {
+          this._stat = { size: parseInt(sizeMatch[1], 10) };
+        }
+        return { bytesRead: bytesCopied, buffer };
+      }
+      throw new Error(`HTTP ${response.status} fetching ${this.url}`);
+    });
+  }
+}
+export {
+  RemoteFile as R,
+  filterUsingGenoPos as f,
+  sanitizeChrName as s
+};
+//# sourceMappingURL=exported-utils-26226ee9.js.map

package/dist/exported-utils-26226ee9.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"exported-utils-26226ee9.js","sources":["../src/data-fetchers/utils.ts"],"sourcesContent":["import { bisector } from 'd3-array';\nimport { RemoteFile as _RemoteFile } from 'generic-filehandle';\n\nimport type * as HiGlass from '@higlass/types';\nimport type { Assembly, ChromSizes, Datum } from '@gosling-lang/gosling-schema';\n\nexport type CommonDataConfig = {\n    assembly: Assembly;\n    x?: string;\n    xe?: string;\n    x1?: string;\n    x1e?: string;\n    urlFetchOptions?: RequestInit;\n};\n\nexport class DataSource<File, Options> {\n    chromInfo: ExtendedChromInfo;\n    tilesetInfo: ReturnType<typeof tilesetInfoFromChromInfo>;\n\n    constructor(public file: File, chromSizes: ChromSizes, public options: Options) {\n        this.chromInfo = sizesToChromInfo(chromSizes);\n        this.tilesetInfo = tilesetInfoFromChromInfo(this.chromInfo);\n    }\n}\n\n/**\n * Filter data before sending to a track considering the visible genomic area in the track.\n * TODO(2022-Jul-13): Consider genomic `y` channels as well.\n */\nexport function filterUsingGenoPos(\n    data: Datum[],\n    [minX, maxX]: [number, number],\n    config: Omit<CommonDataConfig, 'assembly'>\n) {\n    const { x, xe, x1, x1e } = config;\n    const definedXFields = [x, xe, x1, x1e].filter(f => f) as string[];\n    return data.filter((d: Datum) => {\n        if (definedXFields.length === 0) {\n            // no filter applies\n            return true;\n        } else if (definedXFields.length === 1) {\n            // filter based on one genomic position\n            const value = +d[definedXFields[0]];\n            return typeof value === 'number' && minX < value && value <= maxX;\n        } else {\n            // filter based on two genomic positions, i.e., check overlaps\n            const values = definedXFields.map(f => +d[f]).filter(v => !isNaN(v));\n            const minValue = Math.min(...values);\n            const maxValue = Math.max(...values);\n            return minX <= maxValue && minValue <= maxX;\n        }\n    });\n}\n\nconst chromInfoBisector = bisector((d: { pos: number }) => d.pos).left;\n\nconst chrToAbs = (chrom: string, chromPos: number, chromInfo: HiGlass.ChromInfo) =>\n    chromInfo.chrPositions[chrom].pos + chromPos;\n\nconst absToChr = (absPosition: number, chromInfo: HiGlass.ChromInfo) => {\n    if (!chromInfo || !chromInfo.cumPositions || !chromInfo.cumPositions.length) {\n        return null;\n    }\n\n    let insertPoint = chromInfoBisector(chromInfo.cumPositions, absPosition);\n    const lastChr = chromInfo.cumPositions[chromInfo.cumPositions.length - 1].chr;\n    const lastLength = chromInfo.chromLengths[lastChr];\n\n    // @ts-expect-error\n    insertPoint -= insertPoint > 0 && 1;\n\n    let chrPosition = Math.floor(absPosition - chromInfo.cumPositions[insertPoint].pos);\n    let offset = 0;\n\n    if (chrPosition < 0) {\n        // before the start of the genome\n        offset = chrPosition - 1;\n        chrPosition = 1;\n    }\n\n    if (insertPoint === chromInfo.cumPositions.length - 1 && chrPosition > lastLength) {\n        // beyond the last chromosome\n        offset = chrPosition - lastLength;\n        chrPosition = lastLength;\n    }\n\n    return [chromInfo.cumPositions[insertPoint].chr, chrPosition, offset, insertPoint] as const;\n};\n\n/**\n * Get a chromosome name for the consistentcy, e.g., `1` --> `chr1`.\n * @param chrName A chromosome name to be sanitized\n * @param assembly A genome assembly of the data\n * @param chromosomePrefix A prefix string that can be replaced to 'chr'\n * @returns\n */\nexport function sanitizeChrName(chrName: string, assembly: Assembly, chromosomePrefix?: string) {\n    if (Array.isArray(assembly)) {\n        // this is a custom assembly, so use this as is\n        return chrName;\n    }\n\n    // For assemblies in Gosling, we use the `chr` prefix consistently\n    if (chromosomePrefix) {\n        // `hs1` --> `chr1`\n        chrName = chrName.replace(chromosomePrefix, 'chr');\n    } else if (!chrName.includes('chr')) {\n        // `1` --> `chr1`\n        chrName = `chr${chrName}`;\n    }\n    return chrName;\n}\n\nexport type ExtendedChromInfo = HiGlass.ChromInfo & {\n    absToChr(absPos: number): ReturnType<typeof absToChr> | null;\n    chrToAbs(chr: [name: string, pos: number]): number | null;\n};\n\nexport function tilesetInfoFromChromInfo(chromInfo: ExtendedChromInfo, tileSize = 1024) {\n    return {\n        tile_size: tileSize,\n        bins_per_dimension: tileSize,\n        max_zoom: Math.ceil(Math.log(chromInfo.totalLength / tileSize) / Math.log(2)),\n        max_width: chromInfo.totalLength,\n        min_pos: [0],\n        max_pos: [chromInfo.totalLength]\n    };\n}\n\nexport function sizesToChromInfo(sizes: [string, number][]): ExtendedChromInfo {\n    const info: HiGlass.ChromInfo = {\n        cumPositions: [],\n        chromLengths: {},\n        chrPositions: {},\n        totalLength: 0\n    };\n\n    sizes.forEach(([chr, length], i) => {\n        const chrPosition = { id: i, chr, pos: info.totalLength };\n        info.chrPositions[chr] = chrPosition;\n        info.chromLengths[chr] = length;\n        info.cumPositions.push(chrPosition);\n        info.totalLength += length;\n    });\n\n    return {\n        ...info,\n        absToChr: absPos => (info.chrPositions ? absToChr(absPos, info) : null),\n        chrToAbs: ([chrName, chrPos]) => (info.chrPositions ? chrToAbs(chrName, chrPos, info) : null)\n    };\n}\n\nexport class RemoteFile extends _RemoteFile {\n    // Overrides `read` to eagerly read 200 or 206 response\n    // from https://github.com/GMOD/generic-filehandle/blob/0e8209be25e3097307bd15e964edd8c017e808d7/src/remoteFile.ts#L100-L162\n    public read: _RemoteFile['read'] = async (\n        buffer,\n        offset = 0,\n        length,\n        position = 0,\n        opts = {}\n    ): Promise<{ bytesRead: number; buffer: Buffer }> => {\n        const { headers = {}, signal, overrides = {} } = opts;\n\n        if (length < Infinity) {\n            headers.range = `bytes=${position}-${position + length}`;\n        } else if (length === Infinity && position !== 0) {\n            headers.range = `bytes=${position}-`;\n        }\n        const args = {\n            // @ts-expect-error private property\n            ...this.baseOverrides,\n            ...overrides,\n            headers: {\n                ...headers,\n                ...overrides.headers,\n                // @ts-expect-error private property\n                ...this.baseOverrides.headers\n            },\n            method: 'GET',\n            redirect: 'follow',\n            mode: 'cors',\n            signal\n        };\n        const response = await this.fetch(this.url, args);\n\n        if (!response.ok) {\n            throw new Error(`HTTP ${response.status} ${response.statusText} ${this.url}`);\n        }\n\n        // Just read the response if it was successful.\n        if (response.status === 200 || response.status === 206) {\n            // @ts-expect-error private method\n            const responseData = await this.getBufferFromResponse(response);\n            const bytesCopied = responseData.copy(buffer, offset, 0, Math.min(length, responseData.length));\n\n            // try to parse out the size of the remote file\n            const res = response.headers.get('content-range');\n            const sizeMatch = /\\/(\\d+)$/.exec(res || '');\n            if (sizeMatch && sizeMatch[1]) {\n                // @ts-expect-error private property\n                this._stat = { size: parseInt(sizeMatch[1], 10) };\n            }\n\n            return { bytesRead: bytesCopied, buffer };\n        }\n\n        // TODO: try harder here to gather more information about what the problem is\n        throw new Error(`HTTP ${response.status} fetching ${this.url}`);\n    };\n}\n\nexport interface TabularDataFetcher<Tile> {\n    getTabularData(tileIds: string[]): Promise<Tile[]>;\n    MAX_TILE_WIDTH?: number;\n}\n"],"names":["_RemoteFile"],"mappings":";;;;;;;;;AA6BO,SAAS,mBACZ,MACA,CAAC,MAAM,IAAI,GACX,QACF;AACE,QAAM,EAAE,GAAG,IAAI,IAAI,QAAQ;AACrB,QAAA,iBAAiB,CAAC,GAAG,IAAI,IAAI,GAAG,EAAE,OAAO,CAAA,MAAK,CAAC;AAC9C,SAAA,KAAK,OAAO,CAAC,MAAa;AACzB,QAAA,eAAe,WAAW,GAAG;AAEtB,aAAA;AAAA,IAAA,WACA,eAAe,WAAW,GAAG;AAEpC,YAAM,QAAQ,CAAC,EAAE,eAAe,CAAC,CAAC;AAClC,aAAO,OAAO,UAAU,YAAY,OAAO,SAAS,SAAS;AAAA,IAAA,OAC1D;AAEH,YAAM,SAAS,eAAe,IAAI,CAAA,MAAK,CAAC,EAAE,CAAC,CAAC,EAAE,OAAO,CAAA,MAAK,CAAC,MAAM,CAAC,CAAC;AACnE,YAAM,WAAW,KAAK,IAAI,GAAG,MAAM;AACnC,YAAM,WAAW,KAAK,IAAI,GAAG,MAAM;AAC5B,aAAA,QAAQ,YAAY,YAAY;AAAA,IAC3C;AAAA,EAAA,CACH;AACL;AAE0B,SAAS,CAAC,MAAuB,EAAE,GAAG,EAAE;AA0ClD,SAAA,gBAAgB,SAAiB,UAAoB,kBAA2B;AACxF,MAAA,MAAM,QAAQ,QAAQ,GAAG;AAElB,WAAA;AAAA,EACX;AAGA,MAAI,kBAAkB;AAER,cAAA,QAAQ,QAAQ,kBAAkB,KAAK;AAAA,EAC1C,WAAA,CAAC,QAAQ,SAAS,KAAK,GAAG;AAEjC,cAAU,MAAM,OAAO;AAAA,EAC3B;AACO,SAAA;AACX;AAyCO,MAAM,mBAAmBA,aAAY;AAAA,EAArC;AAAA;AAGI;AAAA;AAAA,gCAA4B,OAC/B,QACA,SAAS,GACT,QACA,WAAW,GACX,OAAO,OAC0C;AAC3C,YAAA,EAAE,UAAU,IAAI,QAAQ,YAAY,CAAA,EAAO,IAAA;AAEjD,UAAI,SAAS,UAAU;AACnB,gBAAQ,QAAQ,SAAS,QAAQ,IAAI,WAAW,MAAM;AAAA,MAC/C,WAAA,WAAW,YAAY,aAAa,GAAG;AACtC,gBAAA,QAAQ,SAAS,QAAQ;AAAA,MACrC;AACA,YAAM,OAAO;AAAA;AAAA,QAET,GAAG,KAAK;AAAA,QACR,GAAG;AAAA,QACH,SAAS;AAAA,UACL,GAAG;AAAA,UACH,GAAG,UAAU;AAAA;AAAA,UAEb,GAAG,KAAK,cAAc;AAAA,QAC1B;AAAA,QACA,QAAQ;AAAA,QACR,UAAU;AAAA,QACV,MAAM;AAAA,QACN;AAAA,MAAA;AAEJ,YAAM,WAAW,MAAM,KAAK,MAAM,KAAK,KAAK,IAAI;AAE5C,UAAA,CAAC,SAAS,IAAI;AACR,cAAA,IAAI,MAAM,QAAQ,SAAS,MAAM,IAAI,SAAS,UAAU,IAAI,KAAK,GAAG,EAAE;AAAA,MAChF;AAGA,UAAI,SAAS,WAAW,OAAO,SAAS,WAAW,KAAK;AAEpD,cAAM,eAAe,MAAM,KAAK,sBAAsB,QAAQ;AACxD,cAAA,cAAc,aAAa,KAAK,QAAQ,QAAQ,GAAG,KAAK,IAAI,QAAQ,aAAa,MAAM,CAAC;AAG9F,cAAM,MAAM,SAAS,QAAQ,IAAI,eAAe;AAChD,cAAM,YAAY,WAAW,KAAK,OAAO,EAAE;AACvC,YAAA,aAAa,UAAU,CAAC,GAAG;AAEtB,eAAA,QAAQ,EAAE,MAAM,SAAS,UAAU,CAAC,GAAG,EAAE;QAClD;AAEO,eAAA,EAAE,WAAW,aAAa;MACrC;AAGM,YAAA,IAAI,MAAM,QAAQ,SAAS,MAAM,aAAa,KAAK,GAAG,EAAE;AAAA,IAAA;AAAA;AAEtE;"}

package/dist/gosling.js

@@ -34,8 +34,8 @@ import "bezier-js";
 import { scaleLinear, scaleSequential, scaleOrdinal, scaleBand } from "d3-scale";
 import { sampleSize, isEqual, uniqBy, cloneDeepWith } from "lodash-es";
 import { interpolateViridis } from "d3-scale-chromatic";
-import { g as getTextStyle, c as computeChromSizes, a as cartesianToPolar, u as uuid, R as RADIAN_GAP, v as valueToRadian, p as pointsToDegree, b as commonjsGlobal, d as RemoteFile, I as IsOneOfFilter, e as IsRangeFilter, f as IsIncludeFilter, h as getChannelKeysByAggregateFnc, i as getChannelKeysByType, j as IsChannelDeep, s as sanitizeChrName, k as filterUsingGenoPos, l as IsDataDeepTileset, m as isThereTheme, n as getTheme$1, H as HIGLASS_AXIS_SIZE, S as SUPPORTED_CHANNELS, o as getGenomicChannelKeyFromTrack, q as getGenomicChannelFromTrack, r as IsChannelValue, t as logicalComparison, w as getValueUsingChannel, x as rectProperty, y as pointProperty, z as barProperty, A as IsStackedChannel, B as IsDomainArray, C as getNumericDomain, P as PREDEFINED_COLOR_STR_MAP, D as IsRangeArray, E as validateTrack, F as Is2DTrack, G as isTabularDataFetcher, J as drawPreEmbellishment, K as drawMark, L as drawPostEmbellishment, M as getRelativeGenomicPosition, N as shareScaleAcrossTracks, O as hasDataTransform, Q as resolveSuperposedTracks, T as IsXAxis, U as IsMouseEventsDeep, V as colorToHex, W as flatArrayToPairArray, X as GenomicPositionHelper, Y as isObject, Z as validateGoslingSpec, _ as compile, $ as GoslingTemplates } from "./exported-utils-ce57b459.js";
-import { a0, a1 } from "./exported-utils-ce57b459.js";
+import { g as getTextStyle, c as computeChromSizes, a as cartesianToPolar, u as uuid, R as RADIAN_GAP, v as valueToRadian, p as pointsToDegree, b as commonjsGlobal, I as IsOneOfFilter, d as IsRangeFilter, e as IsIncludeFilter, f as getChannelKeysByAggregateFnc, h as getChannelKeysByType, i as IsChannelDeep, j as IsDataDeepTileset, k as isThereTheme, l as getTheme$1, H as HIGLASS_AXIS_SIZE, S as SUPPORTED_CHANNELS, m as getGenomicChannelKeyFromTrack, n as getGenomicChannelFromTrack, o as IsChannelValue, q as logicalComparison, r as getValueUsingChannel, s as rectProperty, t as pointProperty, w as barProperty, x as IsStackedChannel, y as IsDomainArray, z as getNumericDomain, P as PREDEFINED_COLOR_STR_MAP, A as IsRangeArray, B as validateTrack, C as Is2DTrack, D as isTabularDataFetcher, E as drawPreEmbellishment, F as drawMark, G as drawPostEmbellishment, J as getRelativeGenomicPosition, K as shareScaleAcrossTracks, L as hasDataTransform, M as resolveSuperposedTracks, N as IsXAxis, O as IsMouseEventsDeep, Q as colorToHex, T as flatArrayToPairArray, U as GenomicPositionHelper, V as isObject, W as validateGoslingSpec, X as compile, Y as GoslingTemplates } from "./exported-compiler-e419fb4a.js";
+import { Z, _ } from "./exported-compiler-e419fb4a.js";
 import higlassRegister from "higlass-register";
 import { TextTrack } from "higlass-text";
 import RBush from "rbush";
@@ -46,6 +46,7 @@ import { spawn } from "threads";
 import { Buffer as Buffer2 } from "buffer";
 import QuickLRU from "quick-lru";
 import { RemoteFile as RemoteFile$1, LocalFile } from "generic-filehandle";
+import { R as RemoteFile, s as sanitizeChrName, f as filterUsingGenoPos } from "./exported-utils-26226ee9.js";
 import { dsvFormat } from "d3-dsv";
 import PubSub$1 from "pubsub-js";
 import React, { forwardRef, useState, useEffect, useMemo, useRef, useImperativeHandle, useCallback } from "react";
@@ -53,7 +54,7 @@ import require$$0 from "react-dom";
 import { HiGlassComponent } from "higlass";
 import { ResizeSensor } from "css-element-queries";
 const name = "gosling.js";
-const version = "1.0.1";
+const version = "1.0.2";
 const $ref = "#/definitions/Theme";
 const $schema = "http://json-schema.org/draft-07/schema#";
 const definitions = {
@@ -1354,7 +1355,7 @@ const isCircleWithinRange = (range, x, radius = 5) => {
   return isPointInsideRange(range, x - radius) && isPointInsideRange(range, x + radius);
 };
 const isAllPointsWithinRange = (range, path) => {
-  return path.filter((_, i) => i % 2 === 0).every((x) => isPointInsideRange(range, x));
+  return path.filter((_2, i) => i % 2 === 0).every((x) => isPointInsideRange(range, x));
 };
 const isPointNearLine = ([x, y], path, dist = 5) => {
   let x1;
@@ -1444,19 +1445,19 @@ class MouseEventModel {
    * Find the first event data that is within the mouse position.
    */
   find(x, y, reverse = false) {
-    const _ = Array.from(this.data);
+    const _2 = Array.from(this.data);
     if (reverse)
-      _.reverse();
-    return _.find((d) => this.isMouseWithin(d, x, y));
+      _2.reverse();
+    return _2.find((d) => this.isMouseWithin(d, x, y));
   }
   /**
    * Find all event data that is within the mouse position.
    */
   findAll(x, y, reverse = false) {
-    const _ = Array.from(this.data);
+    const _2 = Array.from(this.data);
     if (reverse)
-      _.reverse();
-    return _.filter((d) => this.isMouseWithin(d, x, y));
+      _2.reverse();
+    return _2.filter((d) => this.isMouseWithin(d, x, y));
   }
   /**
    * Find all event data that matches the id values in the source and return them.
@@ -1467,7 +1468,7 @@ class MouseEventModel {
     source.forEach((s) => {
       const id = s.value[idField];
       if (id) {
-        siblings.push(...this.data.filter((_) => _.value[idField] === id && sourceUids.indexOf(_.uid) === -1));
+        siblings.push(...this.data.filter((_2) => _2.value[idField] === id && sourceUids.indexOf(_2.uid) === -1));
       }
     });
     return siblings;
@@ -1490,10 +1491,10 @@ class MouseEventModel {
    * Find all event data that is within the range along the x-axis.
    */
   findAllWithinRange(x1, x2, reverse = false) {
-    const _ = Array.from(this.data);
+    const _2 = Array.from(this.data);
     if (reverse)
-      _.reverse();
-    return _.filter((d) => this.isWithinRange(d, x1, x2));
+      _2.reverse();
+    return _2.filter((d) => this.isWithinRange(d, x1, x2));
   }
   /**
    * Test if a given object is within an 1D range.
@@ -1772,7 +1773,7 @@ class Context {
     });
   }
   getUnresolvedReferences() {
-    return Array.from(this.references).filter(([_, reference]) => !reference.resolved && !reference.requested).map(([alias, _]) => alias);
+    return Array.from(this.references).filter(([_2, reference]) => !reference.resolved && !reference.requested).map(([alias, _2]) => alias);
   }
 }
 const aliasRegistry = /* @__PURE__ */ new Map();
@@ -3140,7 +3141,7 @@ function abortableFetchDecorator(patchTargets) {
       if (signal.aborted) {
         return Promise.reject(abortError);
       }
-      var cancellation = new Promise(function(_, reject) {
+      var cancellation = new Promise(function(_2, reject) {
         signal.addEventListener("abort", function() {
           return reject(abortError);
         }, {
@@ -9086,8 +9087,8 @@ function concatString(concat, data) {
   });
   return output;
 }
-function replaceString(_, data) {
-  const { field, replace, newField } = _;
+function replaceString(_2, data) {
+  const { field, replace, newField } = _2;
   let output = Array.from(data);
   output = output.map((d) => {
     d[newField] = d[field];
@@ -9114,8 +9115,8 @@ function calculateData(log, data) {
   });
   return output;
 }
-function calculateGenomicLength(_, data) {
-  const { startField, endField, newField } = _;
+function calculateGenomicLength(_2, data) {
+  const { startField, endField, newField } = _2;
   const output = Array.from(data);
   output.forEach((d) => {
     const s = d[startField];
@@ -9127,8 +9128,8 @@ function calculateGenomicLength(_, data) {
   });
   return output;
 }
-function inferSvType(_, data) {
-  const { firstBp, secondBp, newField } = _;
+function inferSvType(_2, data) {
+  const { firstBp, secondBp, newField } = _2;
   const output = Array.from(data);
   const [DUP, TRA, DEL, t2tINV, h2hINV] = ["DUP", "TRA", "DEL", "t2tINV", "h2hINV"];
   output.forEach((d) => {
@@ -9169,8 +9170,8 @@ function inferSvType(_, data) {
   });
   return output;
 }
-function aggregateCoverage(_, data, scale) {
-  const { startField, endField, newField, groupField } = _;
+function aggregateCoverage(_2, data, scale) {
+  const { startField, endField, newField, groupField } = _2;
   const coverage = {};
   const binSize = 1;
   data.forEach((d) => {
@@ -9304,8 +9305,8 @@ function splitExon(split, data, assembly = "hg38") {
   }).reduce((a, b) => a.concat(b), []);
   return output;
 }
-function parseSubJSON(_, data) {
-  const { field, genomicField, baseGenomicField, genomicLengthField } = _;
+function parseSubJSON(_2, data) {
+  const { field, genomicField, baseGenomicField, genomicLengthField } = _2;
   let output = Array.from(data);
   output = output.map((d) => {
     let newRows = JSON.parse(d[field]);
@@ -12572,7 +12573,7 @@ const preverseZoomStatus = (newSpec, prevSpec) => {
     if (isNewView) {
       const { locksByViewUid } = newSpec.zoomLocks;
       const lockUid = locksByViewUid[viewUid];
-      const linkedViewUid = (_a = Object.entries(locksByViewUid).find(([_, uid]) => _ && uid === lockUid)) == null ? void 0 : _a[0];
+      const linkedViewUid = (_a = Object.entries(locksByViewUid).find(([_2, uid]) => _2 && uid === lockUid)) == null ? void 0 : _a[0];
       const linkedViewExistedPrev = !!prevSpec.views.find((v) => v.uid === linkedViewUid);
       if (linkedViewUid && linkedViewExistedPrev) {
         view.initialXDomain = (_b = prevSpec.views.find((v) => v.uid === linkedViewUid)) == null ? void 0 : _b.initialXDomain;
@@ -12798,7 +12799,7 @@ function embed(element, spec, opts = {}) {
     };
     compile(
       spec,
-      async (hsSpec, size, _, trackInfos, idTable) => {
+      async (hsSpec, size, _2, trackInfos, idTable) => {
         const hg = await launchHiglass(element, hsSpec, size, options);
         const api = createApi(hg, hsSpec, trackInfos, theme, idTable);
         resolve(api);
@@ -12813,10 +12814,10 @@ function embed(element, spec, opts = {}) {
 }
 export {
   GoslingComponent,
-  a0 as GoslingSchema,
+  Z as GoslingSchema,
   GoslingTemplates,
   theme_schema as ThemeSchema,
-  a1 as Themes,
+  _ as Themes,
   compile,
   embed,
   getTheme$1 as getTheme,