gosling.js 0.17.0 → 1.0.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +5 -15
- package/dist/editor/example/json-spec/mouse-event.d.ts.map +1 -1
- package/dist/{exported-utils-c7f92c46.js → exported-utils-51b5f19f.js} +11 -98
- package/dist/exported-utils-51b5f19f.js.map +1 -0
- package/dist/gosling.js +190 -393
- package/dist/gosling.js.map +1 -1
- package/dist/src/compiler/compile.d.ts.map +1 -1
- package/dist/src/compiler/spec-preprocess.d.ts +1 -13
- package/dist/src/compiler/spec-preprocess.d.ts.map +1 -1
- package/dist/src/core/gosling-component.d.ts +4 -4
- package/dist/src/core/gosling-component.d.ts.map +1 -1
- package/dist/src/core/utils/overlay.d.ts.map +1 -1
- package/dist/src/core/utils/template.d.ts.map +1 -1
- package/dist/src/gosling-schema/gosling.schema.d.ts +3 -18
- package/dist/src/gosling-schema/gosling.schema.d.ts.map +1 -1
- package/dist/src/gosling-schema/gosling.schema.guards.d.ts +1 -3
- package/dist/src/gosling-schema/gosling.schema.guards.d.ts.map +1 -1
- package/dist/src/tracks/gosling-track/gosling-track.d.ts.map +1 -1
- package/dist/utils.js +6 -6
- package/package.json +1 -1
- package/dist/exported-utils-c7f92c46.js.map +0 -1
package/dist/gosling.js
CHANGED
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@@ -34,7 +34,7 @@ import "bezier-js";
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import { scaleLinear, scaleSequential, scaleOrdinal, scaleBand } from "d3-scale";
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import { sampleSize, isEqual, uniqBy, cloneDeepWith } from "lodash-es";
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import { interpolateViridis } from "d3-scale-chromatic";
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import { A as Ajv, I as IsChannelDeep, r as resolveSuperposedTracks, t as traverseTracks, a as IsTemplateTrack, g as getTextStyle, c as computeChromSizes, b as cartesianToPolar, u as uuid, R as RADIAN_GAP, v as valueToRadian, p as pointsToDegree, d as commonjsGlobal, e as RemoteFile, f as IsOneOfFilter, h as IsRangeFilter, i as IsIncludeFilter, j as getChannelKeysByAggregateFnc, k as getChannelKeysByType, s as sanitizeChrName, l as filterUsingGenoPos, m as IsDataDeepTileset, n as IsDomainChr, o as IsDomainInterval, q as IsDomainChrInterval, S as SUPPORTED_CHANNELS, w as insertItemToArray, x as getAutoCompleteObject, y as IsChannelValue, z as getValueUsingChannel, B as rectProperty, C as pointProperty, D as barProperty, E as IsStackedChannel, F as IsDomainArray, P as PREDEFINED_COLOR_STR_MAP, G as IsRangeArray, H as Is2DTrack, J as isTabularDataFetcher, K as drawPreEmbellishment, L as drawMark, M as drawPostEmbellishment, N as getRelativeGenomicPosition, O as hasDataTransform, Q as IsXAxis, T as IsMouseEventsDeep, U as colorToHex, V as flatArrayToPairArray, W as DEWFAULT_TITLE_PADDING_ON_TOP_AND_BOTTOM, X as traverseTracksAndViews, Y as traverseViewArrangements, Z as DEFAULT_VIEW_SPACING, _ as DEFAULT_INNER_RADIUS_PROP, $ as IsDummyTrack, a0 as IsOverlaidTrack, a1 as IsYAxis, a2 as DEFAULT_CIRCULAR_VIEW_PADDING, a3 as IsDataDeep, a4 as IsHiGlassMatrix, a5 as getHiGlassColorRange, a6 as DEFAULT_TEXT_STYLE, a7 as
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import { A as Ajv, I as IsChannelDeep, r as resolveSuperposedTracks, t as traverseTracks, a as IsTemplateTrack, g as getTextStyle, c as computeChromSizes, b as cartesianToPolar, u as uuid, R as RADIAN_GAP, v as valueToRadian, p as pointsToDegree, d as commonjsGlobal, e as RemoteFile, f as IsOneOfFilter, h as IsRangeFilter, i as IsIncludeFilter, j as getChannelKeysByAggregateFnc, k as getChannelKeysByType, s as sanitizeChrName, l as filterUsingGenoPos, m as IsDataDeepTileset, n as IsDomainChr, o as IsDomainInterval, q as IsDomainChrInterval, S as SUPPORTED_CHANNELS, w as insertItemToArray, x as getAutoCompleteObject, y as IsChannelValue, z as getValueUsingChannel, B as rectProperty, C as pointProperty, D as barProperty, E as IsStackedChannel, F as IsDomainArray, P as PREDEFINED_COLOR_STR_MAP, G as IsRangeArray, H as Is2DTrack, J as isTabularDataFetcher, K as drawPreEmbellishment, L as drawMark, M as drawPostEmbellishment, N as getRelativeGenomicPosition, O as hasDataTransform, Q as IsXAxis, T as IsMouseEventsDeep, U as colorToHex, V as flatArrayToPairArray, W as DEWFAULT_TITLE_PADDING_ON_TOP_AND_BOTTOM, X as traverseTracksAndViews, Y as traverseViewArrangements, Z as DEFAULT_VIEW_SPACING, _ as DEFAULT_INNER_RADIUS_PROP, $ as IsDummyTrack, a0 as IsOverlaidTrack, a1 as IsYAxis, a2 as DEFAULT_CIRCULAR_VIEW_PADDING, a3 as IsDataDeep, a4 as IsHiGlassMatrix, a5 as getHiGlassColorRange, a6 as DEFAULT_TEXT_STYLE, a7 as traverseToFixSpecDownstream, a8 as GenomicPositionHelper, a9 as isObject } from "./exported-utils-51b5f19f.js";
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import higlassRegister from "higlass-register";
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import { TextTrack } from "higlass-text";
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import RBush from "rbush";
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@@ -52,7 +52,7 @@ import require$$0 from "react-dom";
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import { HiGlassComponent } from "higlass";
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import { ResizeSensor } from "css-element-queries";
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const name = "gosling.js";
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const version = "0.
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const version = "1.0.0";
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const $ref$2 = "#/definitions/GoslingSpec";
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const $schema$2 = "http://json-schema.org/draft-07/schema#";
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const definitions$2 = {
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@@ -613,152 +613,6 @@ const definitions$2 = {
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}
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]
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},
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DataTrack: {
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additionalProperties: false,
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description: "Partial specification of `BasicSingleTrack` to use default visual encoding predefined by data type.",
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properties: {
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_assignedHeight: {
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type: "number"
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},
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_assignedWidth: {
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description: "Internal: Used for responsive spec",
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type: "number"
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},
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_invalidTrack: {
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description: "internal",
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type: "boolean"
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},
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_renderingId: {
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description: "internal",
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type: "string"
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},
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assembly: {
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$ref: "#/definitions/Assembly",
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description: 'A string that specifies the genome builds to use. Currently support `"hg38"`, `"hg19"`, `"hg18"`, `"hg17"`, `"hg16"`, `"mm10"`, `"mm9"`, and `"unknown"`.\n\n__Note:__: with `"unknown"` assembly, genomic axes do not show chrN: in labels.'
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},
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centerRadius: {
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description: "Proportion of the radius of the center white space.\n\n__Default:__ `0.3`",
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type: "number"
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},
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data: {
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$ref: "#/definitions/DataDeep"
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},
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endAngle: {
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description: 'Specify the end angle (in the range of [0, 360]) of circular tracks (`{"layout": "circular"}`).',
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type: "number"
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},
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height: {
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description: "Specify the track height in pixels.",
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type: "number"
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},
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id: {
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description: "Assigned to `uid` in a HiGlass view config, used for API and caching.",
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type: "string"
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},
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innerRadius: {
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description: 'Specify the inner radius of tracks when (`{"layout": "circular"}`).',
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type: "number"
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},
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layout: {
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$ref: "#/definitions/Layout",
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description: "Specify the layout type of all tracks."
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},
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linkingId: {
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description: "Specify an ID for [linking multiple views](http://gosling-lang.org/docs/user-interaction#linking-views)",
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type: "string"
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},
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orientation: {
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$ref: "#/definitions/Orientation",
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description: "Specify the orientation."
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},
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outerRadius: {
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description: 'Specify the outer radius of tracks when `{"layout": "circular"}`.',
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type: "number"
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},
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overlayOnPreviousTrack: {
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type: "boolean"
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},
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prerelease: {
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additionalProperties: false,
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description: "internal",
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type: "object"
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},
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spacing: {
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description: "The size of the gap (1) between tracks, (2) between views, and (3) of the origin of circular tracks. The effect of this property depends on where on the spec you specify the `spacing`.\n\nIn a linear layout, this value is used in pixels, while in a circular layout, this value is used relative to the height of the tracks or views.",
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type: "number"
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},
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startAngle: {
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description: 'Specify the start angle (in the range of [0, 360]) of circular tracks (`{"layout": "circular"}`).',
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type: "number"
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},
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"static": {
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description: "Whether to disable [Zooming and Panning](http://gosling-lang.org/docs/user-interaction#zooming-and-panning), __Default:__ `false`.",
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type: "boolean"
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},
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style: {
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$ref: "#/definitions/Style",
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description: "Define the [style](http://gosling-lang.org/docs/visual-channel#style-related-properties) of multive views. Will be overwritten by the style of children elements (e.g., view, track)."
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},
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subtitle: {
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type: "string"
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},
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title: {
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description: "If defined, will show the textual label on the left-top corner of a track.",
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type: "string"
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},
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width: {
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description: "Specify the track width in pixels.",
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type: "number"
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xAxis: {
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$ref: "#/definitions/AxisPosition",
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description: "not supported"
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},
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description: "Specify the visible region of genomic x-axis"
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}
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},
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required: [
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description: "Render visual marks with less smooth curves to increase rendering performance. Only supported for `elliptical` `linkStyle` `withinLink` currently.",
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description: "Render visual marks with less smooth curves to increase rendering performance. Only supported for `elliptical` `linkStyle` `withinLink` currently.",
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@@ -3812,7 +3651,7 @@ const definitions$2 = {
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@@ -4236,6 +4065,16 @@ const definitions$2 = {
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@@ -4257,9 +4096,6 @@ const definitions$2 = {
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@@ -4518,16 +4354,6 @@ const definitions$2 = {
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description: "Render visual marks with less smooth curves to increase rendering performance. Only supported for `elliptical` `linkStyle` `withinLink` currently.",
|
|
@@ -4571,6 +4397,16 @@ const definitions$2 = {
|
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$ref: "#/definitions/Mark"
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},
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{
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|
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@@ -4592,9 +4428,6 @@ const definitions$2 = {
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|
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|
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@@ -4883,16 +4716,6 @@ const definitions$2 = {
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|
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|
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|
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|
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{
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|
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|
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|
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|
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|
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|
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|
description: "Render visual marks with less smooth curves to increase rendering performance. Only supported for `elliptical` `linkStyle` `withinLink` currently.",
|
|
@@ -4936,6 +4759,16 @@ const definitions$2 = {
|
|
|
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|
mark: {
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|
$ref: "#/definitions/Mark"
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|
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|
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|
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|
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{
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|
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},
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|
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{
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|
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}
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|
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|
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{
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@@ -4957,9 +4790,6 @@ const definitions$2 = {
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|
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|
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@@ -5266,16 +5096,6 @@ const definitions$2 = {
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|
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|
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|
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|
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{
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|
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|
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},
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|
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{
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|
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$ref: "#/definitions/MouseEventsDeep"
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|
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}
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|
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|
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|
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|
description: "Render visual marks with less smooth curves to increase rendering performance. Only supported for `elliptical` `linkStyle` `withinLink` currently.",
|
|
@@ -5311,6 +5131,16 @@ const definitions$2 = {
|
|
|
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|
mark: {
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|
$ref: "#/definitions/Mark"
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|
},
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|
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|
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|
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+
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|
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},
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|
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{
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|
+
$ref: "#/definitions/MouseEventsDeep"
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|
+
}
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|
+
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|
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|
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|
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|
{
|
|
@@ -5332,9 +5162,6 @@ const definitions$2 = {
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|
overlayOnPreviousTrack: {
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|
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|
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|
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|
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|
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|
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|
@@ -5609,16 +5436,6 @@ const definitions$2 = {
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|
experimental: {
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|
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|
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|
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|
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|
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{
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|
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|
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},
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|
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{
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|
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$ref: "#/definitions/MouseEventsDeep"
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|
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}
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|
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|
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},
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|
performanceMode: {
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|
"default": false,
|
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|
description: "Render visual marks with less smooth curves to increase rendering performance. Only supported for `elliptical` `linkStyle` `withinLink` currently.",
|
|
@@ -5672,6 +5489,16 @@ const definitions$2 = {
|
|
|
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|
mark: {
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|
$ref: "#/definitions/Mark"
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|
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|
},
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|
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|
+
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|
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|
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|
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|
+
type: "boolean"
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|
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|
+
},
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|
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|
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{
|
|
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|
+
$ref: "#/definitions/MouseEventsDeep"
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|
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|
+
}
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|
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|
+
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|
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},
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|
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|
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|
{
|
|
@@ -5693,9 +5520,6 @@ const definitions$2 = {
|
|
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|
overlayOnPreviousTrack: {
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|
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|
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},
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|
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|
description: "internal",
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@@ -6163,16 +5987,6 @@ const definitions$2 = {
|
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|
experimental: {
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additionalProperties: false,
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|
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|
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|
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{
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|
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|
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type: "boolean"
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|
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|
-
},
|
|
6171
|
-
{
|
|
6172
|
-
$ref: "#/definitions/MouseEventsDeep"
|
|
6173
|
-
}
|
|
6174
|
-
]
|
|
6175
|
-
},
|
|
6176
5990
|
performanceMode: {
|
|
6177
5991
|
"default": false,
|
|
6178
5992
|
description: "Render visual marks with less smooth curves to increase rendering performance. Only supported for `elliptical` `linkStyle` `withinLink` currently.",
|
|
@@ -6216,6 +6030,16 @@ const definitions$2 = {
|
|
|
6216
6030
|
mark: {
|
|
6217
6031
|
$ref: "#/definitions/Mark"
|
|
6218
6032
|
},
|
|
6033
|
+
mouseEvents: {
|
|
6034
|
+
anyOf: [
|
|
6035
|
+
{
|
|
6036
|
+
type: "boolean"
|
|
6037
|
+
},
|
|
6038
|
+
{
|
|
6039
|
+
$ref: "#/definitions/MouseEventsDeep"
|
|
6040
|
+
}
|
|
6041
|
+
]
|
|
6042
|
+
},
|
|
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6043
|
opacity: {
|
|
6220
6044
|
anyOf: [
|
|
6221
6045
|
{
|
|
@@ -6237,9 +6061,6 @@ const definitions$2 = {
|
|
|
6237
6061
|
overlayOnPreviousTrack: {
|
|
6238
6062
|
type: "boolean"
|
|
6239
6063
|
},
|
|
6240
|
-
overrideTemplate: {
|
|
6241
|
-
type: "boolean"
|
|
6242
|
-
},
|
|
6243
6064
|
prerelease: {
|
|
6244
6065
|
additionalProperties: false,
|
|
6245
6066
|
description: "internal",
|
|
@@ -6531,16 +6352,6 @@ const definitions$2 = {
|
|
|
6531
6352
|
experimental: {
|
|
6532
6353
|
additionalProperties: false,
|
|
6533
6354
|
properties: {
|
|
6534
|
-
mouseEvents: {
|
|
6535
|
-
anyOf: [
|
|
6536
|
-
{
|
|
6537
|
-
type: "boolean"
|
|
6538
|
-
},
|
|
6539
|
-
{
|
|
6540
|
-
$ref: "#/definitions/MouseEventsDeep"
|
|
6541
|
-
}
|
|
6542
|
-
]
|
|
6543
|
-
},
|
|
6544
6355
|
performanceMode: {
|
|
6545
6356
|
"default": false,
|
|
6546
6357
|
description: "Render visual marks with less smooth curves to increase rendering performance. Only supported for `elliptical` `linkStyle` `withinLink` currently.",
|
|
@@ -6584,6 +6395,16 @@ const definitions$2 = {
|
|
|
6584
6395
|
mark: {
|
|
6585
6396
|
$ref: "#/definitions/Mark"
|
|
6586
6397
|
},
|
|
6398
|
+
mouseEvents: {
|
|
6399
|
+
anyOf: [
|
|
6400
|
+
{
|
|
6401
|
+
type: "boolean"
|
|
6402
|
+
},
|
|
6403
|
+
{
|
|
6404
|
+
$ref: "#/definitions/MouseEventsDeep"
|
|
6405
|
+
}
|
|
6406
|
+
]
|
|
6407
|
+
},
|
|
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6408
|
opacity: {
|
|
6588
6409
|
anyOf: [
|
|
6589
6410
|
{
|
|
@@ -6605,9 +6426,6 @@ const definitions$2 = {
|
|
|
6605
6426
|
overlayOnPreviousTrack: {
|
|
6606
6427
|
type: "boolean"
|
|
6607
6428
|
},
|
|
6608
|
-
overrideTemplate: {
|
|
6609
|
-
type: "boolean"
|
|
6610
|
-
},
|
|
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6429
|
prerelease: {
|
|
6612
6430
|
additionalProperties: false,
|
|
6613
6431
|
description: "internal",
|
|
@@ -6688,16 +6506,6 @@ const definitions$2 = {
|
|
|
6688
6506
|
experimental: {
|
|
6689
6507
|
additionalProperties: false,
|
|
6690
6508
|
properties: {
|
|
6691
|
-
mouseEvents: {
|
|
6692
|
-
anyOf: [
|
|
6693
|
-
{
|
|
6694
|
-
type: "boolean"
|
|
6695
|
-
},
|
|
6696
|
-
{
|
|
6697
|
-
$ref: "#/definitions/MouseEventsDeep"
|
|
6698
|
-
}
|
|
6699
|
-
]
|
|
6700
|
-
},
|
|
6701
6509
|
performanceMode: {
|
|
6702
6510
|
"default": false,
|
|
6703
6511
|
description: "Render visual marks with less smooth curves to increase rendering performance. Only supported for `elliptical` `linkStyle` `withinLink` currently.",
|
|
@@ -6741,6 +6549,16 @@ const definitions$2 = {
|
|
|
6741
6549
|
mark: {
|
|
6742
6550
|
$ref: "#/definitions/Mark"
|
|
6743
6551
|
},
|
|
6552
|
+
mouseEvents: {
|
|
6553
|
+
anyOf: [
|
|
6554
|
+
{
|
|
6555
|
+
type: "boolean"
|
|
6556
|
+
},
|
|
6557
|
+
{
|
|
6558
|
+
$ref: "#/definitions/MouseEventsDeep"
|
|
6559
|
+
}
|
|
6560
|
+
]
|
|
6561
|
+
},
|
|
6744
6562
|
opacity: {
|
|
6745
6563
|
anyOf: [
|
|
6746
6564
|
{
|
|
@@ -6762,9 +6580,6 @@ const definitions$2 = {
|
|
|
6762
6580
|
overlayOnPreviousTrack: {
|
|
6763
6581
|
type: "boolean"
|
|
6764
6582
|
},
|
|
6765
|
-
overrideTemplate: {
|
|
6766
|
-
type: "boolean"
|
|
6767
|
-
},
|
|
6768
6583
|
prerelease: {
|
|
6769
6584
|
additionalProperties: false,
|
|
6770
6585
|
description: "internal",
|
|
@@ -7310,16 +7125,6 @@ const definitions$2 = {
|
|
|
7310
7125
|
experimental: {
|
|
7311
7126
|
additionalProperties: false,
|
|
7312
7127
|
properties: {
|
|
7313
|
-
mouseEvents: {
|
|
7314
|
-
anyOf: [
|
|
7315
|
-
{
|
|
7316
|
-
type: "boolean"
|
|
7317
|
-
},
|
|
7318
|
-
{
|
|
7319
|
-
$ref: "#/definitions/MouseEventsDeep"
|
|
7320
|
-
}
|
|
7321
|
-
]
|
|
7322
|
-
},
|
|
7323
7128
|
performanceMode: {
|
|
7324
7129
|
"default": false,
|
|
7325
7130
|
description: "Render visual marks with less smooth curves to increase rendering performance. Only supported for `elliptical` `linkStyle` `withinLink` currently.",
|
|
@@ -7363,6 +7168,16 @@ const definitions$2 = {
|
|
|
7363
7168
|
mark: {
|
|
7364
7169
|
$ref: "#/definitions/Mark"
|
|
7365
7170
|
},
|
|
7171
|
+
mouseEvents: {
|
|
7172
|
+
anyOf: [
|
|
7173
|
+
{
|
|
7174
|
+
type: "boolean"
|
|
7175
|
+
},
|
|
7176
|
+
{
|
|
7177
|
+
$ref: "#/definitions/MouseEventsDeep"
|
|
7178
|
+
}
|
|
7179
|
+
]
|
|
7180
|
+
},
|
|
7366
7181
|
opacity: {
|
|
7367
7182
|
anyOf: [
|
|
7368
7183
|
{
|
|
@@ -7384,9 +7199,6 @@ const definitions$2 = {
|
|
|
7384
7199
|
overlayOnPreviousTrack: {
|
|
7385
7200
|
type: "boolean"
|
|
7386
7201
|
},
|
|
7387
|
-
overrideTemplate: {
|
|
7388
|
-
type: "boolean"
|
|
7389
|
-
},
|
|
7390
7202
|
prerelease: {
|
|
7391
7203
|
additionalProperties: false,
|
|
7392
7204
|
description: "internal",
|
|
@@ -7467,16 +7279,6 @@ const definitions$2 = {
|
|
|
7467
7279
|
experimental: {
|
|
7468
7280
|
additionalProperties: false,
|
|
7469
7281
|
properties: {
|
|
7470
|
-
mouseEvents: {
|
|
7471
|
-
anyOf: [
|
|
7472
|
-
{
|
|
7473
|
-
type: "boolean"
|
|
7474
|
-
},
|
|
7475
|
-
{
|
|
7476
|
-
$ref: "#/definitions/MouseEventsDeep"
|
|
7477
|
-
}
|
|
7478
|
-
]
|
|
7479
|
-
},
|
|
7480
7282
|
performanceMode: {
|
|
7481
7283
|
"default": false,
|
|
7482
7284
|
description: "Render visual marks with less smooth curves to increase rendering performance. Only supported for `elliptical` `linkStyle` `withinLink` currently.",
|
|
@@ -7520,6 +7322,16 @@ const definitions$2 = {
|
|
|
7520
7322
|
mark: {
|
|
7521
7323
|
$ref: "#/definitions/Mark"
|
|
7522
7324
|
},
|
|
7325
|
+
mouseEvents: {
|
|
7326
|
+
anyOf: [
|
|
7327
|
+
{
|
|
7328
|
+
type: "boolean"
|
|
7329
|
+
},
|
|
7330
|
+
{
|
|
7331
|
+
$ref: "#/definitions/MouseEventsDeep"
|
|
7332
|
+
}
|
|
7333
|
+
]
|
|
7334
|
+
},
|
|
7523
7335
|
opacity: {
|
|
7524
7336
|
anyOf: [
|
|
7525
7337
|
{
|
|
@@ -7541,9 +7353,6 @@ const definitions$2 = {
|
|
|
7541
7353
|
overlayOnPreviousTrack: {
|
|
7542
7354
|
type: "boolean"
|
|
7543
7355
|
},
|
|
7544
|
-
overrideTemplate: {
|
|
7545
|
-
type: "boolean"
|
|
7546
|
-
},
|
|
7547
7356
|
prerelease: {
|
|
7548
7357
|
additionalProperties: false,
|
|
7549
7358
|
description: "internal",
|
|
@@ -8142,16 +7951,6 @@ const definitions$2 = {
|
|
|
8142
7951
|
experimental: {
|
|
8143
7952
|
additionalProperties: false,
|
|
8144
7953
|
properties: {
|
|
8145
|
-
mouseEvents: {
|
|
8146
|
-
anyOf: [
|
|
8147
|
-
{
|
|
8148
|
-
type: "boolean"
|
|
8149
|
-
},
|
|
8150
|
-
{
|
|
8151
|
-
$ref: "#/definitions/MouseEventsDeep"
|
|
8152
|
-
}
|
|
8153
|
-
]
|
|
8154
|
-
},
|
|
8155
7954
|
performanceMode: {
|
|
8156
7955
|
"default": false,
|
|
8157
7956
|
description: "Render visual marks with less smooth curves to increase rendering performance. Only supported for `elliptical` `linkStyle` `withinLink` currently.",
|
|
@@ -8195,6 +7994,16 @@ const definitions$2 = {
|
|
|
8195
7994
|
mark: {
|
|
8196
7995
|
$ref: "#/definitions/Mark"
|
|
8197
7996
|
},
|
|
7997
|
+
mouseEvents: {
|
|
7998
|
+
anyOf: [
|
|
7999
|
+
{
|
|
8000
|
+
type: "boolean"
|
|
8001
|
+
},
|
|
8002
|
+
{
|
|
8003
|
+
$ref: "#/definitions/MouseEventsDeep"
|
|
8004
|
+
}
|
|
8005
|
+
]
|
|
8006
|
+
},
|
|
8198
8007
|
opacity: {
|
|
8199
8008
|
anyOf: [
|
|
8200
8009
|
{
|
|
@@ -8216,9 +8025,6 @@ const definitions$2 = {
|
|
|
8216
8025
|
overlayOnPreviousTrack: {
|
|
8217
8026
|
type: "boolean"
|
|
8218
8027
|
},
|
|
8219
|
-
overrideTemplate: {
|
|
8220
|
-
type: "boolean"
|
|
8221
|
-
},
|
|
8222
8028
|
prerelease: {
|
|
8223
8029
|
additionalProperties: false,
|
|
8224
8030
|
description: "internal",
|
|
@@ -9230,9 +9036,6 @@ const definitions$2 = {
|
|
|
9230
9036
|
{
|
|
9231
9037
|
$ref: "#/definitions/OverlaidTrack"
|
|
9232
9038
|
},
|
|
9233
|
-
{
|
|
9234
|
-
$ref: "#/definitions/DataTrack"
|
|
9235
|
-
},
|
|
9236
9039
|
{
|
|
9237
9040
|
$ref: "#/definitions/TemplateTrack"
|
|
9238
9041
|
},
|
|
@@ -10219,6 +10022,9 @@ function replaceTrackTemplates(spec, templates) {
|
|
|
10219
10022
|
if ("encoding" in viewBase) {
|
|
10220
10023
|
delete viewBase.encoding;
|
|
10221
10024
|
}
|
|
10025
|
+
if ("template" in viewBase) {
|
|
10026
|
+
delete viewBase.template;
|
|
10027
|
+
}
|
|
10222
10028
|
const convertedView = {
|
|
10223
10029
|
...viewBase,
|
|
10224
10030
|
alignment: "overlay",
|
|
@@ -24450,7 +24256,8 @@ const factory$1 = (HGC, context, options) => {
|
|
|
24450
24256
|
__privateAdd(this, _onMouseUp);
|
|
24451
24257
|
__privateAdd(this, _onMouseOut);
|
|
24452
24258
|
/**
|
|
24453
|
-
* From all tiles and overlaid tracks, collect element(s) that are
|
|
24259
|
+
* From all tiles and overlaid tracks, collect element(s) that are within a mouse position.
|
|
24260
|
+
* In the array, the first element is the element that is directly within the mouse position.
|
|
24454
24261
|
*/
|
|
24455
24262
|
__privateAdd(this, _getElementsWithinMouse);
|
|
24456
24263
|
/**
|
|
@@ -25156,7 +24963,7 @@ const factory$1 = (HGC, context, options) => {
|
|
|
25156
24963
|
* Called by showHoverMenu() in HiGlassComponent
|
|
25157
24964
|
*/
|
|
25158
24965
|
getMouseOverHtml(mouseX, mouseY) {
|
|
25159
|
-
var _a, _b, _c, _d
|
|
24966
|
+
var _a, _b, _c, _d;
|
|
25160
24967
|
__privateMethod(this, _publishTrackEvents, publishTrackEvents_fn).call(this, "trackMouseOver", mouseX, mouseY);
|
|
25161
24968
|
if (__privateGet(this, _isRangeBrushActivated)) {
|
|
25162
24969
|
return "";
|
|
@@ -25173,15 +24980,15 @@ const factory$1 = (HGC, context, options) => {
|
|
|
25173
24980
|
document.body.style.cursor = "default";
|
|
25174
24981
|
}
|
|
25175
24982
|
if (capturedElements.length !== 0) {
|
|
25176
|
-
const mouseEvents =
|
|
24983
|
+
const mouseEvents = this.options.spec.mouseEvents;
|
|
25177
24984
|
const mouseOverEnabled = !!mouseEvents || IsMouseEventsDeep(mouseEvents) && !!mouseEvents.mouseOver;
|
|
25178
24985
|
if (mouseOverEnabled) {
|
|
25179
24986
|
const g = this.pMouseHover;
|
|
25180
|
-
if (((
|
|
24987
|
+
if (((_b = (_a = this.options.spec.style) == null ? void 0 : _a.mouseOver) == null ? void 0 : _b.arrange) !== "behind") {
|
|
25181
24988
|
this.pMain.removeChild(g);
|
|
25182
24989
|
this.pMain.addChild(g);
|
|
25183
24990
|
}
|
|
25184
|
-
__privateMethod(this, _highlightMarks, highlightMarks_fn).call(this, g, capturedElements, Object.assign({}, DEFAULT_MOUSE_EVENT_STYLE, (
|
|
24991
|
+
__privateMethod(this, _highlightMarks, highlightMarks_fn).call(this, g, capturedElements, Object.assign({}, DEFAULT_MOUSE_EVENT_STYLE, (_c = this.options.spec.style) == null ? void 0 : _c.mouseOver));
|
|
25185
24992
|
publish("mouseOver", {
|
|
25186
24993
|
id: context.viewUid,
|
|
25187
24994
|
genomicPosition,
|
|
@@ -25189,10 +24996,10 @@ const factory$1 = (HGC, context, options) => {
|
|
|
25189
24996
|
});
|
|
25190
24997
|
}
|
|
25191
24998
|
const models = this.visibleAndFetchedGoslingModels();
|
|
25192
|
-
const firstTooltipSpec = (
|
|
24999
|
+
const firstTooltipSpec = (_d = models.find((m2) => {
|
|
25193
25000
|
var _a2;
|
|
25194
25001
|
return m2.spec().tooltip && ((_a2 = m2.spec().tooltip) == null ? void 0 : _a2.length) !== 0;
|
|
25195
|
-
})) == null ? void 0 :
|
|
25002
|
+
})) == null ? void 0 : _d.spec().tooltip;
|
|
25196
25003
|
if (firstTooltipSpec) {
|
|
25197
25004
|
let content = firstTooltipSpec.map((d) => {
|
|
25198
25005
|
var _a2;
|
|
@@ -25207,9 +25014,6 @@ const factory$1 = (HGC, context, options) => {
|
|
|
25207
25014
|
return `<tr><td style='padding: 4px 8px'>${(_a2 = d.alt) != null ? _a2 : d.field}</td><td style='padding: 4px 8px'><b>${value}</b></td></tr>`;
|
|
25208
25015
|
}).join("");
|
|
25209
25016
|
content = `<table style='text-align: left; margin-top: 12px'>${content}</table>`;
|
|
25210
|
-
if (capturedElements.length > 1) {
|
|
25211
|
-
content += `<div style='padding: 4px 8px; margin-top: 4px; text-align: center; color: grey'>${capturedElements.length - 1} Additional Selections...</div>`;
|
|
25212
|
-
}
|
|
25213
25017
|
return `<div>${content}</div>`;
|
|
25214
25018
|
}
|
|
25215
25019
|
}
|
|
@@ -25364,10 +25168,9 @@ const factory$1 = (HGC, context, options) => {
|
|
|
25364
25168
|
};
|
|
25365
25169
|
_onMouseDown = new WeakSet();
|
|
25366
25170
|
onMouseDown_fn = function(mouseX, mouseY, isAltPressed) {
|
|
25367
|
-
var _a;
|
|
25368
25171
|
__privateSet(this, _mouseDownX, mouseX);
|
|
25369
25172
|
__privateSet(this, _mouseDownY, mouseY);
|
|
25370
|
-
const mouseEvents =
|
|
25173
|
+
const mouseEvents = this.options.spec.mouseEvents;
|
|
25371
25174
|
const rangeSelectEnabled = !!mouseEvents || IsMouseEventsDeep(mouseEvents) && !!mouseEvents.rangeSelect;
|
|
25372
25175
|
__privateSet(this, _isRangeBrushActivated, rangeSelectEnabled && isAltPressed);
|
|
25373
25176
|
this.pMouseHover.clear();
|
|
@@ -25383,9 +25186,8 @@ const factory$1 = (HGC, context, options) => {
|
|
|
25383
25186
|
};
|
|
25384
25187
|
_onMouseUp = new WeakSet();
|
|
25385
25188
|
onMouseUp_fn = function(mouseX, mouseY) {
|
|
25386
|
-
var _a;
|
|
25387
25189
|
__privateMethod(this, _publishTrackEvents, publishTrackEvents_fn).call(this, "trackClick", mouseX, mouseY);
|
|
25388
|
-
const mouseEvents =
|
|
25190
|
+
const mouseEvents = this.options.spec.mouseEvents;
|
|
25389
25191
|
const clickEnabled = !!mouseEvents || IsMouseEventsDeep(mouseEvents) && !!mouseEvents.click;
|
|
25390
25192
|
const isDrag = Math.sqrt((__privateGet(this, _mouseDownX) - mouseX) ** 2 + (__privateGet(this, _mouseDownY) - mouseY) ** 2) > 1;
|
|
25391
25193
|
if (!__privateGet(this, _isRangeBrushActivated) && !isDrag) {
|
|
@@ -25423,9 +25225,8 @@ const factory$1 = (HGC, context, options) => {
|
|
|
25423
25225
|
};
|
|
25424
25226
|
_getElementsWithinMouse = new WeakSet();
|
|
25425
25227
|
getElementsWithinMouse_fn = function(mouseX, mouseY) {
|
|
25426
|
-
var _a;
|
|
25427
25228
|
const models = this.visibleAndFetchedGoslingModels();
|
|
25428
|
-
const mouseEvents =
|
|
25229
|
+
const mouseEvents = this.options.spec.mouseEvents;
|
|
25429
25230
|
const multiHovering = IsMouseEventsDeep(mouseEvents) && mouseEvents.enableMouseOverOnMultipleMarks;
|
|
25430
25231
|
const idField = IsMouseEventsDeep(mouseEvents) && mouseEvents.groupMarksByField;
|
|
25431
25232
|
const mergedCapturedElements = models.map((model) => model.getMouseEventModel().findAll(mouseX, mouseY, true)).flat();
|
|
@@ -25474,7 +25275,7 @@ const factory$1 = (HGC, context, options) => {
|
|
|
25474
25275
|
};
|
|
25475
25276
|
_onRangeBrush = new WeakSet();
|
|
25476
25277
|
onRangeBrush_fn = function(range, skipApiTrigger = false) {
|
|
25477
|
-
var _a, _b, _c
|
|
25278
|
+
var _a, _b, _c;
|
|
25478
25279
|
this.pMouseSelection.clear();
|
|
25479
25280
|
if (range === null) {
|
|
25480
25281
|
if (!skipApiTrigger) {
|
|
@@ -25485,7 +25286,7 @@ const factory$1 = (HGC, context, options) => {
|
|
|
25485
25286
|
const models = this.visibleAndFetchedGoslingModels();
|
|
25486
25287
|
const [startX, endX] = range;
|
|
25487
25288
|
let capturedElements = models.map((model) => model.getMouseEventModel().findAllWithinRange(startX, endX, true)).flat();
|
|
25488
|
-
const mouseEvents =
|
|
25289
|
+
const mouseEvents = this.options.spec.mouseEvents;
|
|
25489
25290
|
const idField = IsMouseEventsDeep(mouseEvents) && mouseEvents.groupMarksByField;
|
|
25490
25291
|
if (capturedElements.length !== 0 && idField) {
|
|
25491
25292
|
models.forEach((model) => {
|
|
@@ -25496,11 +25297,11 @@ const factory$1 = (HGC, context, options) => {
|
|
|
25496
25297
|
}
|
|
25497
25298
|
if (capturedElements.length !== 0) {
|
|
25498
25299
|
const g = this.pMouseSelection;
|
|
25499
|
-
if (((
|
|
25300
|
+
if (((_b = (_a = this.options.spec.style) == null ? void 0 : _a.select) == null ? void 0 : _b.arrange) !== "behind") {
|
|
25500
25301
|
this.pMain.removeChild(g);
|
|
25501
25302
|
this.pMain.addChild(g);
|
|
25502
25303
|
}
|
|
25503
|
-
__privateMethod(this, _highlightMarks, highlightMarks_fn).call(this, g, capturedElements, Object.assign({}, DEFAULT_MOUSE_EVENT_STYLE, (
|
|
25304
|
+
__privateMethod(this, _highlightMarks, highlightMarks_fn).call(this, g, capturedElements, Object.assign({}, DEFAULT_MOUSE_EVENT_STYLE, (_c = this.options.spec.style) == null ? void 0 : _c.select));
|
|
25504
25305
|
}
|
|
25505
25306
|
if (!skipApiTrigger) {
|
|
25506
25307
|
const genomicRange = [
|
|
@@ -25546,7 +25347,7 @@ const factory$1 = (HGC, context, options) => {
|
|
|
25546
25347
|
};
|
|
25547
25348
|
_hasStretchableGraphics = new WeakSet();
|
|
25548
25349
|
hasStretchableGraphics_fn = function() {
|
|
25549
|
-
var _a
|
|
25350
|
+
var _a;
|
|
25550
25351
|
const hasStretchOption = (_a = this.options.spec.experimental) == null ? void 0 : _a.stretchGraphics;
|
|
25551
25352
|
if (hasStretchOption === true) {
|
|
25552
25353
|
return true;
|
|
@@ -25560,7 +25361,7 @@ const factory$1 = (HGC, context, options) => {
|
|
|
25560
25361
|
(acc, spec) => acc && stretchableMarks.includes(spec.mark),
|
|
25561
25362
|
true
|
|
25562
25363
|
);
|
|
25563
|
-
const noMouseInteractions = !
|
|
25364
|
+
const noMouseInteractions = !this.options.spec.mouseEvents;
|
|
25564
25365
|
return isFirstTrack1D && isNotCircularLayout && hasStretchableMark && noMouseInteractions;
|
|
25565
25366
|
};
|
|
25566
25367
|
_isTooStretched = new WeakSet();
|
|
@@ -25882,7 +25683,7 @@ function getNumOfYAxes(tracks) {
|
|
|
25882
25683
|
const getTextTrack = (size, title, subtitle) => {
|
|
25883
25684
|
return JSON.parse(
|
|
25884
25685
|
JSON.stringify({
|
|
25885
|
-
mark: "
|
|
25686
|
+
mark: "_header",
|
|
25886
25687
|
width: size.width,
|
|
25887
25688
|
height: size.height,
|
|
25888
25689
|
title,
|
|
@@ -26046,7 +25847,7 @@ function goslingToHiGlass(hgModel, gosTrack, bb, layout, theme, idMapper, urlToF
|
|
|
26046
25847
|
}
|
|
26047
25848
|
});
|
|
26048
25849
|
hgModel.validateSpec(true);
|
|
26049
|
-
} else if (firstResolvedSpec.mark === "
|
|
25850
|
+
} else if (firstResolvedSpec.mark === "_header") {
|
|
26050
25851
|
hgModel.addDefaultView(`${trackId}-title`).setLayout(layout);
|
|
26051
25852
|
if (typeof firstResolvedSpec.title === "string") {
|
|
26052
25853
|
hgModel.setTextTrack(
|
|
@@ -26331,7 +26132,6 @@ function isSelectResponsiveSpec(conditions, assignedDimensions, parentDimensions
|
|
|
26331
26132
|
function compile(spec, callback, templates, theme, containerStatus, urlToFetchOptions) {
|
|
26332
26133
|
var _a, _b;
|
|
26333
26134
|
const specCopy = JSON.parse(JSON.stringify(spec));
|
|
26334
|
-
overrideDataTemplates(specCopy);
|
|
26335
26135
|
replaceTrackTemplates(specCopy, templates);
|
|
26336
26136
|
traverseToFixSpecDownstream(specCopy);
|
|
26337
26137
|
const trackInfosAndSize = getRelativeTrackInfo(specCopy, theme);
|
|
@@ -26348,10 +26148,6 @@ function compile(spec, callback, templates, theme, containerStatus, urlToFetchOp
|
|
|
26348
26148
|
traverseToFixSpecDownstream(specCopy);
|
|
26349
26149
|
trackInfos = getRelativeTrackInfo(specCopy, theme).trackInfos;
|
|
26350
26150
|
}
|
|
26351
|
-
publish("specProcessed", {
|
|
26352
|
-
id: specCopy.id,
|
|
26353
|
-
spec: specCopy
|
|
26354
|
-
});
|
|
26355
26151
|
renderHiGlass(specCopy, trackInfos, callback, theme, urlToFetchOptions);
|
|
26356
26152
|
}
|
|
26357
26153
|
init();
|
|
@@ -26594,6 +26390,7 @@ const preverseZoomStatus = (newSpec, prevSpec) => {
|
|
|
26594
26390
|
const DELAY_FOR_CONTAINER_RESIZE_BEFORE_RERENDER = 300;
|
|
26595
26391
|
const GoslingComponent = forwardRef((props, ref) => {
|
|
26596
26392
|
var _a, _b, _c;
|
|
26393
|
+
const { reactive = true } = props;
|
|
26597
26394
|
const [viewConfig, setViewConfig] = useState();
|
|
26598
26395
|
const [isInitialRender, setIsInitialRender] = useState(true);
|
|
26599
26396
|
const [size, setSize] = useState({ width: 200, height: 200 });
|
|
@@ -26636,21 +26433,21 @@ const GoslingComponent = forwardRef((props, ref) => {
|
|
|
26636
26433
|
compile(
|
|
26637
26434
|
spec,
|
|
26638
26435
|
(newHiGlassSpec, newSize, newGoslingSpec, newTracksAndViews, newIdTable) => {
|
|
26639
|
-
var _a2
|
|
26436
|
+
var _a2;
|
|
26640
26437
|
if (prevSpec.current && isEqual(omitDeep(prevSpec.current, ["linkingId"]), omitDeep(newGoslingSpec, ["linkingId"]))) {
|
|
26641
26438
|
return;
|
|
26642
26439
|
}
|
|
26643
26440
|
(_a2 = props.compiled) == null ? void 0 : _a2.call(props, spec, newHiGlassSpec, { _processedSpec: newGoslingSpec });
|
|
26644
26441
|
setSize(newSize);
|
|
26645
26442
|
const isMountedOnce = typeof viewConfig !== "undefined";
|
|
26646
|
-
if (
|
|
26443
|
+
if (reactive && isMountedOnce) {
|
|
26647
26444
|
setTimeout(() => {
|
|
26648
|
-
var _a3,
|
|
26445
|
+
var _a3, _b2;
|
|
26649
26446
|
preverseZoomStatus(
|
|
26650
26447
|
newHiGlassSpec,
|
|
26651
26448
|
(_a3 = hgRef.current) == null ? void 0 : _a3.api.getViewConfig()
|
|
26652
26449
|
);
|
|
26653
|
-
(
|
|
26450
|
+
(_b2 = hgRef.current) == null ? void 0 : _b2.api.setViewConfig(newHiGlassSpec);
|
|
26654
26451
|
}, DELAY_FOR_CONTAINER_RESIZE_BEFORE_RERENDER);
|
|
26655
26452
|
} else {
|
|
26656
26453
|
setViewConfig(newHiGlassSpec);
|