gnosys 5.6.0 → 5.7.1

package/dist/lib/chat/tools.js

@@ -0,0 +1,338 @@
+/**
+ * Chat-side tool catalog.
+ *
+ * The LLM in `gnosys chat` can call gnosys functions directly via a fenced
+ * protocol (gnosys-tool). Each tool is a small read-only query into the
+ * central DB; the result is injected back into the conversation as a system
+ * turn before the LLM's next response.
+ *
+ * Why a fenced protocol instead of native tool_use APIs:
+ * - Provider-agnostic: works with Anthropic, OpenAI, Groq, Ollama, LM Studio,
+ *   and anything that streams plain text. Same approach as gnosys-choose.
+ * - Same in-process function calls the MCP server uses internally — no MCP
+ *   roundtrip, no schema duplication.
+ * - The model can chain tool calls naturally (call list_projects, then
+ *   briefing on a name) because each tool result is a normal turn.
+ *
+ * Format the model emits:
+ *
+ *   ```gnosys-tool
+ *   tool: list_projects
+ *   ```
+ *
+ *   ```gnosys-tool
+ *   tool: search
+ *   query: ULID encoding
+ *   limit: 5
+ *   ```
+ *
+ *   ```gnosys-tool
+ *   tool: read
+ *   id: deci-037
+ *   ```
+ *
+ * The fence syntax is parsed by toolFence.ts.
+ */
+import { GnosysDB } from "../db.js";
+import { federatedSearch } from "../federated.js";
+const TOOLS = [
+    {
+        name: "list_projects",
+        description: "List every registered project across the central DB",
+        params: {},
+        run: async () => {
+            const db = GnosysDB.openCentral();
+            try {
+                const projects = db.getAllProjects();
+                if (projects.length === 0)
+                    return "No projects registered.";
+                const lines = ["Projects:"];
+                for (const p of projects) {
+                    const memCount = db.getMemoriesByProject(p.id).length;
+                    lines.push(`- ${p.name} (id: \`${p.id}\`, ${memCount} active memories) — ${p.working_directory}`);
+                }
+                return lines.join("\n");
+            }
+            finally {
+                db.close();
+            }
+        },
+    },
+    {
+        name: "search",
+        description: "Search memories by free text. Federated across project/user/global with tier boosting.",
+        params: {
+            query: "the search string (required)",
+            limit: "max results (default 10)",
+            project_id: "optional — filter to a project ID",
+        },
+        run: async (args) => {
+            if (!args.query)
+                return "Error: `query` is required for the search tool.";
+            const db = GnosysDB.openCentral();
+            try {
+                const results = federatedSearch(db, args.query, {
+                    limit: args.limit ? parseInt(args.limit, 10) : 10,
+                    projectId: args.project_id ?? null,
+                });
+                if (results.length === 0)
+                    return `No matches for "${args.query}".`;
+                const lines = [`Results for "${args.query}" (${results.length}):`];
+                for (const r of results) {
+                    const score = r.score.toFixed(2);
+                    lines.push(`- [${r.id}] ${r.title} (${r.scope}, score=${score})`);
+                    lines.push(`    ${r.snippet.slice(0, 140)}${r.snippet.length > 140 ? "..." : ""}`);
+                }
+                return lines.join("\n");
+            }
+            finally {
+                db.close();
+            }
+        },
+    },
+    {
+        name: "read",
+        description: "Read a specific memory by ID. Use after `search` to fetch full content.",
+        params: {
+            id: "the memory ID (required)",
+        },
+        run: async (args) => {
+            if (!args.id)
+                return "Error: `id` is required for the read tool.";
+            const db = GnosysDB.openCentral();
+            try {
+                const mem = db.getMemory(args.id);
+                if (!mem)
+                    return `Memory not found: \`${args.id}\``;
+                const tags = (() => {
+                    try {
+                        const t = JSON.parse(mem.tags || "[]");
+                        return Array.isArray(t) ? t.join(", ") : "—";
+                    }
+                    catch {
+                        return "—";
+                    }
+                })();
+                return [
+                    `# ${mem.title}`,
+                    `id: ${mem.id} · category: ${mem.category} · scope: ${mem.scope} · confidence: ${mem.confidence}`,
+                    `tags: ${tags}`,
+                    "",
+                    mem.content,
+                ].join("\n");
+            }
+            finally {
+                db.close();
+            }
+        },
+    },
+    {
+        name: "briefing",
+        description: "Generate a project briefing — categories, recent activity, top tags. Pass project_id OR project_name (current project if neither given).",
+        params: {
+            project_id: "the project ID (optional)",
+            project_name: "the project name (optional, looked up if id not given)",
+        },
+        run: async (args) => {
+            const db = GnosysDB.openCentral();
+            try {
+                const { generateBriefing, detectCurrentProject } = await import("../federated.js");
+                let pid = args.project_id ?? null;
+                if (!pid && args.project_name) {
+                    const all = db.getAllProjects();
+                    const found = all.find((p) => p.name === args.project_name);
+                    if (found)
+                        pid = found.id;
+                }
+                if (!pid)
+                    pid = await detectCurrentProject(db, undefined);
+                if (!pid)
+                    return "No project specified or detected.";
+                const briefing = generateBriefing(db, pid);
+                if (!briefing)
+                    return `Project not found: ${pid}`;
+                return briefing.summary;
+            }
+            finally {
+                db.close();
+            }
+        },
+    },
+    {
+        name: "stats",
+        description: "Memory counts by project (active, archived, reinforcements). The 'how many memories?' tool.",
+        params: {},
+        run: async () => {
+            const db = GnosysDB.openCentral();
+            try {
+                const projects = db.getAllProjects();
+                const all = db.getAllMemories();
+                const lines = ["Project statistics:"];
+                let totalActive = 0;
+                for (const p of projects) {
+                    const ms = all.filter((m) => m.project_id === p.id);
+                    const active = ms.filter((m) => m.tier === "active" && m.status === "active").length;
+                    const archived = ms.filter((m) => m.tier === "archive").length;
+                    totalActive += active;
+                    lines.push(`- ${p.name}: ${active} active, ${archived} archived`);
+                }
+                const userScope = all.filter((m) => !m.project_id && m.scope === "user").length;
+                const globalScope = all.filter((m) => !m.project_id && m.scope === "global").length;
+                if (userScope > 0)
+                    lines.push(`- (user-scope): ${userScope}`);
+                if (globalScope > 0)
+                    lines.push(`- (global): ${globalScope}`);
+                lines.push(`Total active: ${totalActive + userScope + globalScope}`);
+                return lines.join("\n");
+            }
+            finally {
+                db.close();
+            }
+        },
+    },
+    {
+        name: "tags",
+        description: "List all tags used across memories with their occurrence counts.",
+        params: {
+            limit: "max tags to return (default 30)",
+        },
+        run: async (args) => {
+            const db = GnosysDB.openCentral();
+            try {
+                const all = db.getActiveMemories();
+                const counts = new Map();
+                for (const m of all) {
+                    try {
+                        const tags = JSON.parse(m.tags || "[]");
+                        if (Array.isArray(tags)) {
+                            for (const t of tags)
+                                counts.set(t, (counts.get(t) ?? 0) + 1);
+                        }
+                    }
+                    catch { /* skip malformed */ }
+                }
+                const limit = args.limit ? parseInt(args.limit, 10) : 30;
+                const sorted = [...counts.entries()].sort((a, b) => b[1] - a[1]).slice(0, limit);
+                if (sorted.length === 0)
+                    return "No tags found.";
+                return ["Tags (most common):", ...sorted.map(([t, n]) => `- ${t}: ${n}`)].join("\n");
+            }
+            finally {
+                db.close();
+            }
+        },
+    },
+    {
+        name: "audit",
+        description: "Recent operations from the audit log (writes, reads, dream cycles). Useful for 'what did you do recently?'",
+        params: {
+            days: "look back N days (default 7)",
+            operation: "filter by operation (write, read, recall, dream_complete, etc.)",
+            limit: "max entries (default 20)",
+        },
+        run: async (args) => {
+            const db = GnosysDB.openCentral();
+            try {
+                const days = args.days ? parseInt(args.days, 10) : 7;
+                const cutoff = new Date();
+                cutoff.setDate(cutoff.getDate() - days);
+                const limit = args.limit ? parseInt(args.limit, 10) : 20;
+                const entries = db.queryAuditLog({
+                    sinceIso: cutoff.toISOString(),
+                    operation: args.operation,
+                    limit,
+                });
+                if (entries.length === 0)
+                    return `No audit entries in the last ${days} day(s).`;
+                const lines = [`Recent ${entries.length} audit entr${entries.length === 1 ? "y" : "ies"} (last ${days} days):`];
+                for (const e of entries) {
+                    const memRef = e.memory_id ? ` → ${e.memory_id}` : "";
+                    const dur = e.duration_ms ? ` (${e.duration_ms}ms)` : "";
+                    lines.push(`- ${e.timestamp.slice(0, 19)}  ${e.operation}${memRef}${dur}`);
+                }
+                return lines.join("\n");
+            }
+            finally {
+                db.close();
+            }
+        },
+    },
+    {
+        name: "recent_memories",
+        description: "Memories created or modified recently. Useful for 'what's the latest in project X?'",
+        params: {
+            project_name: "filter to a project name (optional)",
+            project_id: "filter to a project ID (optional)",
+            days: "look back N days (default 7)",
+            limit: "max results (default 20)",
+        },
+        run: async (args) => {
+            const db = GnosysDB.openCentral();
+            try {
+                const days = args.days ? parseInt(args.days, 10) : 7;
+                const limit = args.limit ? parseInt(args.limit, 10) : 20;
+                const cutoff = new Date();
+                cutoff.setDate(cutoff.getDate() - days);
+                const cutoffStr = cutoff.toISOString().slice(0, 10);
+                let pid = args.project_id ?? null;
+                if (!pid && args.project_name) {
+                    const found = db.getAllProjects().find((p) => p.name === args.project_name);
+                    if (found)
+                        pid = found.id;
+                }
+                const all = pid
+                    ? db.getMemoriesByProject(pid)
+                    : db.getActiveMemories();
+                const recent = all
+                    .filter((m) => (m.modified || m.created) >= cutoffStr)
+                    .sort((a, b) => (b.modified || b.created).localeCompare(a.modified || a.created))
+                    .slice(0, limit);
+                if (recent.length === 0) {
+                    return `No memories modified in the last ${days} day(s)${pid ? " for that project" : ""}.`;
+                }
+                const lines = [`Recent ${recent.length} memor${recent.length === 1 ? "y" : "ies"} (last ${days} days):`];
+                for (const m of recent) {
+                    lines.push(`- [${m.id}] ${m.title}  (${m.modified || m.created})`);
+                }
+                return lines.join("\n");
+            }
+            finally {
+                db.close();
+            }
+        },
+    },
+];
+// ─── Public API ────────────────────────────────────────────────────────────
+const TOOL_INDEX = new Map(TOOLS.map((t) => [t.name, t]));
+export function findTool(name) {
+    return TOOL_INDEX.get(name);
+}
+export function listTools() {
+    return [...TOOLS];
+}
+/** System prompt addendum that teaches the LLM the tool-fence syntax. */
+export function buildToolsSystemPrompt() {
+    const lines = [
+        "",
+        "You can call gnosys functions to look up live data the user is asking about. Emit a fenced block:",
+        "",
+        "```gnosys-tool",
+        "tool: <name>",
+        "<param>: <value>",
+        "```",
+        "",
+        "After the fence, STOP. The runtime will execute the tool and inject the result before your next message. Then continue your reply naturally, citing the tool result.",
+        "",
+        "Available tools:",
+    ];
+    for (const t of TOOLS) {
+        const params = Object.keys(t.params).length > 0
+            ? ` (params: ${Object.entries(t.params).map(([k, d]) => `${k} — ${d}`).join("; ")})`
+            : "";
+        lines.push(`- ${t.name}: ${t.description}${params}`);
+    }
+    lines.push("");
+    lines.push("Don't make up data — call a tool when the user asks anything specific about projects, memories, recent activity, tags, or stats.");
+    return lines.join("\n");
+}
+//# sourceMappingURL=tools.js.map

package/dist/lib/chat/tools.js.map

@@ -0,0 +1 @@
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package/dist/lib/db.d.ts

@@ -145,6 +145,23 @@ export declare class GnosysDB {
      * file handles after a WAL checkpoint or remount.
      */
     reopen(): void;
+    /**
+     * Execute a DB operation with automatic recovery from stale-handle errors.
+     *
+     * SQLITE_CORRUPT ("database disk image is malformed") can happen when a
+     * long-lived handle (e.g. an MCP server process) sees stale pages after
+     * concurrent writes from another process (`gnosys setup`, sync layer, etc.)
+     * truncated the WAL or rolled the schema. The DB file itself is fine —
+     * just our cached page view is out of date.
+     *
+     * Strategy: catch the error, close + reopen the handle, retry once. If it
+     * still fails after reopen, rethrow — that's a real corruption case.
+     *
+     * Used internally by write methods that the MCP server calls long-term.
+     * Read methods are also wrapped because reads against stale pages can
+     * surface the same error.
+     */
+    private withRecovery;
     /**
      * Restore from a backup file. Closes current DB, copies backup over, re-opens.
      */
@@ -167,6 +184,25 @@ export declare class GnosysDB {
     getMemory(id: string): DbMemory | null;
     getActiveMemories(): DbMemory[];
     getAllMemories(): DbMemory[];
+    /**
+     * Cheap variant: just id + modified, in one shot. Used by remote sync status
+     * to compute pending push/pull counts without paying for full row hydration
+     * over SMB. Returns rows changed strictly after `sinceIso`.
+     */
+    getIdsModifiedSince(sinceIso: string): Array<{
+        id: string;
+        modified: string;
+    }>;
+    /**
+     * Configure a one-shot SQLite busy_timeout (in milliseconds) on this
+     * connection. Default at open time is 10s; for short-deadline operations
+     * like `gnosys status --remote` we drop it to ~3s so a held write lock on
+     * the NAS fails fast with SQLITE_BUSY instead of hanging the CLI.
+     *
+     * The caller should restore the prior value with `setBusyTimeout(10000)`
+     * once the deadline-bounded operation is done.
+     */
+    setBusyTimeout(ms: number): void;
     getMemoriesByTier(tier: string): DbMemory[];
     getMemoriesByCategory(category: string): DbMemory[];
     getRelationshipsForMemoryIds(ids: string[]): DbRelationship[];
@@ -225,6 +261,7 @@ export declare class GnosysDB {
         title: string;
         relevance: string;
         rank: number;
+        project_id: string | null;
     }>;
     insertRelationship(rel: DbRelationship): void;
     getRelationshipsFrom(id: string): DbRelationship[];
@@ -234,6 +271,27 @@ export declare class GnosysDB {
     getAllSummaries(): DbSummary[];
     logAudit(entry: Omit<DbAuditEntry, "id">): void;
     getAuditLog(memoryId: string, limit?: number): DbAuditEntry[];
+    /**
+     * Get audit entries newer than a given timestamp. Used by remote sync to
+     * push/pull audit_log incrementally. Returns oldest-first so order is
+     * preserved across machines.
+     */
+    getAuditEntriesAfter(sinceIso: string, limit?: number): DbAuditEntry[];
+    /**
+     * Get the most recent audit timestamp seen in this DB. Used as a high-water
+     * mark for sync: "push entries newer than the most recent timestamp the
+     * remote has already seen". Returns null when the table is empty.
+     */
+    getLatestAuditTimestamp(): string | null;
+    /**
+     * Query audit entries with optional filters. Returns newest first.
+     * Used by `gnosys audit` and `gnosys doctor` reports.
+     */
+    queryAuditLog(opts?: {
+        sinceIso?: string;
+        operation?: string;
+        limit?: number;
+    }): DbAuditEntry[];
     updateEmbedding(id: string, embedding: Buffer): void;
     getEmbedding(id: string): Buffer | null;
     getAllEmbeddings(): Array<{

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