gnosys 5.3.3 → 5.4.0

package/dist/cli.js

@@ -11,6 +11,7 @@ import { fileURLToPath } from "url";
 import dotenv from "dotenv";
 import { readFileSync, existsSync, copyFileSync } from "fs";
 import { GnosysResolver } from "./lib/resolver.js";
+import { getGnosysHome } from "./lib/paths.js";
 import { GnosysSearch } from "./lib/search.js";
 import { GnosysTagRegistry } from "./lib/tags.js";
 import { GnosysIngestion } from "./lib/ingest.js";
@@ -469,10 +470,12 @@ program
         }
     }
 });
-// ─── gnosys setup ───────────────────────────────────────────────────────
-program
+// ─── gnosys setup (parent command) ──────────────────────────────────────
+const setupCmd = program
     .command("setup")
-    .description("Interactive setup wizard — configure LLM provider, API key, model, and IDE integration in one step")
+    .description("Configure Gnosys — LLM provider, models, remote sync, and IDE integration");
+// Bare `gnosys setup` runs the full interactive wizard
+setupCmd
     .option("--non-interactive", "Skip prompts, use defaults (for CI/scripting)")
     .action(async (opts) => {
     const { runSetup } = await import("./lib/setup.js");
@@ -481,10 +484,64 @@ program
         nonInteractive: opts.nonInteractive,
     });
 });
+// `gnosys setup models` — just configure LLM provider/model/key
+setupCmd
+    .command("models")
+    .description("Update LLM provider and model configuration")
+    .option("-p, --provider <name>", "Set provider directly (anthropic, openai, xai, groq, mistral, ollama, lmstudio, custom)")
+    .option("-m, --model <name>", "Set model name directly")
+    .option("--no-validate", "Skip the test API call")
+    .action(async (opts) => {
+    const { runModelsSetup } = await import("./lib/setup.js");
+    await runModelsSetup({
+        directory: process.cwd(),
+        provider: opts.provider,
+        model: opts.model,
+        validate: opts.validate,
+    });
+});
+// `gnosys setup remote` — configure remote sync (alias for `gnosys remote configure`)
+setupCmd
+    .command("remote")
+    .description("Configure multi-machine sync (alias for 'gnosys remote configure')")
+    .option("--path <path>", "Set remote path directly (non-interactive)")
+    .action(async (opts) => {
+    const { GnosysDB } = await import("./lib/db.js");
+    const db = GnosysDB.openCentral();
+    if (!db.isAvailable()) {
+        console.error("Central DB not available.");
+        db.close();
+        process.exit(1);
+    }
+    try {
+        if (opts.path) {
+            const { configureFromPath } = await import("./lib/remoteWizard.js");
+            await configureFromPath(db, opts.path);
+        }
+        else {
+            const { runConfigureWizard } = await import("./lib/remoteWizard.js");
+            await runConfigureWizard(db);
+        }
+    }
+    finally {
+        db.close();
+    }
+});
+// ─── gnosys models (top-level shortcut) ─────────────────────────────────
+program
+    .command("models")
+    .description("Quick model operations — list available, refresh cache, or set the default")
+    .option("--list", "List available models for the current provider")
+    .option("--refresh", "Refresh model list from OpenRouter (clears the cache)")
+    .option("--set <model>", "Set the default model for the current provider")
+    .action(async (opts) => {
+    const { runModelsCommand } = await import("./lib/setup.js");
+    await runModelsCommand(opts);
+});
 // ─── gnosys init ─────────────────────────────────────────────────────────
 program
     .command("init [ide]")
-    .description("Initialize Gnosys in the current directory. Optionally specify IDE: cursor, claude, or codex to force IDE setup.")
+    .description("Initialize Gnosys in the current directory. Optionally specify IDE: cursor, claude, claude-desktop, codex, gemini-cli, or antigravity to force IDE setup.")
     .option("-d, --directory <dir>", "Target directory (default: cwd)")
     .option("-n, --name <name>", "Project name (default: directory basename)")
     .action(async (ide, opts) => {
@@ -591,13 +648,15 @@ program
     }
     // If a specific IDE was requested, force-create its config
     if (ide) {
-        const validIdes = ["cursor", "claude", "codex"];
+        const validIdes = ["cursor", "claude", "claude-desktop", "codex", "gemini-cli", "antigravity"];
         const normalizedIde = ide.toLowerCase();
         if (!validIdes.includes(normalizedIde)) {
             console.log(`\nUnknown IDE: "${ide}". Valid options: ${validIdes.join(", ")}`);
         }
         else {
             const { configureCursor, configureClaudeCode, configureCodex } = await import("./lib/projectIdentity.js");
+            // Cursor/Claude/Codex have IDE-specific session hooks. Gemini CLI and
+            // Antigravity don't yet, so we skip the hook step for them.
             let result;
             switch (normalizedIde) {
                 case "cursor":
@@ -615,28 +674,30 @@ program
                 console.log(`  ${result.details}`);
                 console.log(`  File: ${result.filePath}`);
             }
-            // Also set up MCP config for the IDE
+            // Set up MCP config for the IDE
             const { setupIDE } = await import("./lib/setup.js");
             const mcp = await setupIDE(normalizedIde, targetDir);
             if (mcp.success) {
                 console.log(`  MCP: ${mcp.message}`);
             }
-            // Update agentRulesTarget in gnosys.json
-            const identityPath = path.join(storePath, "gnosys.json");
-            try {
-                const identityContent = await fs.readFile(identityPath, "utf-8");
-                const identity = JSON.parse(identityContent);
-                const targetMap = {
-                    cursor: ".cursor/rules/gnosys.mdc",
-                    claude: "CLAUDE.md",
-                    codex: "CODEX.md",
-                };
-                identity.agentRulesTarget = targetMap[normalizedIde] || null;
-                await fs.writeFile(identityPath, JSON.stringify(identity, null, 2) + "\n", "utf-8");
-                console.log(`  Config: agentRulesTarget → ${identity.agentRulesTarget}`);
-            }
-            catch {
-                // Non-critical
+            // Update agentRulesTarget in gnosys.json (only for IDEs with rules files)
+            const targetMap = {
+                cursor: ".cursor/rules/gnosys.mdc",
+                claude: "CLAUDE.md",
+                codex: "CODEX.md",
+            };
+            if (targetMap[normalizedIde]) {
+                const identityPath = path.join(storePath, "gnosys.json");
+                try {
+                    const identityContent = await fs.readFile(identityPath, "utf-8");
+                    const identity = JSON.parse(identityContent);
+                    identity.agentRulesTarget = targetMap[normalizedIde];
+                    await fs.writeFile(identityPath, JSON.stringify(identity, null, 2) + "\n", "utf-8");
+                    console.log(`  Config: agentRulesTarget → ${identity.agentRulesTarget}`);
+                }
+                catch {
+                    // Non-critical
+                }
             }
         }
     }
@@ -3103,7 +3164,7 @@ program
     .action(async (opts) => {
     const projectDir = opts.directory ? path.resolve(opts.directory) : process.cwd();
     const storePath = path.join(projectDir, ".gnosys");
-    const globalStorePath = path.join(os.homedir(), ".gnosys");
+    const globalStorePath = getGnosysHome();
     // Load config: try project-level first, fall back to global ~/.gnosys/
     let cfg;
     let configSource;
@@ -3685,10 +3746,22 @@ program
     console.log(`  Central DB: ${GnosysDB.getCentralDbPath()}`);
 });
 // ─── gnosys projects ────────────────────────────────────────────────────
+/**
+ * Returns true if a project's working directory no longer exists on disk.
+ * Used by `gnosys projects` to filter dead entries by default and by
+ * `gnosys projects --prune` to delete them. We deliberately do NOT pattern-
+ * match on tmp paths — active test fixtures live in /var/folders/ and
+ * /tmp/ and we want them visible while they're in use.
+ */
+function isDeadProjectDir(dir) {
+    return !existsSync(dir);
+}
 program
     .command("projects")
-    .description("List all registered projects in the central DB")
+    .description("List registered projects from the central DB")
     .option("--json", "Output as JSON")
+    .option("--all", "Include dead projects (deleted directories, /tmp/ paths)")
+    .option("--prune", "Delete registry entries whose directory no longer exists or is a tmp path")
     .action(async (opts) => {
     let centralDb = null;
     try {
@@ -3697,18 +3770,71 @@ program
             console.error("Central DB not available (better-sqlite3 missing).");
             process.exit(1);
         }
-        const projects = centralDb.getAllProjects();
-        if (projects.length === 0) {
-            console.log("No projects registered. Run 'gnosys init' in a project directory.");
+        const allProjects = centralDb.getAllProjects();
+        if (opts.prune) {
+            // Find and delete dead projects
+            const deadProjects = allProjects.filter((p) => isDeadProjectDir(p.working_directory));
+            for (const p of deadProjects) {
+                centralDb.deleteProject(p.id);
+            }
+            outputResult(!!opts.json, {
+                deleted: deadProjects.length,
+                remaining: allProjects.length - deadProjects.length,
+                deletedProjects: deadProjects.map((p) => ({ id: p.id, name: p.name, directory: p.working_directory })),
+            }, () => {
+                if (deadProjects.length === 0) {
+                    console.log("No dead projects to prune.");
+                }
+                else {
+                    const DIM = "\x1b[2m";
+                    const RESET = "\x1b[0m";
+                    console.log(`Pruned ${deadProjects.length} dead project(s):\n`);
+                    for (const p of deadProjects) {
+                        console.log(`  ${p.name}  ${DIM}${p.working_directory}${RESET}`);
+                    }
+                    console.log();
+                    console.log(`${allProjects.length - deadProjects.length} project(s) remain.`);
+                }
+            });
+            return;
+        }
+        // Normal listing — filter dead projects by default
+        const visibleProjects = opts.all
+            ? allProjects
+            : allProjects.filter((p) => !isDeadProjectDir(p.working_directory));
+        if (visibleProjects.length === 0) {
+            const deadCount = allProjects.length;
+            outputResult(!!opts.json, {
+                count: 0,
+                totalRegistered: deadCount,
+                deadCount,
+                projects: [],
+            }, () => {
+                if (deadCount === 0) {
+                    console.log("No projects registered. Run 'gnosys init' in a project directory.");
+                }
+                else {
+                    console.log(`No live projects (${deadCount} dead — run 'gnosys projects --all' to see them or 'gnosys projects --prune' to remove them).`);
+                }
+            });
             centralDb.close();
             return;
         }
-        const projectData = projects.map((p) => ({
+        const projectData = visibleProjects.map((p) => ({
             ...p,
             memoryCount: centralDb.getMemoriesByProject(p.id).length,
         }));
-        outputResult(!!opts.json, { count: projects.length, projects: projectData }, () => {
-            console.log(`${projects.length} registered project(s):\n`);
+        const deadCount = allProjects.length - visibleProjects.length;
+        outputResult(!!opts.json, {
+            count: visibleProjects.length,
+            totalRegistered: allProjects.length,
+            deadCount,
+            projects: projectData,
+        }, () => {
+            const header = deadCount > 0 && !opts.all
+                ? `${visibleProjects.length} live project(s) (${deadCount} dead hidden — use --all or --prune):\n`
+                : `${visibleProjects.length} registered project(s):\n`;
+            console.log(header);
             for (const p of projectData) {
                 console.log(`  ${p.name}`);
                 console.log(`    ID:        ${p.id}`);