gnosys 4.4.7 → 5.0.0

package/dist/lib/multimodalIngest.js

@@ -0,0 +1,463 @@
+/**
+ * Gnosys Multimodal Ingestion Orchestrator — Ties together file detection,
+ * extraction, chunking, attachment management, and memory creation.
+ *
+ * Supports PDF and DOCX in Phase 2. Image, audio, and video ingestion
+ * will be added in Phase 3/4.
+ */
+import * as fs from "fs/promises";
+import * as path from "path";
+import { detectFileType } from "./fileDetect.js";
+import { storeAttachment, linkMemoryToAttachment } from "./attachments.js";
+import { extractPdfText } from "./pdfExtract.js";
+import { extractDocxText } from "./docxExtract.js";
+import { extractImageDescription } from "./imageExtract.js";
+import { transcribeAudio } from "./audioExtract.js";
+import { transcribeVideo } from "./videoExtract.js";
+import { splitSegments, splitIntoChunks } from "./chunkSplitter.js";
+import { GnosysIngestion } from "./ingest.js";
+import { GnosysTagRegistry } from "./tags.js";
+import { GnosysStore } from "./store.js";
+import { createProvider } from "./llm.js";
+import { loadConfig, DEFAULT_CONFIG, getProviderModel } from "./config.js";
+// ─── Helpers ────────────────────────────────────────────────────────────
+/**
+ * Build a simple keyword-based relevance string from a chunk of text.
+ * Used in "structured" mode when no LLM is available.
+ */
+function buildRelevance(text, sourceFile) {
+    // Extract the most frequent meaningful words (basic TF approach)
+    const words = text
+        .toLowerCase()
+        .replace(/[^a-z0-9\s-]/g, " ")
+        .split(/\s+/)
+        .filter((w) => w.length > 3);
+    // Count word frequency
+    const freq = new Map();
+    for (const w of words) {
+        freq.set(w, (freq.get(w) || 0) + 1);
+    }
+    // Sort by frequency, take top 20
+    const topWords = [...freq.entries()]
+        .sort((a, b) => b[1] - a[1])
+        .slice(0, 20)
+        .map(([w]) => w);
+    // Add the source filename (without extension) for searchability
+    const baseName = path.basename(sourceFile, path.extname(sourceFile))
+        .replace(/[^a-zA-Z0-9]+/g, " ")
+        .trim();
+    return [...new Set([baseName, ...topWords])].join(" ");
+}
+/**
+ * Generate a title from a chunk of text.
+ * Takes the first line or first ~60 chars as the title.
+ */
+function generateTitle(text, chunkIndex, sourceFile, page) {
+    const baseName = path.basename(sourceFile, path.extname(sourceFile));
+    // Try to use the first line if it looks like a heading
+    const firstLine = text.split("\n")[0].replace(/^#+\s*/, "").trim();
+    if (firstLine && firstLine.length > 5 && firstLine.length < 120) {
+        return firstLine;
+    }
+    // Fall back to a descriptive title
+    const pageLabel = page ? ` p${page}` : "";
+    return `${baseName}${pageLabel} — chunk ${chunkIndex + 1}`;
+}
+// ─── Audio / Video helpers ───────────────────────────────────────────────
+/**
+ * Format seconds as "HH:MM:SS" for display in source_timerange.
+ */
+function formatTime(seconds) {
+    const h = Math.floor(seconds / 3600);
+    const m = Math.floor((seconds % 3600) / 60);
+    const s = Math.floor(seconds % 60);
+    return `${h.toString().padStart(2, "0")}:${m.toString().padStart(2, "0")}:${s.toString().padStart(2, "0")}`;
+}
+/**
+ * Build transcription options from the Gnosys config.
+ */
+function buildTranscriptionOptions(config) {
+    return {
+        provider: config.multimodal?.transcriptionProvider,
+        model: config.multimodal?.whisperModel,
+    };
+}
+/**
+ * Group transcript segments into ~2-minute time windows and convert
+ * them into TextChunks with timerange metadata.
+ *
+ * Each chunk gets a sourceTimerange like "00:01:23-00:03:15" so the
+ * resulting memory can reference back to the original audio/video.
+ */
+function buildTranscriptChunks(segments, targetSize) {
+    if (segments.length === 0)
+        return [];
+    const TARGET_WINDOW_SECONDS = 120; // ~2-minute windows
+    // Group segments into time windows
+    const windows = [];
+    let currentWindow = null;
+    for (const seg of segments) {
+        if (!seg.text.trim())
+            continue;
+        if (!currentWindow ||
+            seg.startTime - currentWindow.startTime >= TARGET_WINDOW_SECONDS) {
+            // Start a new window
+            if (currentWindow)
+                windows.push(currentWindow);
+            currentWindow = {
+                texts: [seg.text.trim()],
+                startTime: seg.startTime,
+                endTime: seg.endTime,
+            };
+        }
+        else {
+            // Add to the current window
+            currentWindow.texts.push(seg.text.trim());
+            currentWindow.endTime = seg.endTime;
+        }
+    }
+    if (currentWindow)
+        windows.push(currentWindow);
+    // Convert time windows into segments for splitSegments
+    const timedSegments = windows.map((w) => ({
+        text: w.texts.join(" "),
+        timerange: `${formatTime(w.startTime)}-${formatTime(w.endTime)}`,
+    }));
+    return splitSegments(timedSegments, { targetSize });
+}
+// ─── Public API ─────────────────────────────────────────────────────────
+/**
+ * Ingest a file into Gnosys memory.
+ *
+ * Steps:
+ * 1. Detect file type (PDF, DOCX, text, etc.)
+ * 2. Validate file size
+ * 3. Copy file to .gnosys/attachments/
+ * 4. Extract text based on file type
+ * 5. Split text into memory-sized chunks
+ * 6. Create a memory for each chunk (via LLM or structured mode)
+ * 7. Link each memory back to the attachment
+ */
+export async function ingestFile(options) {
+    const startTime = Date.now();
+    const { filePath, storePath, mode = "llm", author = "human", authority = "imported", dryRun = false, projectRoot, onProgress, } = options;
+    // Step 1: Detect file type
+    const fileInfo = await detectFileType(filePath);
+    // Reject unsupported types early
+    if (fileInfo.type === "unknown") {
+        throw new Error(`Unsupported file type: ${path.extname(filePath) || "unknown"}. ` +
+            `Supported: PDF, DOCX, TXT, MD, PNG, JPG, GIF, WEBP, MP3, WAV, M4A, MP4, MKV, MOV.`);
+    }
+    // Step 2: Validate file size
+    let config = DEFAULT_CONFIG;
+    try {
+        config = await loadConfig(storePath);
+    }
+    catch {
+        // Use defaults
+    }
+    const stat = await fs.stat(filePath);
+    const fileSizeMb = stat.size / (1024 * 1024);
+    const maxSizeMb = config.multimodal?.maxFileSizeMb ?? 100;
+    if (fileSizeMb > maxSizeMb) {
+        throw new Error(`File is ${fileSizeMb.toFixed(1)}MB, which exceeds the ${maxSizeMb}MB limit. ` +
+            `Adjust multimodal.maxFileSizeMb in gnosys.json to increase.`);
+    }
+    // Step 3: Store as attachment (skip in dry run)
+    let attachment;
+    if (dryRun) {
+        attachment = {
+            uuid: "dry-run-uuid",
+            originalName: path.basename(filePath),
+            extension: fileInfo.extension,
+            mimeType: fileInfo.mimeType,
+            sizeBytes: stat.size,
+            contentHash: "dry-run-hash",
+            createdAt: new Date().toISOString(),
+            memoryIds: [],
+        };
+    }
+    else {
+        attachment = await storeAttachment(storePath, filePath);
+    }
+    // Step 4: Extract text based on file type
+    let chunks;
+    const chunkSize = config.multimodal?.chunkSize ?? 1500;
+    const sourceFileName = path.basename(filePath);
+    switch (fileInfo.type) {
+        case "pdf": {
+            const pdfChunks = await extractPdfText(filePath);
+            // Convert PDF sections into segments — pages tracked as metadata
+            const segments = pdfChunks.map((pc) => ({
+                text: pc.text,
+                page: pc.pages,
+            }));
+            chunks = splitSegments(segments, { targetSize: chunkSize });
+            break;
+        }
+        case "docx": {
+            const docxChunks = await extractDocxText(filePath);
+            // Each DOCX section becomes a segment (no page numbers for DOCX)
+            const segments = docxChunks.map((dc) => ({
+                text: dc.text,
+                page: dc.sectionHeading,
+            }));
+            chunks = splitSegments(segments, { targetSize: chunkSize });
+            break;
+        }
+        case "text": {
+            // Plain text / markdown — read raw and split into chunks
+            const rawText = await fs.readFile(filePath, "utf-8");
+            chunks = splitIntoChunks(rawText, { targetSize: chunkSize });
+            break;
+        }
+        case "image": {
+            // Image ingestion: use a vision LLM to describe the image,
+            // then create a single memory from the description.
+            // This is a separate path — images produce one memory, not chunks.
+            return await ingestImage(filePath, storePath, config, attachment, {
+                author,
+                authority,
+                dryRun,
+                mode,
+                onProgress,
+                startTime,
+                sourceFileName,
+            });
+        }
+        case "audio": {
+            // Audio ingestion: transcribe with Whisper, then chunk by time windows
+            const audioOptions = buildTranscriptionOptions(config);
+            const transcript = await transcribeAudio(filePath, audioOptions);
+            chunks = buildTranscriptChunks(transcript.segments, chunkSize);
+            break;
+        }
+        case "video": {
+            // Video ingestion: extract audio via ffmpeg, transcribe, then chunk
+            const videoOptions = buildTranscriptionOptions(config);
+            const videoTranscript = await transcribeVideo(filePath, videoOptions);
+            chunks = buildTranscriptChunks(videoTranscript.segments, chunkSize);
+            break;
+        }
+        default:
+            throw new Error(`File type "${fileInfo.type}" is not yet supported for text extraction.`);
+    }
+    if (chunks.length === 0) {
+        return {
+            attachment,
+            memories: [],
+            errors: [{ chunk: 0, error: "No text content could be extracted from the file." }],
+            duration: Date.now() - startTime,
+            fileType: fileInfo.type,
+        };
+    }
+    // Step 5: Initialize the store and ingestion pipeline
+    const gnosysStore = new GnosysStore(storePath);
+    const tagRegistry = new GnosysTagRegistry(storePath);
+    await tagRegistry.load();
+    const ingestion = new GnosysIngestion(gnosysStore, tagRegistry, config);
+    const today = new Date().toISOString().split("T")[0];
+    const memories = [];
+    const errors = [];
+    // Step 6: Process each chunk into a memory
+    for (let i = 0; i < chunks.length; i++) {
+        const chunk = chunks[i];
+        if (onProgress) {
+            onProgress({
+                current: i + 1,
+                total: chunks.length,
+                title: `Processing chunk ${i + 1}/${chunks.length}`,
+            });
+        }
+        try {
+            let title;
+            let category;
+            let tags;
+            let relevance;
+            let content;
+            let confidence;
+            let filename;
+            if (mode === "llm" && ingestion.isLLMAvailable) {
+                // LLM-powered structuring
+                const result = await ingestion.ingest(chunk.text);
+                title = result.title;
+                category = result.category;
+                tags = result.tags;
+                relevance = result.relevance;
+                content = result.content;
+                confidence = result.confidence;
+                filename = result.filename;
+            }
+            else {
+                // Structured mode — no LLM needed
+                title = generateTitle(chunk.text, i, sourceFileName, chunk.sourcePage);
+                category = "imported";
+                tags = { type: ["imported"], source: ["document"] };
+                relevance = buildRelevance(chunk.text, sourceFileName);
+                content = chunk.text;
+                confidence = 0.7;
+                filename = title
+                    .toLowerCase()
+                    .replace(/[^a-z0-9]+/g, "-")
+                    .replace(/^-|-$/g, "")
+                    .substring(0, 60);
+            }
+            if (dryRun) {
+                memories.push({
+                    id: `dry-run-${i}`,
+                    title,
+                    path: `${category}/${filename}.md`,
+                    page: chunk.sourcePage,
+                    timerange: chunk.sourceTimerange,
+                });
+                continue;
+            }
+            // Generate a unique ID and write the memory
+            const id = await gnosysStore.generateId(category);
+            const frontmatter = {
+                id,
+                title,
+                category,
+                tags,
+                relevance,
+                author: author,
+                authority: authority,
+                confidence,
+                created: today,
+                modified: today,
+                last_reviewed: today,
+                status: "active",
+                supersedes: null,
+                // v5.0: Source tracking
+                source_file: sourceFileName,
+                source_page: chunk.sourcePage || null,
+                source_timerange: chunk.sourceTimerange || null,
+            };
+            const memoryContent = `# ${title}\n\n${content}`;
+            const relPath = await gnosysStore.writeMemory(category, `${filename}.md`, frontmatter, memoryContent);
+            // Link the memory to its attachment
+            await linkMemoryToAttachment(storePath, attachment.uuid, id);
+            memories.push({
+                id,
+                title,
+                path: relPath,
+                page: chunk.sourcePage,
+                timerange: chunk.sourceTimerange,
+            });
+        }
+        catch (err) {
+            errors.push({
+                chunk: i,
+                error: err instanceof Error ? err.message : String(err),
+            });
+        }
+    }
+    return {
+        attachment,
+        memories,
+        errors,
+        duration: Date.now() - startTime,
+        fileType: fileInfo.type,
+    };
+}
+// ─── Image Ingestion ────────────────────────────────────────────────────
+/**
+ * Ingest an image file into a single memory using a vision LLM.
+ * Resolves the vision provider from config: multimodal.visionProvider
+ * falls back to llm.defaultProvider. Similarly for the model.
+ */
+async function ingestImage(filePath, storePath, config, attachment, opts) {
+    const { author, authority, dryRun, onProgress, startTime, sourceFileName } = opts;
+    if (onProgress) {
+        onProgress({ current: 1, total: 1, title: "Analyzing image with vision LLM" });
+    }
+    // Resolve vision provider: config.multimodal.visionProvider > config.llm.defaultProvider
+    const visionProviderName = config.multimodal?.visionProvider || config.llm.defaultProvider;
+    const visionModel = config.multimodal?.visionModel || getProviderModel(config, visionProviderName);
+    const provider = createProvider(visionProviderName, visionModel, config);
+    // Extract description from the image
+    const imageDesc = await extractImageDescription(filePath, provider);
+    if (!imageDesc.text || imageDesc.text.trim().length === 0) {
+        return {
+            attachment,
+            memories: [],
+            errors: [{ chunk: 0, error: "Vision LLM returned an empty description for the image." }],
+            duration: Date.now() - startTime,
+            fileType: "image",
+        };
+    }
+    // Build the memory
+    const baseName = path.basename(filePath, path.extname(filePath));
+    const title = imageDesc.description
+        ? (imageDesc.description.length > 100
+            ? imageDesc.description.slice(0, 97) + "..."
+            : imageDesc.description)
+        : `Image: ${baseName}`;
+    const category = "imported";
+    const tags = {
+        type: ["imported", "image"],
+        source: ["image"],
+        ...(imageDesc.topics.length > 0 ? { topic: imageDesc.topics.slice(0, 5) } : {}),
+    };
+    const relevance = [
+        baseName.replace(/[^a-zA-Z0-9]+/g, " ").trim(),
+        ...imageDesc.topics,
+    ]
+        .filter(Boolean)
+        .join(" ");
+    const confidence = 0.7;
+    const filename = baseName
+        .toLowerCase()
+        .replace(/[^a-z0-9]+/g, "-")
+        .replace(/^-|-$/g, "")
+        .substring(0, 60);
+    if (dryRun) {
+        return {
+            attachment,
+            memories: [
+                {
+                    id: "dry-run-0",
+                    title,
+                    path: `${category}/${filename}.md`,
+                },
+            ],
+            errors: [],
+            duration: Date.now() - startTime,
+            fileType: "image",
+        };
+    }
+    // Write the memory
+    const gnosysStore = new GnosysStore(storePath);
+    const today = new Date().toISOString().split("T")[0];
+    const id = await gnosysStore.generateId(category);
+    const frontmatter = {
+        id,
+        title,
+        category,
+        tags,
+        relevance,
+        author,
+        authority,
+        confidence,
+        created: today,
+        modified: today,
+        last_reviewed: today,
+        status: "active",
+        supersedes: null,
+        source_file: sourceFileName,
+        source_page: null,
+        source_timerange: null,
+    };
+    const memoryContent = `# ${title}\n\n${imageDesc.text}`;
+    const relPath = await gnosysStore.writeMemory(category, `${filename}.md`, frontmatter, memoryContent);
+    // Link the memory to its attachment
+    await linkMemoryToAttachment(storePath, attachment.uuid, id);
+    return {
+        attachment,
+        memories: [{ id, title, path: relPath }],
+        errors: [],
+        duration: Date.now() - startTime,
+        fileType: "image",
+    };
+}
+//# sourceMappingURL=multimodalIngest.js.map

package/dist/lib/multimodalIngest.js.map

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package/dist/lib/pdfExtract.d.ts

@@ -0,0 +1,29 @@
+/**
+ * Gnosys PDF Extraction — Extract text from PDF files by section.
+ *
+ * Splits on content structure (headings, topic boundaries) rather than page
+ * breaks. Page numbers are tracked as metadata so memories know which pages
+ * they came from. This mirrors DOCX extraction behavior.
+ *
+ * Uses pdf-parse v2 (class-based API wrapping Mozilla's pdf.js) via dynamic
+ * import so it stays optional and doesn't break builds that don't need it.
+ */
+export interface PdfChunk {
+    /** Extracted text content for this section */
+    text: string;
+    /** Section heading if detected */
+    sectionHeading?: string;
+    /** Page range where this section appears, e.g. "3" or "3-5" */
+    pages: string;
+    /** Total number of pages in the PDF */
+    pageCount: number;
+}
+/**
+ * Extract text from a PDF file, splitting by sections/topics.
+ *
+ * First extracts all text with page tracking, then splits on detected
+ * headings or structural boundaries. Each chunk includes the page range
+ * where the content appears.
+ */
+export declare function extractPdfText(filePath: string): Promise<PdfChunk[]>;
+//# sourceMappingURL=pdfExtract.d.ts.map

package/dist/lib/pdfExtract.d.ts.map

@@ -0,0 +1 @@
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