gitnexus 1.6.9 → 1.6.10-aptos.0

package/README.md

@@ -2,7 +2,7 @@
 
 **Graph-powered code intelligence for AI agents.** Index any codebase into a knowledge graph, then query it via MCP or CLI.
 
-Works with **Cursor**, **Claude Code**, **Antigravity** (Google), **Codex**, **Windsurf**, **Cline**, **OpenCode**, and any MCP-compatible tool.
+Works with **Cursor**, **Claude Code**, **Antigravity** (Google), **Codex**, **Windsurf**, **Cline**, **OpenCode**, **CodeBuddy** (Tencent), **Qoder** (Alibaba), and any MCP-compatible tool.
 
 [![npm version](https://img.shields.io/npm/v/gitnexus.svg)](https://www.npmjs.com/package/gitnexus)
 [![License: PolyForm Noncommercial](https://img.shields.io/badge/License-PolyForm%20Noncommercial-blue.svg)](https://polyformproject.org/licenses/noncommercial/1.0.0/)
@@ -43,11 +43,13 @@ To configure MCP for your editor, run `npx gitnexus setup` once — or set it up
 | **Claude Code**          | Yes | Yes    | Yes (PreToolUse + PostToolUse)                                                             | **Full**     |
 | **Cursor**               | Yes | Yes    | Yes (postToolUse, [manual install](../gitnexus-cursor-integration/README.md#hook-install)) | **Full**     |
 | **Antigravity** (Google) | Yes | Yes    | Yes (AfterTool, [Gemini CLI hooks schema](https://geminicli.com/docs/hooks/reference/))    | **Full**     |
-| **Codex**                | Yes | Yes    | —                                                                                          | MCP + Skills |
+| **Codex**                | Yes | Yes    | Yes (PreToolUse + PostToolUse, [Codex hooks](https://developers.openai.com/codex/hooks))   | **Full**     |
 | **OpenCode**             | Yes | Yes    | —                                                                                          | MCP + Skills |
+| **CodeBuddy** (Tencent)  | Yes | Yes    | —                                                                                          | MCP + Skills |
+| **Qoder** (Alibaba)      | Yes | Yes    | —                                                                                          | MCP + Skills |
 | **Windsurf**             | Yes | —      | —                                                                                          | MCP          |
 
-> **Claude Code** gets the deepest integration: MCP tools + agent skills + PreToolUse hooks that automatically enrich grep/glob/bash calls with knowledge graph context + PostToolUse hooks that detect a stale index after commits and prompt the agent to reindex.
+> **Claude Code** and **Codex** get the deepest integration: MCP tools + agent skills + PreToolUse hooks that automatically enrich grep/glob/bash calls with knowledge graph context + PostToolUse hooks that detect a stale index after commits and prompt the agent to reindex.
 
 ### Community Integrations
 
@@ -69,12 +71,23 @@ claude mcp add gitnexus -- npx -y gitnexus@latest mcp
 claude mcp add gitnexus -- cmd /c npx -y gitnexus@latest mcp
 ```
 
-### Codex (full support — MCP + skills)
+### Codex (full support — MCP + skills + hooks)
 
 ```bash
 codex mcp add gitnexus -- npx -y gitnexus@latest mcp
 ```
 
+Codex hooks (PreToolUse graph enrichment + PostToolUse stale-index detection in `~/.codex/hooks.json`, [same schema as Claude Code](https://developers.openai.com/codex/hooks)) need the bundled adapter script, so they are installed by `gitnexus setup -c codex` rather than manually.
+
+Alternatively, install everything as a [Codex plugin](https://developers.openai.com/codex/plugins/build) (MCP + skills + hooks in one step):
+
+```bash
+codex plugin marketplace add abhigyanpatwari/GitNexus
+# then inside Codex: /plugins → install "GitNexus"
+```
+
+> **Codex notes:** SessionStart is intentionally not registered — Codex reads [AGENTS.md natively](https://developers.openai.com/codex/guides/agents-md), which already carries the GitNexus context block. Newly installed hooks need a one-time approval in Codex via `/hooks` before they run. Pick **one** install route (`gitnexus setup -c codex` **or** the plugin): plugin hooks load alongside `~/.codex/hooks.json`, so installing both can fire duplicate hooks per tool call.
+
 ### Cursor / Windsurf
 
 Add to `~/.cursor/mcp.json` (global — works for all projects):
@@ -105,6 +118,36 @@ Add to `~/.config/opencode/config.json`:
 }
 ```
 
+### CodeBuddy
+
+CodeBuddy reads only the **first existing file** in its config priority chain: `~/.codebuddy/.mcp.json` (recommended) → `~/.codebuddy/mcp.json` (deprecated) → `~/.codebuddy.json` (legacy). Edit the first non-empty file that exists — creating a higher-priority file would hide the servers in the ones below it. If none exist, create `~/.codebuddy/.mcp.json`:
+
+```json
+{
+  "mcpServers": {
+    "gitnexus": {
+      "command": "npx",
+      "args": ["-y", "gitnexus@latest", "mcp"]
+    }
+  }
+}
+```
+
+### Qoder
+
+Add to `~/.qoder.json`:
+
+```json
+{
+  "mcpServers": {
+    "gitnexus": {
+      "command": "npx",
+      "args": ["-y", "gitnexus@latest", "mcp"]
+    }
+  }
+}
+```
+
 ## How It Works
 
 GitNexus builds a complete knowledge graph of your codebase through a multi-phase indexing pipeline:
@@ -120,29 +163,39 @@ GitNexus builds a complete knowledge graph of your codebase through a multi-phas
 
 The result is a **LadybugDB graph database** stored locally in `.gitnexus/` with full-text search and semantic embeddings.
 
+### Experimental community detection engine
+
+Community detection uses the bundled Graphology Leiden implementation by default. To test the #2337 Icebug migration path without changing default analyze behavior, set:
+
+```bash
+GITNEXUS_COMMUNITY_ENGINE=icebug npx gitnexus analyze
+```
+
+Supported values are `graphology`, `icebug`, and `auto`. The Icebug path is an experimental probe: GitNexus does not bundle an Icebug native package yet, and if a separately resolvable module is unavailable or its API does not match the expected `Graph.fromCSR` / `ParallelLeidenView` shape, analyze falls back to Graphology and reports the fallback in progress output. Today `auto` is behaviorally identical to `icebug`: both try Icebug and fall back to Graphology, while `graphology` skips the Icebug probe entirely.
+
 ## MCP Tools
 
 Your AI agent gets **17 tools** (15 per-repo + 2 group) automatically:
 
 | Tool             | What It Does                                                           |
-| ---------------- | ----------------------------------------------------------------------- |
-| `list_repos`     | Discover all indexed repositories (paginated — `limit`/`offset`)        |
-| `query`          | Process-grouped hybrid search (BM25 + semantic + RRF)                   |
-| `context`        | 360-degree symbol view — categorized refs, process participation        |
-| `impact`         | Blast radius analysis with depth grouping and confidence                |
-| `trace`          | Shortest directed path between two symbols (call + class-member edges)  |
-| `detect_changes` | Git-diff impact — maps changed lines to affected processes              |
-| `check`          | Read-only structural checks against the indexed graph                   |
-| `rename`         | Multi-file coordinated rename with graph + text search                  |
-| `cypher`         | Raw Cypher graph queries                                                |
-| `route_map`      | API route map — which components fetch which endpoints, and handlers    |
-| `tool_map`       | MCP/RPC tool definitions — where they're defined and handled            |
-| `shape_check`    | Validate API response shapes against consumers' property accesses       |
-| `api_impact`     | Pre-change impact report for an API route handler                       |
-| `explain`        | Explain persisted taint findings (source→sink flows, `--pdg` indexes)   |
-| `pdg_query`      | Query control/data dependence at statement level (`--pdg` indexes)      |
-| `group_list`     | List configured repository groups                                       |
-| `group_sync`     | Rebuild a group's Contract Registry and cross-repo links                |
+| ---------------- | ---------------------------------------------------------------------- |
+| `list_repos`     | Discover all indexed repositories (paginated — `limit`/`offset`)       |
+| `query`          | Process-grouped hybrid search (BM25 + semantic + RRF)                  |
+| `context`        | 360-degree symbol view — categorized refs, process participation       |
+| `impact`         | Blast radius analysis with depth grouping and confidence               |
+| `trace`          | Shortest directed path between two symbols (call + class-member edges) |
+| `detect_changes` | Git-diff impact — maps changed lines to affected processes             |
+| `check`          | Read-only structural checks against the indexed graph                  |
+| `rename`         | Multi-file coordinated rename with graph + text search                 |
+| `cypher`         | Raw Cypher graph queries                                               |
+| `route_map`      | API route map — which components fetch which endpoints, and handlers   |
+| `tool_map`       | MCP/RPC tool definitions — where they're defined and handled           |
+| `shape_check`    | Validate API response shapes against consumers' property accesses      |
+| `api_impact`     | Pre-change impact report for an API route handler                      |
+| `explain`        | Explain persisted taint findings (source→sink flows, `--pdg` indexes)  |
+| `pdg_query`      | Query control/data dependence at statement level (`--pdg` indexes)     |
+| `group_list`     | List configured repository groups                                      |
+| `group_sync`     | Rebuild a group's Contract Registry and cross-repo links               |
 
 > With one indexed repo, the `repo` param is optional. With multiple, specify which: `query({search_query: "auth", repo: "my-app"})`. Per-repo tools also take an optional `branch` for indexes pinned with `gitnexus analyze --branch`; omitting it queries the workspace index, which follows your checked-out working tree. `explain` and `pdg_query` need an index built with `gitnexus analyze --pdg`.
 
@@ -177,9 +230,10 @@ gitnexus analyze [path]          # Index a repository (or update stale index)
 gitnexus analyze --repair-fts    # Fast path: rebuild/verify only FTS indexes on existing index data
 gitnexus analyze --force         # Full rebuild: re-parse + graph rebuild + FTS rebuild
 gitnexus analyze --embeddings    # Enable embedding generation (slower, better search)
+gitnexus embeddings install      # Fetch the optional local embedding stack on demand (--cuda, --force)
 gitnexus analyze --skills        # Generate repo-specific skill files from detected communities
 gitnexus analyze --skip-agents-md  # Preserve custom AGENTS.md/CLAUDE.md gitnexus section edits
-gitnexus analyze --skip-skills   # Skip installing .claude/skills/gitnexus/ skill files
+gitnexus analyze --skip-skills   # Skip installing standard .claude/skills/gitnexus-* skill files
 gitnexus analyze --skip-git      # Index folders that are not Git repositories
 gitnexus analyze --workers <n>   # Parse worker pool size (>=1; default: cores-1, capped at 16)
 gitnexus analyze --verbose       # Log skipped files when parsers are unavailable
@@ -195,6 +249,8 @@ gitnexus clean                   # Delete index for current repo
 gitnexus clean --all --force     # Delete all indexes
 gitnexus wiki [path]             # Generate LLM-powered docs from knowledge graph
 gitnexus wiki --model <model>    # Wiki with custom LLM model (default: minimax/minimax-m2.5)
+gitnexus wiki --base-url http://llama-box.local:8080/v1 --allow-insecure-connection llama-box.local
+                                  # Allow an exact LAN/self-hosted HTTP LLM host; env: GITNEXUS_ALLOW_INSECURE_CONNECTION
 gitnexus doctor                  # Show runtime platform capabilities and embedding configuration
 
 # Direct graph queries — the same tools the MCP server exposes, no MCP daemon needed
@@ -228,11 +284,24 @@ Set these env vars to use a remote OpenAI-compatible `/v1/embeddings` endpoint i
 export GITNEXUS_EMBEDDING_URL=http://your-server:8080/v1
 export GITNEXUS_EMBEDDING_MODEL=BAAI/bge-large-en-v1.5
 export GITNEXUS_EMBEDDING_DIMS=1024          # optional, default 384
+export GITNEXUS_EMBEDDING_REQUEST_DIMS=omit  # optional: omit "dimensions", or an integer to override it
 export GITNEXUS_EMBEDDING_API_KEY=your-key   # optional, default: "unused"
+export GITNEXUS_EMBEDDING_MAX_ATTEMPTS=3     # optional, total attempts (1-20)
+export GITNEXUS_EMBEDDING_RETRY_CAP_MS=5000  # optional, maximum retry delay
+export GITNEXUS_EMBEDDING_MIN_INTERVAL_MS=0  # optional, minimum request spacing
 gitnexus analyze . --embeddings
 ```
 
-Works with Infinity, vLLM, TEI, llama.cpp, Ollama, LM Studio, or OpenAI. When unset, local embeddings are used unchanged.
+`GITNEXUS_EMBEDDING_REQUEST_DIMS` controls only the `dimensions` field sent in
+the request body, independently of `GITNEXUS_EMBEDDING_DIMS` (which still
+validates the returned vector's length):
+
+- `omit` (or `none`, `off`, `false`, `0`) — do not send `dimensions` at all, for
+  strict backends that return the right vector size but reject the field.
+- a positive integer — send that value instead of `GITNEXUS_EMBEDDING_DIMS`.
+- unset — send `GITNEXUS_EMBEDDING_DIMS` (the previous behavior).
+
+Works with Infinity, vLLM, TEI, llama.cpp, Ollama, LM Studio, or OpenAI. Retry and pacing settings are provider-neutral; provider-specific limits should be supplied through configuration. When unset, local embeddings are used unchanged.
 
 ## Multi-Repo Support
 
@@ -242,6 +311,8 @@ GitNexus supports indexing multiple repositories. Each `gitnexus analyze` regist
 
 TypeScript, JavaScript, Python, Java, C, C++, C#, Go, Rust, PHP, Kotlin, Swift, Ruby, Dart
 
+**Move (Aptos)** is supported on the `aptos` release channel (`npm i -g gitnexus@aptos`) via compiler-first ingestion: the first analyze of a repo containing `Move.toml` provisions the pinned MoveFlow compiler automatically — see [Aptos / Move builds](#aptos--move-builds-aptos-dist-tag) and [Move compiler provisioning](#move-compiler-provisioning).
+
 ### Language Feature Matrix
 
 | Language   | Imports | Named Bindings | Exports | Heritage | Type Annotations | Constructor Inference | Config | Frameworks | Entry Points |
@@ -273,14 +344,37 @@ GitNexus ships with skill files that teach AI agents how to use the tools effect
 - **Refactoring** — Plan safe refactors using dependency mapping
 - **Guide** — GitNexus tool/resource/schema reference for the agent
 - **CLI** — Run analyze/status/clean/wiki commands on request
+- **PDG Query** — Statement-level control/data dependence queries (`--pdg` index)
+- **Taint Analysis** — Source→sink data-flow findings (`--pdg` index)
+- **Plan / Work / Review / LFG** — The engineering family: implementation-ready plans, gated plan execution, graph-backed change review with taint + expert lenses, and the end-to-end pipeline
 
-Installed automatically by both `gitnexus analyze` (per-repo) and `gitnexus setup` (global). Run `gitnexus analyze --skills` to additionally generate repo-specific skills for each detected functional area under `.claude/skills/generated/`.
+Installed automatically by both `gitnexus analyze` (per-repo) and `gitnexus setup` (global). Run `gitnexus analyze --skills` to additionally generate each detected functional area as a direct project skill under `.claude/skills/gitnexus-area-<name>/`.
 
 ## Requirements
 
 - Node.js >= 22
 - Git repository (uses git for commit tracking)
 
+## Aptos / Move builds (`aptos` dist-tag)
+
+Move (Aptos) support ships from the `main-aptos` branch under the dedicated
+`aptos` dist-tag — the default `latest` channel does not include it yet.
+
+```bash
+# Install the Aptos-enabled build
+npm install -g gitnexus@aptos
+# — or run it directly —
+npx gitnexus@aptos analyze
+```
+
+Aptos builds version as `X.Y.Z-aptos.N` (e.g. `1.6.10-aptos.0`) and track the
+stable channel via periodic `main → main-aptos` syncs. Everything else in this
+README applies unchanged; the Move-specific pieces are the compiler-first
+ingestion of `Move.toml` packages and the analyze-time MoveFlow provisioning
+described in [Move compiler provisioning](#move-compiler-provisioning) —
+including the `MOVE_FLOW` override and `GITNEXUS_SKIP_MOVE_FLOW=1` for
+air-gapped hosts.
+
 ## Release candidates
 
 Stable releases publish to the default `latest` dist-tag. When a pull request
@@ -364,7 +458,7 @@ gitnexus serve
 
 ### Installation fails with native module errors
 
-Some optional language grammars (Dart, Proto, Swift, Kotlin) require native compilation. If they fail, GitNexus still works — those languages will be skipped. To skip them intentionally (no C++ toolchain needed), set `GITNEXUS_SKIP_OPTIONAL_GRAMMARS=1` before installing.
+Some optional language grammars (Dart, Proto, Swift, Kotlin) require native compilation. If they fail, GitNexus still works — those languages will be skipped. To skip them intentionally (no C++ toolchain needed), set `GITNEXUS_SKIP_OPTIONAL_GRAMMARS=1` before installing. Strict `=1` also disables automatic `move-flow` downloads during analysis; a verified cache entry, explicit `MOVE_FLOW`, or compatible binary on `PATH` remains usable.
 
 If `npm install -g gitnexus` fails on native modules:
 
@@ -377,19 +471,61 @@ If `npm install -g gitnexus` fails on native modules:
 npm install -g gitnexus
 ```
 
+### Move compiler provisioning
+
+When a repository contains `Move.toml`, `gitnexus analyze` resolves `move-flow`
+from the authoritative `MOVE_FLOW` path, a verified cache under
+`~/.gitnexus/tools/move-flow`, `PATH`, or the pinned GitHub release. Managed
+downloads use HTTPS, checksum and version verification, a cross-process lock,
+and atomic publication.
+
+For air-gapped hosts, set `MOVE_FLOW` to a preinstalled compatible binary or
+pre-seed the managed cache. Set `GITNEXUS_SKIP_MOVE_FLOW=1` to disable automatic
+downloads. The cache root and network/compiler timeouts can be configured with
+`GITNEXUS_MOVE_FLOW_DIR`, `GITNEXUS_MOVE_FLOW_HTTP_TIMEOUT_MS`, and
+`GITNEXUS_MOVE_FLOW_TIMEOUT_MS`.
+
+GitNexus records the compiler identity that produced Move facts. A compiler
+change forces a full rebuild; if an existing compiler-backed graph needs an
+update while `move-flow` is unavailable, analysis fails before mutating it.
+
+### Installation fails behind an HTTP proxy (`onnxruntime-node` postinstall)
+
+`onnxruntime-node`'s postinstall downloads optional CUDA GPU binaries from `api.nuget.org` — outside the npm registry, so registry mirrors don't cover it, and its proxy layer (`global-agent`) ignores the standard `HTTP_PROXY`/`HTTPS_PROXY` variables and rejects 302 redirects ([#2370](https://github.com/abhigyanpatwari/GitNexus/issues/2370)).
+
+Since the packages are optional dependencies, a failed download no longer breaks `npm install -g gitnexus` — npm skips the embedding stack and everything else works. The stack then **self-heals on demand**: the first `gitnexus analyze --embeddings` (or an explicit `gitnexus embeddings install`) fetches it through your configured npm registry — mirrors and proxies apply, no NuGet download involved — into `~/.gitnexus/embedding-runtime`.
+
+```bash
+# heal a proxy-degraded install manually (CPU embeddings; registry-only)
+gitnexus embeddings install
+
+# reinstall into the prefix even when the stack already resolves
+gitnexus embeddings install --force
+
+# CUDA GPU hosts: also fetch GPU binaries (NuGet; set the proxy global-agent reads)
+GLOBAL_AGENT_HTTPS_PROXY=<proxy-url> gitnexus embeddings install --cuda
+```
+
+The prefix defaults to `~/.gitnexus/embedding-runtime`; set `GITNEXUS_EMBEDDING_RUNTIME_DIR` to install it elsewhere (e.g. a writable path in a container).
+
+> **Node requirement for the on-demand prefix:** the self-heal loads the prefixed packages via `module.registerHooks`, available on Node **≥ 22.15** (on the 22.x line) or **≥ 23.5** (on the 23.x line). On an older Node the packages install but can't be loaded from the prefix — reinstall them into the install itself instead (works on every supported Node): `ONNXRUNTIME_NODE_INSTALL=skip npm install -g gitnexus` (Windows: `set ONNXRUNTIME_NODE_INSTALL=skip && npm install -g gitnexus`). Skipping only the CUDA download keeps full CPU embeddings (CPU embeddings don't need it). Check the result any time with `gitnexus doctor` (Embeddings → Support line).
+
 ### Analyze warns about unavailable FTS or VECTOR extensions
 
-GitNexus uses optional DuckDB extensions for BM25 and vector search. The `gitnexus serve` and MCP read paths only ever try to `LOAD` the extensions — they never block on a network install. The `analyze` command, by default, attempts one bounded out-of-process `INSTALL` if `LOAD` fails and proceeds even when that install times out, so the index is always written to disk; BM25/vector search degrade gracefully until the extensions become available.
+GitNexus uses optional DuckDB extensions for BM25 and vector search. The `gitnexus serve` and MCP read paths only ever try to `LOAD` the extensions — they never block on a network install. The `analyze` command, by default, attempts one bounded out-of-process install if `LOAD` fails (a plain `INSTALL` to download a missing extension, escalating to `FORCE INSTALL` only when the `LOAD` error shows the existing file is broken or truncated, so a permanent non-file failure does not re-download on every run) and proceeds even when that install times out, so the index is always written to disk; BM25/vector search degrade gracefully until the extensions become available.
 
 Configure the behavior with these environment variables:
 
-| Variable                                     | Values                       | Default             | Effect                                                                                                                                                                                                                                                                                   |
-| -------------------------------------------- | ---------------------------- | ------------------- | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
-| `GITNEXUS_LBUG_EXTENSION_INSTALL`            | `auto`, `load-only`, `never` | `auto`              | `auto` runs one bounded INSTALL if LOAD fails. `load-only` only uses already-installed extensions (recommended for offline / firewalled environments). `never` skips optional extensions entirely.                                                                                       |
-| `GITNEXUS_LBUG_EXTENSION_INSTALL_TIMEOUT_MS` | positive integer             | `15000`             | Wall-clock budget for the out-of-process `INSTALL` child before it is killed.                                                                                                                                                                                                            |
-| `GITNEXUS_FTS_STEMMER`                       | supported LadybugDB stemmer  | `porter`            | Stemmer used when rebuilding BM25/FTS indexes. Use `none` for CJK-heavy repositories, or a language stemmer such as `german`, `french`, or `spanish` when that better matches repository comments and identifiers. Re-run `gitnexus analyze --repair-fts` after changing it.              |
-| `GITNEXUS_FTS_CJK_SEGMENTATION`              | `none`, `bigram`             | `none`              | `bigram` inserts overlapping character-bigram boundaries into Chinese/Japanese Han-ideograph spans in `content`/`description` before FTS indexing, so LadybugDB's space-only tokenizer can see sub-phrase word boundaries. Scoped to CJK Unified Ideographs only — Japanese Hiragana/Katakana and Korean Hangul are not currently segmented. Unlike `GITNEXUS_FTS_STEMMER`, this rewrites stored text — enabling it on an already-indexed repo requires a full `gitnexus analyze --force`; neither `--repair-fts` nor a plain incremental `analyze` applies it to previously-indexed files. Set the same value wherever `analyze` and search-serving processes (CLI query, MCP server, web server) run. |
-| `GITNEXUS_WAL_CHECKPOINT_THRESHOLD`          | integer `>= -1`              | `67108864` (64 MiB) | LadybugDB WAL auto-checkpoint threshold during analyze (bytes). Auto-checkpoint remains enabled; `-1` keeps Ladybug's stock ~16 MiB. Larger thresholds reduce checkpoint frequency but increase the WAL size at rotation time — choose a smaller value on disk-constrained environments. |
+| Variable                                     | Values                         | Default             | Effect                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  |
+| -------------------------------------------- | ------------------------------ | ------------------- | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
+| `GITNEXUS_LBUG_EXTENSION_INSTALL`            | `auto`, `load-only`, `never`   | `auto`              | `auto` runs one bounded install if LOAD fails — a plain `INSTALL`, escalating to `FORCE INSTALL` only when the LOAD error shows the present extension file is broken. `load-only` only uses already-installed extensions (recommended for offline / firewalled environments). `never` skips optional extensions entirely.                                                                                                                                                                                                                                                                                                                                                                               |
+| `GITNEXUS_LBUG_EXTENSION_INSTALL_TIMEOUT_MS` | positive integer               | `15000`             | Wall-clock budget for the out-of-process extension-install child before it is killed.                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   |
+| `GITNEXUS_FTS_STEMMER`                       | supported LadybugDB stemmer    | `porter`            | Stemmer used when rebuilding BM25/FTS indexes. Use `none` for CJK-heavy repositories, or a language stemmer such as `german`, `french`, or `spanish` when that better matches repository comments and identifiers. Re-run `gitnexus analyze --repair-fts` after changing it.                                                                                                                                                                                                                                                                                                                                                                                                                            |
+| `GITNEXUS_FTS_CJK_SEGMENTATION`              | `none`, `bigram`               | `none`              | `bigram` inserts overlapping character-bigram boundaries into Chinese/Japanese Han-ideograph spans in `content`/`description` before FTS indexing, so LadybugDB's space-only tokenizer can see sub-phrase word boundaries. Scoped to CJK Unified Ideographs only — Japanese Hiragana/Katakana and Korean Hangul are not currently segmented. Unlike `GITNEXUS_FTS_STEMMER`, this rewrites stored text — enabling it on an already-indexed repo requires a full `gitnexus analyze --force`; neither `--repair-fts` nor a plain incremental `analyze` applies it to previously-indexed files. Set the same value wherever `analyze` and search-serving processes (CLI query, MCP server, web server) run. |
+| `GITNEXUS_COMMUNITY_ENGINE`                  | `graphology`, `icebug`, `auto` | `graphology`        | Community-detection engine used during analyze. `graphology` uses the bundled default path. `icebug` and `auto` currently behave identically: both try the experimental Icebug CSR path and fall back to Graphology if the optional native module is unavailable or incompatible.                                                                                                                                                                                                                                                                                                                                                                                                                       |
+| `GITNEXUS_WAL_CHECKPOINT_THRESHOLD`          | integer `>= -1`                | `67108864` (64 MiB) | LadybugDB WAL auto-checkpoint threshold during analyze (bytes). Auto-checkpoint remains enabled; `-1` keeps Ladybug's stock ~16 MiB. Larger thresholds reduce checkpoint frequency but increase the WAL size at rotation time — choose a smaller value on disk-constrained environments.                                                                                                                                                                                                                                                                                                                                                                                                                |
+| `GITNEXUS_LBUG_BUFFER_POOL_SIZE`             | integer `>= 0` (bytes)         | min(2 GiB, 80% RAM) | LadybugDB buffer-pool ceiling for every GitNexus database (analyze, MCP server, serve, group bridges). Bounded so a long-lived `gitnexus mcp` process or a large incremental `analyze` cannot grow toward LadybugDB's native 80%-of-RAM default and OOM the host (#2557). `0` restores that native unbounded default; invalid values warn and fall back to the default.                                                                                                                                                                                                                                                                                                                                  |
+| `GITNEXUS_LBUG_MAX_DB_SIZE`                  | positive integer (bytes)       | `17179869184` (16 GiB) | Upper bound for a single LadybugDB database file. This is an mmap/disk-address-space ceiling, not a memory limit — it does not constrain the buffer pool (use `GITNEXUS_LBUG_BUFFER_POOL_SIZE` for that). Raise it when indexing genuinely huge monorepos; invalid values silently fall back to the default.                                                                                                                                                                                                                                                                                                                                                                                             |
 
 ```bash
 # Offline/airgapped: never reach the network for extensions
@@ -415,9 +551,19 @@ For very large repositories:
 # Increase Node.js heap size
 NODE_OPTIONS="--max-old-space-size=16384" npx gitnexus analyze
 
-# Exclude large directories
+# Exclude large directories (this repo only)
 echo "vendor/" >> .gitnexusignore
 echo "dist/" >> .gitnexusignore
+
+# Exclude a directory across every repo you index, without touching each
+# repo's own .gitnexusignore or needing push/commit access to it. GitNexus
+# reads the same sources `git` itself does: core.excludesFile (all repos)
+# and $GIT_DIR/info/exclude (this repo only, untracked). A repo's own
+# .gitignore/.gitnexusignore can still override either with a `!pattern`
+# negation. Skip both entirely with GITNEXUS_NO_GLOBAL_IGNORE=1.
+git config --global core.excludesFile ~/.gitignore_global   # applies to every repo
+echo "docs/" >> ~/.gitignore_global
+echo "build/" >> .git/info/exclude                          # this repo only, untracked
 ```
 
 ### Large files are being skipped
@@ -452,35 +598,47 @@ For repositories with very large source files, `GITNEXUS_WORKER_SUB_BATCH_MAX_BY
 
 ### Worker pool resilience tuning
 
-Three env vars expose the pool's resilience layers (respawn budget, cumulative-timeout cap, circuit breaker). Defaults are tuned for typical repos; bump them when an analyze legitimately needs more retries, or lower them to fail-fast on a known-bad shape.
+Four env vars expose the pool's resilience layers (respawn budget, cumulative-timeout cap, circuit breaker, startup handshake). Defaults are tuned for typical repos; bump them when an analyze legitimately needs more retries, or lower them to fail-fast on a known-bad shape.
 
-| Variable                                        | Default                 | Effect                                                                                                                |
-| ----------------------------------------------- | ----------------------- | --------------------------------------------------------------------------------------------------------------------- |
-| `GITNEXUS_WORKER_MAX_RESPAWNS_PER_SLOT`         | `3`                     | Max replacement spawns per slot before the slot is dropped from the active rotation.                                  |
-| `GITNEXUS_WORKER_MAX_CUMULATIVE_TIMEOUT_MS`     | `5 × subBatchTimeoutMs` | Total retry wall-time budget per job before quarantining. Bounds exponentially-growing retry waits.                   |
-| `GITNEXUS_WORKER_CONSECUTIVE_FAILURE_THRESHOLD` | `max(3, poolSize)`      | Per-slot consecutive deaths before the pool's circuit breaker trips. After tripping, dispatches require a fresh pool. |
+| Variable                                        | Default                 | Effect                                                                                                                                                                                           |
+| ----------------------------------------------- | ----------------------- | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
+| `GITNEXUS_WORKER_MAX_RESPAWNS_PER_SLOT`         | `3`                     | Max replacement spawns per slot before the slot is dropped from the active rotation.                                                                                                             |
+| `GITNEXUS_WORKER_MAX_CUMULATIVE_TIMEOUT_MS`     | `5 × subBatchTimeoutMs` | Total retry wall-time budget per job before quarantining. Bounds exponentially-growing retry waits.                                                                                              |
+| `GITNEXUS_WORKER_CONSECUTIVE_FAILURE_THRESHOLD` | `max(3, poolSize)`      | Per-slot consecutive deaths before the pool's circuit breaker trips. After tripping, dispatches require a fresh pool.                                                                            |
+| `GITNEXUS_WORKER_SHUTDOWN_DRAIN_MS`             | `30000`                 | Max wait at pool shutdown for a retired worker still inside native code — terminated at its next JS-safe point instead of mid-native-call, which would abort the process (`Napi::Error`, #2432). |
+| `GITNEXUS_WORKER_READY_TIMEOUT_MS`              | `5000`                  | Startup budget for a parse worker to load its grammar bindings and report `{type:'ready'}`. Slots that miss it are treated as startup crashes. Raise it on a slow or heavily loaded host where a full pool cold-starting concurrently needs more than 5s. |
+| `GITNEXUS_CPP_CAPTURE_BUDGET_MS`                | `20000`                 | Per-file wall-clock budget for C++ capture extraction; on breach the file keeps partial captures with a warning (#2432). `0` expires immediately.                                                |
 
 ### Graph cleanup tuning
 
 After scope resolution, analyze prunes inert block-local value symbols (a function-local `const`/`let`/`var` that ends up with only its structural `File→DEFINES` edge) to keep the graph focused on cross-symbol relationships. Module/file-scope symbols, class members, and any local with a real edge are always kept.
 
-| Variable                             | Default | Effect                                                                                                  |
-| ------------------------------------ | ------- | ------------------------------------------------------------------------------------------------------- |
-| `GITNEXUS_KEEP_LOCAL_VALUE_SYMBOLS`  | unset   | Set to `1`/`true` to keep inert block-local value symbols instead of pruning them.                      |
+| Variable                            | Default | Effect                                                                             |
+| ----------------------------------- | ------- | ---------------------------------------------------------------------------------- |
+| `GITNEXUS_KEEP_LOCAL_VALUE_SYMBOLS` | unset   | Set to `1`/`true` to keep inert block-local value symbols instead of pruning them. |
 
 Programmatic callers can pass `keepLocalValueSymbols: true` in `PipelineOptions` instead of setting the env var.
 
-### Hook augmentation/notifications are silently skipped
+### Hook augmentation and skip diagnostics
 
-The Claude Code / Antigravity hooks intentionally stay **silent** on normal skip
+The Claude Code / Antigravity hooks keep their **stderr** silent on normal skip
 paths so strict hook runners (e.g. Codex `PreToolUse`) never see unexpected
-output. A search may not be augmented — or a stale-index reminder may not appear
-on stderr — when the GitNexus MCP server owns the repo DB, when the DB-lock probe
-times out and fails closed, or when the index is already current.
-
-To see why a hook skipped, set `GITNEXUS_DEBUG=1` and re-run the action — the hook
-writes the reason (e.g. `[GitNexus] augment skipped: MCP server owns DB`) and the
-stale-index hint to its stderr:
+diagnostic output.
+
+When a GitNexus process holds the repo DB write lock (the common case — the MCP
+server is running, or the DB-lock probe timed out and failed closed), the local
+CLI `augment` can't run (LadybugDB is single-writer). Rather than drop the
+augmentation, the hook hands the agent a short, conditional MCP-query hint on
+stdout (the sanctioned `additionalContext` channel) — _"if the GitNexus MCP tools
+are live in this session, call `query` …"_ — so an agent that has the tools can
+still fetch graph-ranked context. The hint is throttled to at most once per repo
+per window (`GITNEXUS_MCP_HINT_THROTTLE_MS`, default 10 min; `0` disables), so an
+owner-locked session isn't nudged on every search. A stale-index reminder, or an
+already-current index, stays silent.
+
+To see why a hook skipped the CLI augment, set `GITNEXUS_DEBUG=1` and re-run the
+action — the hook writes the reason (e.g. `[GitNexus] augment skipped: MCP server
+owns DB`) and the stale-index hint to its stderr:
 
 ```bash
 GITNEXUS_DEBUG=1 <your command>   # surfaces hook skip/diagnostic reasons on stderr

package/dist/_shared/graph/types.d.ts

@@ -5,7 +5,7 @@
  * Do NOT add Node.js-specific or browser-specific imports here.
  */
 import { SupportedLanguages } from '../languages.js';
-export type NodeLabel = 'Project' | 'Package' | 'Module' | 'Folder' | 'File' | 'Class' | 'Function' | 'Method' | 'Variable' | 'Interface' | 'Enum' | 'Decorator' | 'Import' | 'Type' | 'CodeElement' | 'Community' | 'Process' | 'Struct' | 'Macro' | 'Typedef' | 'Union' | 'Namespace' | 'Trait' | 'Impl' | 'TypeAlias' | 'Const' | 'Static' | 'Property' | 'Record' | 'Delegate' | 'Annotation' | 'Constructor' | 'Template' | 'Section' | 'Route' | 'Tool' | 'BasicBlock';
+export type NodeLabel = 'Project' | 'Package' | 'Module' | 'Folder' | 'File' | 'Class' | 'Function' | 'Method' | 'Variable' | 'Interface' | 'Enum' | 'Decorator' | 'Import' | 'Type' | 'CodeElement' | 'Community' | 'Process' | 'Struct' | 'Macro' | 'Typedef' | 'Union' | 'Namespace' | 'Trait' | 'Impl' | 'TypeAlias' | 'Const' | 'Static' | 'Property' | 'Record' | 'Delegate' | 'Annotation' | 'Constructor' | 'Template' | 'Section' | 'Route' | 'Tool' | 'EnumVariant' | 'BasicBlock';
 export type NodeProperties = {
     name: string;
     filePath: string;
@@ -48,13 +48,66 @@ export type NodeProperties = {
     responseKeys?: string[];
     errorKeys?: string[];
     middleware?: string[];
+    qualifiedName?: string;
+    moduleQualifiedName?: string;
+    moduleAddress?: string;
+    visibilityModifier?: string;
+    isEntry?: boolean;
+    isView?: boolean;
+    isInline?: boolean;
+    isNative?: boolean;
+    isResource?: boolean;
+    isEvent?: boolean;
+    isTest?: boolean;
+    isTestOnly?: boolean;
+    hasSpec?: boolean;
+    /** Subset of {'copy','drop','store','key'} — Move struct/enum abilities. */
+    abilities?: string[];
+    /** Resource qualified names from `acquiresInferred` (move-flow facts). */
+    acquires?: string[];
+    /** Generic type parameters (facts `typeParams`: abilities → constraints). */
+    typeParams?: Array<{
+        name: string;
+        constraints?: string[];
+        isPhantom?: boolean;
+    }>;
+    /** Resource qualified names reached transitively (move-flow function_usage). */
+    usedTypes?: string[];
+    /** Full attribute name list (`["view","event","test_only",...]`). */
+    attributes?: string[];
+    /** Full attribute payload as JSON - nested `args` and assignment `value`s,
+     *  e.g. `[{"name":"resource_group_member","args":[{"name":"group","value":"0xa::vault::Group"}]}]`.
+     *  Persisted without a code consumer, deliberately: preserving attribute
+     *  args/values is the whole point, and the raw Cypher surface (MCP `cypher`
+     *  tool) makes the column user-queryable directly - re-deriving it later
+     *  would cost another full re-index. Unset (not `"[]"`) when the symbol has
+     *  no attributes. */
+    attributesJson?: string;
+    /** Parsed `#[expected_failure(...)]` payload (true for the bare form). */
+    expectedFailure?: true | Record<string, string>;
+    /** Move 1 vs Move 2 distinction: `'struct'` or `'enum'`. */
+    moveDeclarationKind?: 'struct' | 'enum';
+    /** EnumVariant shape (facts `variants[].kind`). */
+    variantKind?: 'unit' | 'positional' | 'named';
+    /** Struct / variant fields (facts `fields`: name/type/positional). */
+    fields?: Array<{
+        name: string;
+        type: string;
+        positional?: boolean;
+    }>;
+    /**
+     * Node-location precision. `'precise'` = per-symbol file/span from the
+     * move-flow `facts` query; `'module'` = only the containing module/type file
+     * is known; `'package'` = coarse package-root fallback.
+     */
+    locationFidelity?: 'precise' | 'module' | 'package';
     text?: string;
     /** BasicBlock: space-joined leaf callee names invoked in the block — the
      *  statement-precise inter-procedural reach substrate for impact mode. */
     callees?: string;
     [key: string]: unknown;
 };
-export type RelationshipType = 'CONTAINS' | 'CALLS' | 'INHERITS' | 'METHOD_OVERRIDES' | 'METHOD_IMPLEMENTS' | 'IMPORTS' | 'USES' | 'DEFINES' | 'DECORATES' | 'IMPLEMENTS' | 'EXTENDS' | 'HAS_METHOD' | 'HAS_PROPERTY' | 'ACCESSES' | 'MEMBER_OF' | 'STEP_IN_PROCESS' | 'HANDLES_ROUTE' | 'FETCHES' | 'HANDLES_TOOL' | 'ENTRY_POINT_OF' | 'WRAPS' | 'QUERIES'
+export type RelationshipType = 'CONTAINS' | 'CALLS' | 'INHERITS' | 'METHOD_OVERRIDES' | 'OVERRIDES' | 'METHOD_IMPLEMENTS' | 'IMPORTS' | 'USES' | 'DEFINES' | 'DECORATES' | 'IMPLEMENTS' | 'EXTENDS' | 'HAS_METHOD' | 'HAS_PROPERTY' | 'ACCESSES' | 'MEMBER_OF' | 'STEP_IN_PROCESS' | 'HANDLES_ROUTE' | 'FETCHES' | 'HANDLES_TOOL' | 'ENTRY_POINT_OF' | 'WRAPS' | 'QUERIES'
 /** Dependency-injection edge: a consumer class receives every implementer
  *  of interface `T` via a container-injected collection-typed field
  *  (`List<T>`, `Set<T>`, `Collection<T>`, or `Map<K,T>`). Precondition: the
@@ -75,7 +128,18 @@ export type RelationshipType = 'CONTAINS' | 'CALLS' | 'INHERITS' | 'METHOD_OVERR
  *  `reason` encodes the event name: `vue-event: @<eventName>`.
  *  Complements `EMITS_EVENT`; together they enable Cypher queries that
  *  trace which handlers receive which component's emitted events. */
- | 'BINDS_EVENT_HANDLER'
+/** `friend` module declaration: source module → friend module. */
+ | 'FRIEND_OF'
+/** Function reads a resource (`facts.resourceAccess.reads`). */
+ | 'READS_RESOURCE'
+/** Function writes a resource (`facts.resourceAccess.writes`). */
+ | 'WRITES_RESOURCE'
+/** Function acquires a resource (`facts.acquiresInferred`). */
+ | 'ACQUIRES'
+/** Function signature mentions a Move struct/enum type. */
+ | 'USES_TYPE'
+/** Reserved: function emits an event struct (not yet sourced from facts). */
+ | 'EMITS' | 'BINDS_EVENT_HANDLER'
 /** Vue component event system: a component calls `emit('eventName', ...)`
  *  or `this.$emit('eventName', ...)`, advertising that it can emit that event.
  *  Source = the component's own File node (self-referential annotation).

package/dist/_shared/graph/types.d.ts.map

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package/dist/_shared/index.d.ts

@@ -22,6 +22,7 @@ export { resolveTypeRef } from './scope-resolution/resolve-type-ref.js';
 export type { ResolveTypeRefContext } from './scope-resolution/resolve-type-ref.js';
 export type { ParsedFile } from './scope-resolution/parsed-file.js';
 export type { ReferenceSite, ReferenceKind, CallForm } from './scope-resolution/reference-site.js';
+export type { CallableFlowOperand, CallableFlowExpectedSignature, CallableFlowPassingMode, CallableFlowInvocationKind, CallableFlowSeedSite, CallableFlowCopySite, CallableFlowAliasSite, CallableFlowAddressSite, CallableFlowStoreSite, CallableFlowLoadSite, CallableFlowFormalSite, CallableFlowArgumentSite, CallableFlowInvokeSite, CallableFlowSite, } from './scope-resolution/callable-flow-site.js';
 export { buildMethodDispatchIndex } from './scope-resolution/method-dispatch-index.js';
 export type { MethodDispatchIndex, MethodDispatchInput, } from './scope-resolution/method-dispatch-index.js';
 export { finalize } from './scope-resolution/finalize-algorithm.js';

package/dist/_shared/index.d.ts.map

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@@ -1 +1 @@
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+{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AASA,mBAAmB;AACnB,OAAO,EACL,WAAW,EACX,cAAc,EACd,SAAS,EACT,oBAAoB,GACrB,MAAM,4BAA4B,CAAC;AAGpC,mBAAmB;AACnB,OAAO,EAAE,kBAAkB,EAAE,MAAM,gBAAgB,CAAC;AACpD,OAAO,EACL,uBAAuB,EACvB,6BAA6B,EAC7B,uBAAuB,GACxB,MAAM,yBAAyB,CAAC;AAiCjC,8DAA8D;AAC9D,OAAO,EAAE,eAAe,EAAE,wBAAwB,EAAE,MAAM,wCAAwC,CAAC;AACnG,OAAO,EAAE,eAAe,EAAE,MAAM,uCAAuC,CAAC;AAGxE,yDAAyD;AACzD,OAAO,EACL,uBAAuB,EACvB,oBAAoB,GACrB,MAAM,+CAA+C,CAAC;AAGvD,sEAAsE;AACtE,OAAO,EAAE,aAAa,EAAE,MAAM,iCAAiC,CAAC;AAEhE,OAAO,EAAE,qBAAqB,EAAE,MAAM,0CAA0C,CAAC;AAEjF,OAAO,EAAE,uBAAuB,EAAE,MAAM,4CAA4C,CAAC;AAGrF,gEAAgE;AAChE,yEAAyE;AACzE,2DAA2D;AAC3D,OAAO,EAAE,cAAc,EAAE,MAAM,wCAAwC,CAAC;AAuBxE,oFAAoF;AACpF,OAAO,EAAE,wBAAwB,EAAE,MAAM,6CAA6C,CAAC;AAMvF,uEAAuE;AACvE,OAAO,EAAE,QAAQ,EAAE,MAAM,0CAA0C,CAAC;AAUpE,sEAAsE;AACtE,OAAO,EAAE,kBAAkB,EAAE,MAAM,iDAAiD,CAAC;AAErF,OAAO,EAAE,mBAAmB,EAAE,MAAM,kDAAkD,CAAC;AAKvF,OAAO,EAAE,kBAAkB,EAAE,MAAM,iDAAiD,CAAC;AAKrF,OAAO,EAAE,kBAAkB,EAAE,MAAM,iDAAiD,CAAC;AAErF,OAAO,EAAE,UAAU,EAAE,MAAM,8CAA8C,CAAC;AAE1E,OAAO,EAAE,eAAe,EAAE,MAAM,mDAAmD,CAAC;AAEpF,OAAO,EAAE,eAAe,EAAE,sBAAsB,EAAE,MAAM,2CAA2C,CAAC;AAEpG,OAAO,EACL,gCAAgC,EAChC,kBAAkB,GACnB,MAAM,6CAA6C,CAAC;AAErD,OAAO,EACL,WAAW,EACX,YAAY,EACZ,WAAW,EACX,WAAW,GACZ,MAAM,0CAA0C,CAAC;AAUlD,2EAA2E;AAC3E,OAAO,EAAE,WAAW,EAAE,sBAAsB,EAAE,MAAM,gCAAgC,CAAC;AAErF,OAAO,EACL,cAAc,EACd,cAAc,EACd,uBAAuB,GACxB,MAAM,kCAAkC,CAAC;AAE1C,OAAO,EAAE,kBAAkB,EAAE,MAAM,sCAAsC,CAAC;AAG1E,8EAA8E;AAC9E,wEAAwE;AACxE,wEAAwE;AACxE,8DAA8D;AAC9D,OAAO,EAAE,SAAS,EAAE,gBAAgB,EAAE,MAAM,yBAAyB,CAAC;AAEtE,OAAO,EAAE,cAAc,EAAE,gBAAgB,EAAE,UAAU,EAAE,MAAM,mCAAmC,CAAC;AAEjG,OAAO,EACL,cAAc,EACd,4BAA4B,EAC5B,kBAAkB,EAClB,eAAe,GAChB,MAAM,mCAAmC,CAAC;AAG3C,mDAAmD;AACnD,OAAO,EACL,+BAA+B,EAC/B,6BAA6B,EAC7B,4BAA4B,EAC5B,sBAAsB,EACtB,gBAAgB,EAChB,wBAAwB,EACxB,cAAc,GACf,MAAM,sCAAsC,CAAC"}

package/dist/_shared/integrations/resilient-fetch.d.ts

@@ -25,6 +25,8 @@ export interface ResilientFetchOptions {
     breakerOptions?: CircuitBreakerOptions;
     /** Tuning knobs for the retry helper. */
     retry?: Partial<Pick<RetryOptions, 'maxAttempts' | 'baseDelayMs' | 'capDelayMs'>> & {
+        /** Upper bound on a single Retry-After wait. Defaults to RETRY_AFTER_CAP_MS. */
+        retryAfterCapMs?: number;
         sleep?: RetryOptions['sleep'];
         random?: RetryOptions['random'];
     };
@@ -64,7 +66,7 @@ export declare function classifyOutcome(result: {
 } | {
     kind: 'response';
     resp: Response;
-}, now: () => number): Outcome;
+}, now: () => number, retryAfterCapMs?: number): Outcome;
 /** Final error thrown when retries are exhausted on a 5xx / 429. */
 export declare class ResilientFetchExhaustedError extends Error {
     readonly response: Response;