gitnexus 1.6.8-rc.52 → 1.6.8-rc.54

package/dist/core/embeddings/server-mapping.d.ts

@@ -1,7 +1,7 @@
 /**
  * Server Mapping Configuration
  *
- * Reads ~/.gitnexus/server-mapping.json to map repo names to service names.
+ * Reads getGlobalDir()/server-mapping.json to map repo names to service names.
  * Used in embedding text to enrich metadata with microservice context.
  */
 /**

package/dist/core/embeddings/server-mapping.js

@@ -1,13 +1,17 @@
 /**
  * Server Mapping Configuration
  *
- * Reads ~/.gitnexus/server-mapping.json to map repo names to service names.
+ * Reads getGlobalDir()/server-mapping.json to map repo names to service names.
  * Used in embedding text to enrich metadata with microservice context.
  */
 import fs from 'fs/promises';
 import path from 'path';
-import os from 'os';
-const MAPPING_FILE = path.join(os.homedir(), '.gitnexus', 'server-mapping.json');
+import { getGlobalDir } from '../../storage/repo-manager.js';
+// Sourced from getGlobalDir() so it honors GITNEXUS_HOME (the Docker image sets
+// GITNEXUS_HOME=/data/gitnexus); falls back to ~/.gitnexus when unset. Wrapped in
+// path.resolve() for parity with the clone/upload roots (git-clone.ts CLONE_ROOT,
+// upload-paths.ts UPLOAD_ROOT) so a relative GITNEXUS_HOME still yields an absolute path.
+const MAPPING_FILE = path.resolve(path.join(getGlobalDir(), 'server-mapping.json'));
 let cachedMapping = null;
 /**
  * Read the server mapping file and return the serverName for a given repoName.

package/dist/core/ingestion/languages/cpp/captures.js

@@ -551,6 +551,8 @@ function isFollowedByPackExpansion(baseClause, childIndex) {
             return true;
         if (sibling.type === ',' || sibling.type === 'access_specifier')
             return false;
+        if (sibling.type === 'comment')
+            continue;
         if (sibling.isNamed)
             return false;
     }

package/dist/server/git-clone.d.ts

@@ -1,7 +1,7 @@
 /**
  * Git Clone Utility
  *
- * Shallow-clones repositories into ~/.gitnexus/repos/{name}/.
+ * Shallow-clones repositories into the clone root (getGlobalDir()/repos/{name}/).
  * If already cloned, does git pull instead.
  */
 export declare const REPO_NAME_PATTERN: RegExp;

package/dist/server/git-clone.js

@@ -1,18 +1,27 @@
 /**
  * Git Clone Utility
  *
- * Shallow-clones repositories into ~/.gitnexus/repos/{name}/.
+ * Shallow-clones repositories into the clone root (getGlobalDir()/repos/{name}/).
  * If already cloned, does git pull instead.
  */
 import { spawn } from 'child_process';
 import path from 'path';
-import os from 'os';
 import fs from 'fs/promises';
 import { isIP } from 'net';
 import { logger } from '../core/logger.js';
 import { parseRepoNameFromUrl } from '../storage/git.js';
-/** Root directory for all cloned repositories. Targets must resolve inside this. */
-const CLONE_ROOT = path.resolve(path.join(os.homedir(), '.gitnexus', 'repos'));
+import { getGlobalDir } from '../storage/repo-manager.js';
+/**
+ * Root directory for all cloned repositories. Targets must resolve inside this.
+ *
+ * Sourced from getGlobalDir() so it honors GITNEXUS_HOME — the Docker image sets
+ * GITNEXUS_HOME=/data/gitnexus, the persistent volume that also holds the
+ * registry and indexes. Without this, clones landed in the container's
+ * ephemeral ~/.gitnexus/repos and were lost on container recreation while the
+ * registry still pointed at the dead path. Falls back to ~/.gitnexus when the
+ * env var is unset (CLI / local installs), matching the prior behavior exactly.
+ */
+const CLONE_ROOT = path.resolve(path.join(getGlobalDir(), 'repos'));
 // A valid git repository name is filesystem-safe: alphanumerics plus `. _ -`.
 // Rejecting anything else (including `..`, `/`, `\`, shell metacharacters)
 // guarantees getCloneDir(repoName) cannot escape CLONE_ROOT regardless of

package/dist/server/upload-paths.d.ts

@@ -1,7 +1,7 @@
 /**
  * Upload working-directory paths.
  *
- * Browser folder uploads are written into ~/.gitnexus/uploads/{name}/ — a
+ * Browser folder uploads are written into getGlobalDir()/uploads/{name}/ — a
  * sibling of the clone root (git-clone.ts CLONE_ROOT) — so an uploaded repo
  * persists and behaves like a cloned one (the graph UI's /api/file reads its
  * files after analysis, and DELETE /api/repo removes it). Staging happens in
@@ -10,7 +10,13 @@
  * the exact Docker case this feature targets; see bridge-db.ts for the same
  * anchored-staging pattern).
  */
-/** Root directory for all uploaded repositories. Targets must resolve inside this. */
+/**
+ * Root directory for all uploaded repositories. Targets must resolve inside this.
+ *
+ * Sourced from getGlobalDir() so it honors GITNEXUS_HOME and stays a sibling of
+ * the clone root on the same (in Docker, persistent) volume. Falls back to
+ * ~/.gitnexus when the env var is unset.
+ */
 export declare const UPLOAD_ROOT: string;
 /** Prefix for per-upload staging directories created under UPLOAD_ROOT. */
 export declare const STAGING_PREFIX = ".staging-";

package/dist/server/upload-paths.js

@@ -1,7 +1,7 @@
 /**
  * Upload working-directory paths.
  *
- * Browser folder uploads are written into ~/.gitnexus/uploads/{name}/ — a
+ * Browser folder uploads are written into getGlobalDir()/uploads/{name}/ — a
  * sibling of the clone root (git-clone.ts CLONE_ROOT) — so an uploaded repo
  * persists and behaves like a cloned one (the graph UI's /api/file reads its
  * files after analysis, and DELETE /api/repo removes it). Staging happens in
@@ -11,11 +11,17 @@
  * anchored-staging pattern).
  */
 import path from 'path';
-import os from 'os';
 import { sanitizeRepoName } from '../storage/git.js';
 import { REPO_NAME_PATTERN } from './git-clone.js';
-/** Root directory for all uploaded repositories. Targets must resolve inside this. */
-export const UPLOAD_ROOT = path.resolve(path.join(os.homedir(), '.gitnexus', 'uploads'));
+import { getGlobalDir } from '../storage/repo-manager.js';
+/**
+ * Root directory for all uploaded repositories. Targets must resolve inside this.
+ *
+ * Sourced from getGlobalDir() so it honors GITNEXUS_HOME and stays a sibling of
+ * the clone root on the same (in Docker, persistent) volume. Falls back to
+ * ~/.gitnexus when the env var is unset.
+ */
+export const UPLOAD_ROOT = path.resolve(path.join(getGlobalDir(), 'uploads'));
 /** Prefix for per-upload staging directories created under UPLOAD_ROOT. */
 export const STAGING_PREFIX = '.staging-';
 /**

package/hooks/claude/hook-db-lock-probe.cjs

@@ -99,6 +99,17 @@ function resolveHookBinary(tool) {
   return tool;
 }
 
+function hasMissingHookBinaryOverride(tool) {
+  const envKey = tool === 'lsof' ? 'GITNEXUS_HOOK_LSOF_PATH' : 'GITNEXUS_HOOK_PS_PATH';
+  const fromEnv = process.env[envKey];
+  if (!fromEnv || !String(fromEnv).trim()) return false;
+  try {
+    return !fs.existsSync(String(fromEnv).trim());
+  } catch {
+    return true;
+  }
+}
+
 // Sentinel:
 //   undefined = not resolved yet (resolve lazily, on first lsof/ps fallback)
 //   string    = self-tested coreutils timeout/gtimeout path (use as wrapper)
@@ -597,6 +608,9 @@ function linuxProcScanFindGitNexusServer(dbPathAbs, myPid) {
 
 function unixLsofPsFindGitNexusServer(dbPathAbs, myPid) {
   const guard = resolveUnixGuardTimeout();
+  // An explicit missing override models ENOENT and must fail open instead of
+  // falling through to a host binary with different process-table visibility.
+  if (hasMissingHookBinaryOverride('lsof')) return false;
   const lsofPath = resolveHookBinary('lsof');
   // The spawnSync timeouts below (lsof 1000ms / ps 500ms) are deliberately
   // SHORTER than the wrapper budgets (2s / 1s): on the supervised path Node's
@@ -629,9 +643,12 @@ function unixLsofPsFindGitNexusServer(dbPathAbs, myPid) {
   if (guard && (lsof.status === 124 || lsof.status === 137)) return true;
 
   const pids = (lsof.stdout || '').split(/\s+/).filter(Boolean);
+  const psMissing = hasMissingHookBinaryOverride('ps');
   const psPath = resolveHookBinary('ps');
   for (const pid of pids) {
     if (Number(pid) === myPid) continue;
+    // Missing ps means we cannot verify that this pid is a GitNexus server.
+    if (psMissing) continue;
     const [psCmd, psArgs] = guard
       ? [guard, ['-k', '1', '1', psPath, '-p', pid, '-o', 'command=']]
       : [psPath, ['-p', pid, '-o', 'command=']];

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "gitnexus",
-  "version": "1.6.8-rc.52",
+  "version": "1.6.8-rc.54",
   "description": "Graph-powered code intelligence for AI agents. Index any codebase, query via MCP or CLI.",
   "author": "Abhigyan Patwari",
   "license": "PolyForm-Noncommercial-1.0.0",