gitnexus 1.6.4-rc.7 → 1.6.4-rc.71

package/README.md

@@ -156,6 +156,7 @@ gitnexus analyze --embeddings    # Enable embedding generation (slower, better s
 gitnexus analyze --skip-agents-md  # Preserve custom AGENTS.md/CLAUDE.md gitnexus section edits
 gitnexus analyze --verbose       # Log skipped files when parsers are unavailable
 gitnexus analyze --max-file-size 1024  # Skip files larger than N KB (default: 512, cap: 32768)
+gitnexus analyze --worker-timeout 60  # Increase worker idle timeout for slow parses
 gitnexus mcp                     # Start MCP server (stdio) — serves all indexed repos
 gitnexus serve                   # Start local HTTP server (multi-repo) for web UI
 gitnexus index                   # Register an existing .gitnexus/ folder into the global registry
@@ -295,6 +296,25 @@ If `npm install -g gitnexus` fails on native modules:
 npm install -g gitnexus
 ```
 
+### Analyze warns about unavailable FTS or VECTOR extensions
+
+GitNexus uses optional DuckDB extensions for BM25 and vector search. The `gitnexus serve` and MCP read paths only ever try to `LOAD` the extensions — they never block on a network install. The `analyze` command, by default, attempts one bounded out-of-process `INSTALL` if `LOAD` fails and proceeds even when that install times out, so the index is always written to disk; BM25/vector search degrade gracefully until the extensions become available.
+
+Configure the behavior with two environment variables:
+
+| Variable | Values | Default | Effect |
+|----------|--------|---------|--------|
+| `GITNEXUS_LBUG_EXTENSION_INSTALL` | `auto`, `load-only`, `never` | `auto` | `auto` runs one bounded INSTALL if LOAD fails. `load-only` only uses already-installed extensions (recommended for offline / firewalled environments). `never` skips optional extensions entirely. |
+| `GITNEXUS_LBUG_EXTENSION_INSTALL_TIMEOUT_MS` | positive integer | `15000` | Wall-clock budget for the out-of-process `INSTALL` child before it is killed. |
+
+```bash
+# Offline/airgapped: never reach the network for extensions
+GITNEXUS_LBUG_EXTENSION_INSTALL=load-only npx gitnexus analyze
+
+# Slow network: give extension downloads more time
+GITNEXUS_LBUG_EXTENSION_INSTALL_TIMEOUT_MS=30000 npx gitnexus analyze
+```
+
 ### Analysis runs out of memory
 
 For very large repositories:
@@ -323,6 +343,21 @@ npx gitnexus analyze
 
 Values above **32768 KB (32 MB)** are clamped to the tree-sitter parser ceiling; invalid values fall back to the 512 KB default with a one-time warning. When an override is active, `analyze` prints the effective threshold in its startup banner (e.g. `GITNEXUS_MAX_FILE_SIZE: effective threshold 2048KB (default 512KB)`).
 
+### Analyze reports a worker timeout
+
+Worker parse timeouts are recoverable. GitNexus retries stalled worker jobs with backoff, splits large jobs to isolate slow files, and falls back to the sequential parser when needed. If a large repository needs more time per worker job, use either:
+
+```bash
+# CLI flag, in seconds
+npx gitnexus analyze --worker-timeout 60
+
+# Environment variable, in milliseconds
+export GITNEXUS_WORKER_SUB_BATCH_TIMEOUT_MS=60000
+npx gitnexus analyze
+```
+
+For repositories with very large source files, `GITNEXUS_WORKER_SUB_BATCH_MAX_BYTES` controls the worker job byte budget. The default is **8388608 bytes (8 MB)**.
+
 ## Privacy
 
 - All processing happens locally on your machine

package/dist/_shared/index.d.ts

@@ -44,7 +44,7 @@ export { CLASS_KINDS, METHOD_KINDS, FIELD_KINDS } from './scope-resolution/regis
 export type { RegistryContext, RegistryProviders, OwnerScopedContributor, ArityVerdict, } from './scope-resolution/registries/context.js';
 export { makeScopeId, clearScopeIdInternPool } from './scope-resolution/scope-id.js';
 export type { ScopeIdInput } from './scope-resolution/scope-id.js';
-export { buildScopeTree, ScopeTreeInvariantError } from './scope-resolution/scope-tree.js';
+export { buildScopeTree, canParentScope, ScopeTreeInvariantError, } from './scope-resolution/scope-tree.js';
 export type { ScopeTree } from './scope-resolution/scope-tree.js';
 export { buildPositionIndex } from './scope-resolution/position-index.js';
 export type { PositionIndex } from './scope-resolution/position-index.js';

package/dist/_shared/index.d.ts.map

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package/dist/_shared/index.js

@@ -31,7 +31,7 @@ export { compareByConfidenceWithTiebreaks, CONFIDENCE_EPSILON, } from './scope-r
 export { CLASS_KINDS, METHOD_KINDS, FIELD_KINDS } from './scope-resolution/registries/context.js';
 // Scope tree spine + position lookup (RFC §2.2 + §3.1; Ring 2 SHARED #912)
 export { makeScopeId, clearScopeIdInternPool } from './scope-resolution/scope-id.js';
-export { buildScopeTree, ScopeTreeInvariantError } from './scope-resolution/scope-tree.js';
+export { buildScopeTree, canParentScope, ScopeTreeInvariantError, } from './scope-resolution/scope-tree.js';
 export { buildPositionIndex } from './scope-resolution/position-index.js';
 // Shadow-mode diff + aggregation (RFC §6.3; Ring 2 SHARED #918)
 export { diffResolutions } from './scope-resolution/shadow/diff.js';

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+{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AASA,mBAAmB;AACnB,OAAO,EACL,WAAW,EACX,cAAc,EACd,SAAS,EACT,oBAAoB,GACrB,MAAM,4BAA4B,CAAC;AAGpC,mBAAmB;AACnB,OAAO,EAAE,kBAAkB,EAAE,MAAM,gBAAgB,CAAC;AACpD,OAAO,EAAE,uBAAuB,EAAE,6BAA6B,EAAE,MAAM,yBAAyB,CAAC;AAiCjG,8DAA8D;AAC9D,OAAO,EAAE,eAAe,EAAE,wBAAwB,EAAE,MAAM,wCAAwC,CAAC;AACnG,OAAO,EAAE,eAAe,EAAE,MAAM,uCAAuC,CAAC;AAGxE,yDAAyD;AACzD,OAAO,EACL,uBAAuB,EACvB,oBAAoB,GACrB,MAAM,+CAA+C,CAAC;AAGvD,sEAAsE;AACtE,OAAO,EAAE,aAAa,EAAE,MAAM,iCAAiC,CAAC;AAEhE,OAAO,EAAE,qBAAqB,EAAE,MAAM,0CAA0C,CAAC;AAEjF,OAAO,EAAE,uBAAuB,EAAE,MAAM,4CAA4C,CAAC;AAGrF,gEAAgE;AAChE,yEAAyE;AACzE,2DAA2D;AAC3D,OAAO,EAAE,cAAc,EAAE,MAAM,wCAAwC,CAAC;AAOxE,oFAAoF;AACpF,OAAO,EAAE,wBAAwB,EAAE,MAAM,6CAA6C,CAAC;AAMvF,uEAAuE;AACvE,OAAO,EAAE,QAAQ,EAAE,MAAM,0CAA0C,CAAC;AAUpE,sEAAsE;AACtE,OAAO,EAAE,kBAAkB,EAAE,MAAM,iDAAiD,CAAC;AAErF,OAAO,EAAE,mBAAmB,EAAE,MAAM,kDAAkD,CAAC;AAKvF,OAAO,EAAE,kBAAkB,EAAE,MAAM,iDAAiD,CAAC;AAKrF,OAAO,EAAE,UAAU,EAAE,MAAM,8CAA8C,CAAC;AAE1E,OAAO,EAAE,eAAe,EAAE,MAAM,mDAAmD,CAAC;AAEpF,OAAO,EAAE,eAAe,EAAE,sBAAsB,EAAE,MAAM,2CAA2C,CAAC;AAEpG,OAAO,EACL,gCAAgC,EAChC,kBAAkB,GACnB,MAAM,6CAA6C,CAAC;AAErD,OAAO,EAAE,WAAW,EAAE,YAAY,EAAE,WAAW,EAAE,MAAM,0CAA0C,CAAC;AAQlG,2EAA2E;AAC3E,OAAO,EAAE,WAAW,EAAE,sBAAsB,EAAE,MAAM,gCAAgC,CAAC;AAErF,OAAO,EACL,cAAc,EACd,cAAc,EACd,uBAAuB,GACxB,MAAM,kCAAkC,CAAC;AAE1C,OAAO,EAAE,kBAAkB,EAAE,MAAM,sCAAsC,CAAC;AAG1E,gEAAgE;AAChE,OAAO,EAAE,eAAe,EAAE,MAAM,mCAAmC,CAAC;AAMpE,OAAO,EAAE,cAAc,EAAE,MAAM,wCAAwC,CAAC"}

package/dist/_shared/scope-resolution/finalize-algorithm.d.ts

@@ -83,7 +83,7 @@ export interface FinalizeHooks {
      * Return `null` when no target file is resolvable (e.g., `np.foo` when
      * `numpy` is external to the workspace).
      */
-    resolveImportTarget(targetRaw: string, fromFile: string, workspaceIndex: WorkspaceIndex): string | null;
+    resolveImportTarget(targetRaw: string, fromFile: string, workspaceIndex: WorkspaceIndex): string | readonly string[] | null;
     /**
      * For a wildcard `import * from M`, return the names visible in the
      * exporting module scope `M`. The finalize pass looks each name up in
@@ -109,20 +109,22 @@ export interface FinalizedScc {
 /**
  * Counters reported by `finalize`.
  *
- * **Counting granularity** — all edge counters are **per-`ParsedImport`**,
- * not per-materialized-`ImportEdge`. A single `wildcard` ParsedImport that
- * expands to N exports counts as one linked edge in these stats; the
- * materialized output (`FinalizeOutput.imports`) will have N edges for
- * that input. `dynamic-unresolved` ParsedImports count as linked (they
- * pass through with no `linkStatus`), so `linkedEdges` ≠ "has a
+ * **Counting granularity** — `totalEdges` is **per-generated-`ImportEdgeDraft`**,
+ * which may exceed the number of `ParsedImport` records when
+ * `resolveImportTarget` returns a multi-file array (e.g. Go package-scoped
+ * imports fan out to every `.go` file in the target directory). A single
+ * `wildcard` ParsedImport that expands to N exports also counts as one
+ * linked edge here; the materialized output (`FinalizeOutput.imports`) will
+ * have N edges for that input. `dynamic-unresolved` ParsedImports count as
+ * linked (they pass through with no `linkStatus`), so `linkedEdges` ≠ "has a
  * BindingRef" — use the `bindings` map for that.
  *
- * In other words: `totalEdges === input.parsedImports.length` summed
+ * In other words: `totalEdges >= input.parsedImports.length` summed
  * across files, and `linkedEdges + unresolvedEdges === totalEdges`.
  */
 export interface FinalizeStats {
     readonly totalFiles: number;
-    /** Total `ParsedImport` records seen across all files. */
+    /** Total `ImportEdgeDraft` records generated (≥ ParsedImport count). */
     readonly totalEdges: number;
     /**
      * `ParsedImport`s whose finalized edge does NOT carry

package/dist/_shared/scope-resolution/finalize-algorithm.d.ts.map

@@ -1 +1 @@
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package/dist/_shared/scope-resolution/finalize-algorithm.js

@@ -44,9 +44,9 @@ export function finalize(input, hooks) {
     for (const file of input.files) {
         const drafts = [];
         for (const parsed of file.parsedImports) {
-            const draft = makeEdgeDraft(parsed, file, hooks, input.workspaceIndex);
-            drafts.push(draft);
-            totalEdges++;
+            const draftArray = makeEdgeDrafts(parsed, file, hooks, input.workspaceIndex);
+            drafts.push(...draftArray);
+            totalEdges += draftArray.length;
         }
         edgeIndex.set(file.filePath, drafts);
     }
@@ -172,7 +172,7 @@ export function finalize(input, hooks) {
         stats,
     });
 }
-function makeEdgeDraft(parsed, file, hooks, workspace) {
+function makeEdgeDrafts(parsed, file, hooks, workspace) {
     // Dynamic-unresolved passes through — no `BindingRef`, no target file.
     if (parsed.kind === 'dynamic-unresolved') {
         const base = {
@@ -181,14 +181,16 @@ function makeEdgeDraft(parsed, file, hooks, workspace) {
             targetExportedName: '',
             kind: 'dynamic-unresolved',
         };
-        return {
-            source: parsed,
-            fromFile: file.filePath,
-            fromScope: file.moduleScope,
-            targetFile: null,
-            base,
-            finalized: base, // already fully finalized
-        };
+        return [
+            {
+                source: parsed,
+                fromFile: file.filePath,
+                fromScope: file.moduleScope,
+                targetFile: null,
+                base,
+                finalized: base, // already fully finalized
+            },
+        ];
     }
     const targetFile = hooks.resolveImportTarget(parsed.targetRaw ?? '', file.filePath, workspace);
     // Edge is unresolvable at the file level — mark unresolved now.
@@ -200,35 +202,40 @@ function makeEdgeDraft(parsed, file, hooks, workspace) {
             kind: edgeKindFor(parsed),
             linkStatus: 'unresolved',
         };
-        return {
-            source: parsed,
-            fromFile: file.filePath,
-            fromScope: file.moduleScope,
-            targetFile: null,
-            base,
-            finalized: base,
-        };
+        return [
+            {
+                source: parsed,
+                fromFile: file.filePath,
+                fromScope: file.moduleScope,
+                targetFile: null,
+                base,
+                finalized: base,
+            },
+        ];
     }
     // Resolvable at the file level; intra-SCC fixpoint may still fail to fill
     // in `targetDefId` (e.g., symbol not exported from target). Side-effect
     // and resolved-dynamic imports are terminal at the file level — no
     // `targetDefId` needed since they materialize no `BindingRef`. Pre-
     // finalize them here so the fixpoint loop skips them entirely.
-    const base = {
-        localName: extractLocalName(parsed),
-        targetFile,
-        targetExportedName: extractExportedName(parsed),
-        kind: edgeKindFor(parsed),
-    };
+    const targetFiles = Array.isArray(targetFile) ? targetFile : [targetFile];
     const isFileLevelTerminal = parsed.kind === 'side-effect' || parsed.kind === 'dynamic-resolved';
-    return {
-        source: parsed,
-        fromFile: file.filePath,
-        fromScope: file.moduleScope,
-        targetFile,
-        base,
-        finalized: isFileLevelTerminal ? base : null,
-    };
+    return targetFiles.map((tf) => {
+        const base = {
+            localName: extractLocalName(parsed),
+            targetFile: tf,
+            targetExportedName: extractExportedName(parsed),
+            kind: edgeKindFor(parsed),
+        };
+        return {
+            source: parsed,
+            fromFile: file.filePath,
+            fromScope: file.moduleScope,
+            targetFile: tf,
+            base,
+            finalized: isFileLevelTerminal ? base : null,
+        };
+    });
 }
 function edgeKindFor(parsed) {
     if (parsed.kind === 'wildcard')
@@ -541,11 +548,59 @@ function deriveSimpleName(def) {
     return dot === -1 ? q : q.slice(dot + 1);
 }
 function findExportByName(defs, name) {
+    // GENERIC RULE (applies to every language using this finalize
+    // algorithm): when MULTIPLE `SymbolDefinition`s share the same simple
+    // name in `localDefs`, prefer callable / type-like defs over plain
+    // value defs (`Variable`, `Property`, …). The CALLER side of an
+    // import almost always wants the callable, not a value shadow that
+    // happens to share the name — and without a deterministic
+    // preference, capture order silently decides which def the import
+    // binds to.
+    //
+    // The single-def case is unchanged: when only one def has the name,
+    // it's returned regardless of its type (the `fallback` path below).
+    //
+    // TypeScript is the first known language where this matters in
+    // practice: `const fn = () => {}` emits BOTH a `Function` def (from
+    // `@declaration.function` on the inner arrow) AND a `Variable` def
+    // (from the generic `@declaration.variable` pattern matching the
+    // wrapping `lexical_declaration`), and consumers of `import { fn }`
+    // need to bind to the callable. Other migrated languages don't
+    // currently produce dual emits of this shape, so the rule is a no-op
+    // for them today; future languages get the same correctness
+    // guarantee for free if they ever do.
+    //
+    // See `gitnexus/test/integration/resolvers/typescript-hof-callbacks.test.ts`
+    // for the cross-file regression this rule prevents.
+    let fallback;
     for (const d of defs) {
-        if (deriveSimpleName(d) === name)
+        if (deriveSimpleName(d) !== name)
+            continue;
+        if (isCallableOrTypeLike(d.type))
             return d;
+        if (fallback === undefined)
+            fallback = d;
     }
-    return undefined;
+    return fallback;
+}
+const CALLABLE_OR_TYPE_LIKE = new Set([
+    'Function',
+    'Method',
+    'Constructor',
+    'Class',
+    'Interface',
+    'Enum',
+    'Struct',
+    'Record',
+    'Trait',
+    'Namespace',
+    'Module',
+    'TypeAlias',
+    'Type',
+    'Typedef',
+]);
+function isCallableOrTypeLike(type) {
+    return CALLABLE_OR_TYPE_LIKE.has(type);
 }
 function countEdgesWithin(edgeIndex, files) {
     let n = 0;

package/dist/_shared/scope-resolution/finalize-algorithm.js.map

@@ -1 +1 @@
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package/dist/_shared/scope-resolution/scope-tree.d.ts

@@ -25,7 +25,7 @@
  * Immutable surface: `byId` is a `ReadonlyMap`; children arrays are
  * `Object.freeze`d; miss lookups return a shared frozen empty array.
  */
-import type { Scope, ScopeId, ScopeLookup } from './types.js';
+import type { Scope, ScopeId, ScopeLookup, Range } from './types.js';
 export interface ScopeTree extends ScopeLookup {
     readonly size: number;
     readonly byId: ReadonlyMap<ScopeId, Scope>;
@@ -58,4 +58,26 @@ export declare class ScopeTreeInvariantError extends Error {
  * consumers to handle, so fail-fast is the correct posture.
  */
 export declare function buildScopeTree(scopes: readonly Scope[]): ScopeTree;
+/**
+ * Whether `outer` (kind `outerKind`) is a valid parent for `inner` (kind
+ * `innerKind`).
+ *
+ * Strict containment is the general rule. The single carve-out is the
+ * `Module`/non-`Module` pair whose ranges are exactly equal — this happens
+ * naturally when tree-sitter reports identical byte spans for the
+ * `compilation_unit` (or equivalent file-root construct) and the file's
+ * single top-level scope. Common shape: a C# file consisting of nothing
+ * but `namespace X { ... }` with no leading or trailing trivia outside the
+ * namespace's `{}` body — `compilation_unit` and `namespace_declaration`
+ * both span exactly the same byte range. The `Module` is the universal
+ * outer of any file-level scope by language semantics, so coincident
+ * ranges should not break the parent chain.
+ *
+ * The carve-out is direction-asymmetric: only `Module`-as-outer parents a
+ * same-range non-`Module`, never the reverse. This preserves the
+ * acyclicity buildScopeTree relies on, and matches the corresponding
+ * helper in `scope-extractor.ts` so `pass1BuildScopes` and the validator
+ * agree on what a well-formed parent edge looks like.
+ */
+export declare function canParentScope(outer: Range, inner: Range, outerKind: Scope['kind'], innerKind: Scope['kind']): boolean;
 //# sourceMappingURL=scope-tree.d.ts.map

package/dist/_shared/scope-resolution/scope-tree.d.ts.map

@@ -1 +1 @@
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package/dist/_shared/scope-resolution/scope-tree.js

@@ -72,8 +72,8 @@ export function buildScopeTree(scopes) {
         if (parent.filePath !== scope.filePath) {
             throw new ScopeTreeInvariantError('parent-must-share-filepath', `Scope '${scope.id}' (${scope.filePath}) has parent '${parent.id}' in a different file (${parent.filePath}). Parent/child scopes must share filePath.`);
         }
-        if (!rangeStrictlyContains(parent.range, scope.range)) {
-            throw new ScopeTreeInvariantError('parent-must-contain-child', `Parent scope '${parent.id}' at ${formatRange(parent.range)} does not strictly contain child '${scope.id}' at ${formatRange(scope.range)}.`);
+        if (!canParentScope(parent.range, scope.range, parent.kind, scope.kind)) {
+            throw new ScopeTreeInvariantError('parent-must-contain-child', `Parent scope '${parent.id}' at ${formatRange(parent.range)} does not contain child '${scope.id}' at ${formatRange(scope.range)} (allowed: strict containment, or equal-range Module-as-parent).`);
         }
         let bucket = childrenById.get(parent.id);
         if (bucket === undefined) {
@@ -164,6 +164,40 @@ function rangeStrictlyContains(outer, inner) {
         (outer.endLine === inner.endLine && outer.endCol >= inner.endCol);
     return outerStartsAtOrBefore && outerEndsAtOrAfter;
 }
+function rangesEqual(a, b) {
+    return (a.startLine === b.startLine &&
+        a.startCol === b.startCol &&
+        a.endLine === b.endLine &&
+        a.endCol === b.endCol);
+}
+/**
+ * Whether `outer` (kind `outerKind`) is a valid parent for `inner` (kind
+ * `innerKind`).
+ *
+ * Strict containment is the general rule. The single carve-out is the
+ * `Module`/non-`Module` pair whose ranges are exactly equal — this happens
+ * naturally when tree-sitter reports identical byte spans for the
+ * `compilation_unit` (or equivalent file-root construct) and the file's
+ * single top-level scope. Common shape: a C# file consisting of nothing
+ * but `namespace X { ... }` with no leading or trailing trivia outside the
+ * namespace's `{}` body — `compilation_unit` and `namespace_declaration`
+ * both span exactly the same byte range. The `Module` is the universal
+ * outer of any file-level scope by language semantics, so coincident
+ * ranges should not break the parent chain.
+ *
+ * The carve-out is direction-asymmetric: only `Module`-as-outer parents a
+ * same-range non-`Module`, never the reverse. This preserves the
+ * acyclicity buildScopeTree relies on, and matches the corresponding
+ * helper in `scope-extractor.ts` so `pass1BuildScopes` and the validator
+ * agree on what a well-formed parent edge looks like.
+ */
+export function canParentScope(outer, inner, outerKind, innerKind) {
+    if (rangeStrictlyContains(outer, inner))
+        return true;
+    if (outerKind === 'Module' && innerKind !== 'Module' && rangesEqual(outer, inner))
+        return true;
+    return false;
+}
 /**
  * Two ranges overlap when neither finishes before the other begins. Ranges
  * that merely touch at a single boundary point (`a.end === b.start`) do

package/dist/_shared/scope-resolution/scope-tree.js.map

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package/dist/cli/analyze.d.ts

@@ -45,5 +45,11 @@ export interface AnalyzeOptions {
      * `GITNEXUS_MAX_FILE_SIZE` for the rest of the pipeline.
      */
     maxFileSize?: string;
+    /** Override worker sub-batch idle timeout in seconds. */
+    workerTimeout?: string;
+    embeddingThreads?: string;
+    embeddingBatchSize?: string;
+    embeddingSubBatchSize?: string;
+    embeddingDevice?: string;
 }
 export declare const analyzeCommand: (inputPath?: string, options?: AnalyzeOptions) => Promise<void>;