gitnexus 1.6.3-rc.5 → 1.6.3-rc.51

package/README.md

@@ -155,6 +155,7 @@ gitnexus analyze --force         # Force full re-index
 gitnexus analyze --embeddings    # Enable embedding generation (slower, better search)
 gitnexus analyze --skip-agents-md  # Preserve custom AGENTS.md/CLAUDE.md gitnexus section edits
 gitnexus analyze --verbose       # Log skipped files when parsers are unavailable
+gitnexus analyze --max-file-size 1024  # Skip files larger than N KB (default: 512, cap: 32768)
 gitnexus mcp                     # Start MCP server (stdio) — serves all indexed repos
 gitnexus serve                   # Start local HTTP server (multi-repo) for web UI
 gitnexus index                   # Register an existing .gitnexus/ folder into the global registry
@@ -166,11 +167,11 @@ gitnexus wiki [path]             # Generate LLM-powered docs from knowledge grap
 gitnexus wiki --model <model>    # Wiki with custom LLM model (default: gpt-4o-mini)
 
 # Repository groups (multi-repo / monorepo service tracking)
-gitnexus group create <name>     # Create a repository group
-gitnexus group add <name> <repo> # Add a repo to a group
-gitnexus group remove <name> <repo> # Remove a repo from a group
-gitnexus group list [name]       # List groups, or show one group's config
-gitnexus group sync <name>       # Extract contracts and match across repos/services
+gitnexus group create <name>                                   # Create a repository group
+gitnexus group add <group> <groupPath> <registryName>          # Add a repo to a group. <groupPath> is a hierarchy path (e.g. hr/hiring/backend); <registryName> is the repo's name from the registry (see `gitnexus list`)
+gitnexus group remove <group> <groupPath>                      # Remove a repo from a group by its hierarchy path
+gitnexus group list [name]                                     # List groups, or show one group's config
+gitnexus group sync <name>                                     # Extract contracts and match across repos/services
 gitnexus group contracts <name>  # Inspect extracted contracts and cross-links
 gitnexus group query <name> <q>  # Search execution flows across all repos in a group
 gitnexus group status <name>     # Check staleness of repos in a group
@@ -307,6 +308,21 @@ echo "vendor/" >> .gitnexusignore
 echo "dist/" >> .gitnexusignore
 ```
 
+### Large files are being skipped
+
+By default the walker skips files larger than **512 KB** (see log line `Skipped N large files (>512KB)`). Raise the threshold via either the CLI flag or the environment variable — both accept a value in **KB**:
+
+```bash
+# CLI flag (takes precedence over the env var)
+npx gitnexus analyze --max-file-size 2048     # skip only files > 2 MB
+
+# Environment variable (persists across commands)
+export GITNEXUS_MAX_FILE_SIZE=2048
+npx gitnexus analyze
+```
+
+Values above **32768 KB (32 MB)** are clamped to the tree-sitter parser ceiling; invalid values fall back to the 512 KB default with a one-time warning. When an override is active, `analyze` prints the effective threshold in its startup banner (e.g. `GITNEXUS_MAX_FILE_SIZE: effective threshold 2048KB (default 512KB)`).
+
 ## Privacy
 
 - All processing happens locally on your machine

package/dist/_shared/graph/types.d.ts

@@ -61,5 +61,21 @@ export interface GraphRelationship {
     confidence: number;
     reason: string;
     step?: number;
+    /**
+     * Per-signal evidence trace for edges emitted by the scope-based
+     * resolution pipeline (RFC #909 Ring 2 PKG #925). Populated by
+     * `emit-references.ts` when draining `ReferenceIndex` into the graph
+     * so downstream query / audit tools can inspect *why* a given edge
+     * was emitted with its confidence value.
+     *
+     * Optional and additive — every existing edge emitter ignores this
+     * field, and every existing query continues to work whether or not
+     * an edge carries it.
+     */
+    evidence?: readonly {
+        readonly kind: string;
+        readonly weight: number;
+        readonly note?: string;
+    }[];
 }
 //# sourceMappingURL=types.d.ts.map

package/dist/_shared/graph/types.d.ts.map

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package/dist/_shared/index.d.ts

@@ -6,7 +6,7 @@ export { getLanguageFromFilename, getSyntaxLanguageFromFilename } from './langua
 export type { MroStrategy } from './mro-strategy.js';
 export type { PipelinePhase, PipelineProgress } from './pipeline.js';
 export type { SymbolDefinition } from './scope-resolution/symbol-definition.js';
-export type { ScopeId, DefId, ScopeKind, Range, Capture, CaptureMatch, BindingRef, ImportEdge, TypeRef, Scope, ResolutionEvidence, Resolution, Reference, ReferenceIndex, LookupParams, RegistryContributor, ParsedImport, ParsedTypeBinding, WorkspaceIndex, ScopeTree, Callsite, } from './scope-resolution/types.js';
+export type { ScopeId, DefId, ScopeKind, Range, Capture, CaptureMatch, BindingRef, ImportEdge, TypeRef, Scope, ResolutionEvidence, Resolution, Reference, ReferenceIndex, LookupParams, RegistryContributor, ParsedImport, ParsedTypeBinding, WorkspaceIndex, Callsite, ScopeLookup, } from './scope-resolution/types.js';
 export { EvidenceWeights, typeBindingWeightAtDepth } from './scope-resolution/evidence-weights.js';
 export { ORIGIN_PRIORITY } from './scope-resolution/origin-priority.js';
 export type { OriginForTieBreak } from './scope-resolution/origin-priority.js';
@@ -18,6 +18,36 @@ export { buildModuleScopeIndex } from './scope-resolution/module-scope-index.js'
 export type { ModuleScopeIndex, ModuleScopeEntry } from './scope-resolution/module-scope-index.js';
 export { buildQualifiedNameIndex } from './scope-resolution/qualified-name-index.js';
 export type { QualifiedNameIndex } from './scope-resolution/qualified-name-index.js';
+export { resolveTypeRef } from './scope-resolution/resolve-type-ref.js';
+export type { ResolveTypeRefContext } from './scope-resolution/resolve-type-ref.js';
+export type { ParsedFile } from './scope-resolution/parsed-file.js';
+export type { ReferenceSite, ReferenceKind, CallForm } from './scope-resolution/reference-site.js';
+export { buildMethodDispatchIndex } from './scope-resolution/method-dispatch-index.js';
+export type { MethodDispatchIndex, MethodDispatchInput, } from './scope-resolution/method-dispatch-index.js';
+export { finalize } from './scope-resolution/finalize-algorithm.js';
+export type { FinalizeInput, FinalizeFile, FinalizeHooks, FinalizeOutput, FinalizedScc, FinalizeStats, } from './scope-resolution/finalize-algorithm.js';
+export { buildClassRegistry } from './scope-resolution/registries/class-registry.js';
+export type { ClassRegistry } from './scope-resolution/registries/class-registry.js';
+export { buildMethodRegistry } from './scope-resolution/registries/method-registry.js';
+export type { MethodRegistry, MethodLookupOptions, } from './scope-resolution/registries/method-registry.js';
+export { buildFieldRegistry } from './scope-resolution/registries/field-registry.js';
+export type { FieldRegistry, FieldLookupOptions, } from './scope-resolution/registries/field-registry.js';
+export { lookupCore } from './scope-resolution/registries/lookup-core.js';
+export type { CoreLookupParams } from './scope-resolution/registries/lookup-core.js';
+export { lookupQualified } from './scope-resolution/registries/lookup-qualified.js';
+export type { LookupQualifiedParams } from './scope-resolution/registries/lookup-qualified.js';
+export { composeEvidence, confidenceFromEvidence } from './scope-resolution/registries/evidence.js';
+export type { RawSignals } from './scope-resolution/registries/evidence.js';
+export { compareByConfidenceWithTiebreaks, CONFIDENCE_EPSILON, } from './scope-resolution/registries/tie-breaks.js';
+export type { TieBreakKey } from './scope-resolution/registries/tie-breaks.js';
+export { CLASS_KINDS, METHOD_KINDS, FIELD_KINDS } from './scope-resolution/registries/context.js';
+export type { RegistryContext, RegistryProviders, OwnerScopedContributor, ArityVerdict, } from './scope-resolution/registries/context.js';
+export { makeScopeId, clearScopeIdInternPool } from './scope-resolution/scope-id.js';
+export type { ScopeIdInput } from './scope-resolution/scope-id.js';
+export { buildScopeTree, ScopeTreeInvariantError } from './scope-resolution/scope-tree.js';
+export type { ScopeTree } from './scope-resolution/scope-tree.js';
+export { buildPositionIndex } from './scope-resolution/position-index.js';
+export type { PositionIndex } from './scope-resolution/position-index.js';
 export { diffResolutions } from './scope-resolution/shadow/diff.js';
 export type { ShadowAgreement, ShadowCallsite, ShadowDiff, } from './scope-resolution/shadow/diff.js';
 export { aggregateDiffs } from './scope-resolution/shadow/aggregate.js';

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package/dist/_shared/index.js

@@ -12,6 +12,27 @@ export { LanguageClassifications, isProductionLanguage, } from './scope-resoluti
 export { buildDefIndex } from './scope-resolution/def-index.js';
 export { buildModuleScopeIndex } from './scope-resolution/module-scope-index.js';
 export { buildQualifiedNameIndex } from './scope-resolution/qualified-name-index.js';
+// Strict type-reference resolver (RFC §4.6; Ring 2 SHARED #916)
+// `ScopeLookup` is defined in `./scope-resolution/types.js` and exported
+// from the type-export block above — not from this module.
+export { resolveTypeRef } from './scope-resolution/resolve-type-ref.js';
+// Method-dispatch materialized view over HeritageMap (RFC §3.1; Ring 2 SHARED #914)
+export { buildMethodDispatchIndex } from './scope-resolution/method-dispatch-index.js';
+// SCC-aware cross-file finalize (RFC §3.2 Phase 2; Ring 2 SHARED #915)
+export { finalize } from './scope-resolution/finalize-algorithm.js';
+// Scope-aware registries + 7-step lookup (RFC §4; Ring 2 SHARED #917)
+export { buildClassRegistry } from './scope-resolution/registries/class-registry.js';
+export { buildMethodRegistry } from './scope-resolution/registries/method-registry.js';
+export { buildFieldRegistry } from './scope-resolution/registries/field-registry.js';
+export { lookupCore } from './scope-resolution/registries/lookup-core.js';
+export { lookupQualified } from './scope-resolution/registries/lookup-qualified.js';
+export { composeEvidence, confidenceFromEvidence } from './scope-resolution/registries/evidence.js';
+export { compareByConfidenceWithTiebreaks, CONFIDENCE_EPSILON, } from './scope-resolution/registries/tie-breaks.js';
+export { CLASS_KINDS, METHOD_KINDS, FIELD_KINDS } from './scope-resolution/registries/context.js';
+// Scope tree spine + position lookup (RFC §2.2 + §3.1; Ring 2 SHARED #912)
+export { makeScopeId, clearScopeIdInternPool } from './scope-resolution/scope-id.js';
+export { buildScopeTree, ScopeTreeInvariantError } from './scope-resolution/scope-tree.js';
+export { buildPositionIndex } from './scope-resolution/position-index.js';
 // Shadow-mode diff + aggregation (RFC §6.3; Ring 2 SHARED #918)
 export { diffResolutions } from './scope-resolution/shadow/diff.js';
 export { aggregateDiffs } from './scope-resolution/shadow/aggregate.js';

package/dist/_shared/index.js.map

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package/dist/_shared/scope-resolution/def-index.js

@@ -31,10 +31,10 @@ export function buildDefIndex(defs) {
             continue; // first-write-wins
         byId.set(def.nodeId, def);
     }
-    return freezeIndex(byId);
+    return wrapIndex(byId);
 }
 // ─── Internal ───────────────────────────────────────────────────────────────
-function freezeIndex(byId) {
+function wrapIndex(byId) {
     return {
         byId,
         get size() {

package/dist/_shared/scope-resolution/def-index.js.map

@@ -1 +1 @@
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package/dist/_shared/scope-resolution/finalize-algorithm.d.ts

@@ -0,0 +1,139 @@
+/**
+ * `finalize` — cross-file finalize algorithm for the SemanticModel
+ * (RFC §3.2 Phase 2; Ring 2 SHARED #915).
+ *
+ * Pure logic that takes per-file parse output (`ParsedImport[]` +
+ * `SymbolDefinition[]`) and returns:
+ *
+ *   - Linked `ImportEdge[]` per module scope, with `targetModuleScope` and
+ *     `targetDefId` filled where resolvable; edges that could not be
+ *     resolved within the hard fixpoint cap are marked
+ *     `linkStatus: 'unresolved'`.
+ *   - Materialized `bindings` per module scope — local defs merged with
+ *     imported / wildcard-expanded / re-exported names via the provider's
+ *     `mergeBindings` precedence.
+ *   - The SCC condensation of the import graph, exposed so disjoint SCCs
+ *     can be processed in parallel by callers that want that.
+ *
+ * The algorithm is **SCC-aware**: it runs Tarjan SCC over the file-level
+ * import graph, processes SCCs in reverse-topological order (leaves
+ * first), and within each SCC runs a bounded fixpoint link pass capped at
+ * `N = |edges in SCC|`. Cyclic imports finalize without hanging; malformed
+ * inputs are bounded by the cap.
+ *
+ * **No language-specific logic.** Target resolution, wildcard expansion,
+ * and binding precedence all go through caller-supplied hooks
+ * (`resolveImportTarget`, `expandsWildcardTo`, `mergeBindings`) that
+ * match the LanguageProvider surface from #911.
+ *
+ * **Dynamic imports rule.** `kind === 'dynamic-unresolved'` passes through
+ * as an `ImportEdge { kind: 'dynamic-unresolved', targetFile: null }`
+ * with no `BindingRef`. They are parse-time signals, not linkable targets.
+ */
+import type { SymbolDefinition } from './symbol-definition.js';
+import type { BindingRef, ImportEdge, ParsedImport, ScopeId, WorkspaceIndex } from './types.js';
+/** Per-file input for the finalize pass. */
+export interface FinalizeFile {
+    readonly filePath: string;
+    /** The module scope id for this file; owns the finalized imports + bindings. */
+    readonly moduleScope: ScopeId;
+    readonly parsedImports: readonly ParsedImport[];
+    /**
+     * Defs exported from this file — the "what other files can import by name"
+     * surface. Typically those with `isExported: true` (the module's own
+     * declarations) plus, for multi-hop re-export chains, the re-exported
+     * names the parser chose to surface here.
+     *
+     * **Multi-hop re-export contract.** `finalize` resolves an edge
+     * `A → B (importedName: 'X')` by looking up `X` in `B.localDefs`. If B
+     * only has `export { X } from './C'` and the parser *does not* include
+     * `X` in `B.localDefs`, A's edge hits the fixpoint cap and is marked
+     * `linkStatus: 'unresolved'`. The fixpoint does NOT mutate `localDefs`
+     * across iterations — it is static input.
+     *
+     * Parsers that want multi-hop re-export chains to settle end-to-end must
+     * include re-exported names in the intermediate file's `localDefs` (with
+     * the original `DefId` of the source symbol). This keeps the algorithm
+     * O(1) per lookup and avoids graph-crawl during finalize.
+     */
+    readonly localDefs: readonly SymbolDefinition[];
+}
+/** Input to `finalize`. */
+export interface FinalizeInput {
+    readonly files: readonly FinalizeFile[];
+    /** Opaque workspace context forwarded to provider hooks. */
+    readonly workspaceIndex: WorkspaceIndex;
+}
+/**
+ * Provider-supplied hooks. Mirror the optional LanguageProvider scope-
+ * resolution hooks declared in #911; `finalize` calls them pure-ly and
+ * expects pure answers.
+ */
+export interface FinalizeHooks {
+    /**
+     * Resolve a raw import target to the concrete file path that owns it.
+     * Return `null` when no target file is resolvable (e.g., `np.foo` when
+     * `numpy` is external to the workspace).
+     */
+    resolveImportTarget(targetRaw: string, fromFile: string, workspaceIndex: WorkspaceIndex): string | null;
+    /**
+     * For a wildcard `import * from M`, return the names visible in the
+     * exporting module scope `M`. The finalize pass looks each name up in
+     * `M`'s local defs to produce a concrete `BindingRef`; names with no
+     * matching export are dropped.
+     */
+    expandsWildcardTo(targetModuleScope: ScopeId, workspaceIndex: WorkspaceIndex): readonly string[];
+    /**
+     * Merge `incoming` bindings into `existing` for a given name. Called
+     * once per name at each scope. Typical rules:
+     *   - Python: local > imported > wildcard (last-write-wins within tier).
+     *   - Rust: explicit `use` > glob; `pub use` overrides.
+     * Return value replaces the bucket entirely — no implicit append.
+     */
+    mergeBindings(existing: readonly BindingRef[], incoming: readonly BindingRef[], scope: ScopeId): readonly BindingRef[];
+}
+/** One SCC in the file-level import graph. */
+export interface FinalizedScc {
+    readonly files: readonly string[];
+    /** True iff this SCC has ≥ 2 files OR a single file that self-imports. */
+    readonly isCycle: boolean;
+}
+/**
+ * Counters reported by `finalize`.
+ *
+ * **Counting granularity** — all edge counters are **per-`ParsedImport`**,
+ * not per-materialized-`ImportEdge`. A single `wildcard` ParsedImport that
+ * expands to N exports counts as one linked edge in these stats; the
+ * materialized output (`FinalizeOutput.imports`) will have N edges for
+ * that input. `dynamic-unresolved` ParsedImports count as linked (they
+ * pass through with no `linkStatus`), so `linkedEdges` ≠ "has a
+ * BindingRef" — use the `bindings` map for that.
+ *
+ * In other words: `totalEdges === input.parsedImports.length` summed
+ * across files, and `linkedEdges + unresolvedEdges === totalEdges`.
+ */
+export interface FinalizeStats {
+    readonly totalFiles: number;
+    /** Total `ParsedImport` records seen across all files. */
+    readonly totalEdges: number;
+    /**
+     * `ParsedImport`s whose finalized edge does NOT carry
+     * `linkStatus: 'unresolved'`. Includes `dynamic-unresolved` pass-throughs.
+     */
+    readonly linkedEdges: number;
+    /** `ParsedImport`s whose finalized edge carries `linkStatus: 'unresolved'`. */
+    readonly unresolvedEdges: number;
+    readonly sccCount: number;
+    readonly largestSccSize: number;
+}
+export interface FinalizeOutput {
+    /** Linked `ImportEdge[]` per module scope, in original input order. */
+    readonly imports: ReadonlyMap<ScopeId, readonly ImportEdge[]>;
+    /** Materialized bindings per module scope. */
+    readonly bindings: ReadonlyMap<ScopeId, ReadonlyMap<string, readonly BindingRef[]>>;
+    /** SCCs in reverse-topological order (leaves first). */
+    readonly sccs: readonly FinalizedScc[];
+    readonly stats: FinalizeStats;
+}
+export declare function finalize(input: FinalizeInput, hooks: FinalizeHooks): FinalizeOutput;
+//# sourceMappingURL=finalize-algorithm.d.ts.map

package/dist/_shared/scope-resolution/finalize-algorithm.d.ts.map

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