gitnexus 1.6.3-rc.35 → 1.6.3-rc.37

package/dist/cli/ai-context.js

@@ -13,6 +13,32 @@ const __filename = fileURLToPath(import.meta.url);
 const __dirname = path.dirname(__filename);
 const GITNEXUS_START_MARKER = '<!-- gitnexus:start -->';
 const GITNEXUS_END_MARKER = '<!-- gitnexus:end -->';
+/**
+ * Find the index of a section marker that occupies its own line.
+ * Unlike `indexOf`, this rejects inline prose references like
+ * `` See the `<!-- gitnexus:start -->` block `` that appear
+ * mid-sentence (#1041). A marker counts as section-position only when:
+ *   - preceded by newline or start-of-file, AND
+ *   - followed by newline, `\r` (CRLF files), or end-of-file.
+ * The generator always emits each marker alone on its line, so this
+ * matches every legitimate section and none of the inline mentions.
+ *
+ * `startFrom` lets the end-marker lookup start after the already-found
+ * start marker, avoiding a scan from 0 and guaranteeing we never pick
+ * up an end marker that appears earlier in the file than the start.
+ */
+function findSectionMarkerIndex(content, marker, startFrom = 0) {
+    let idx = content.indexOf(marker, startFrom);
+    while (idx !== -1) {
+        const atLineStart = idx === 0 || content[idx - 1] === '\n';
+        const endPos = idx + marker.length;
+        const atLineEnd = endPos === content.length || content[endPos] === '\n' || content[endPos] === '\r';
+        if (atLineStart && atLineEnd)
+            return idx;
+        idx = content.indexOf(marker, idx + 1);
+    }
+    return -1;
+}
 /**
  * Generate the full GitNexus context content.
  *
@@ -123,9 +149,14 @@ async function upsertGitNexusSection(filePath, content) {
         return 'created';
     }
     const existingContent = await fs.readFile(filePath, 'utf-8');
-    // Check if GitNexus section already exists
-    const startIdx = existingContent.indexOf(GITNEXUS_START_MARKER);
-    const endIdx = existingContent.indexOf(GITNEXUS_END_MARKER);
+    // Check if GitNexus section already exists. Matching is restricted
+    // to markers that occupy their own line so that inline prose
+    // references (e.g. `` See the `<!-- gitnexus:start -->` block `` in
+    // the shipped CLAUDE.md) are NOT treated as section delimiters
+    // (#1041). The end-marker scan starts after the start-marker so it
+    // can never pick up an earlier end in the file.
+    const startIdx = findSectionMarkerIndex(existingContent, GITNEXUS_START_MARKER);
+    const endIdx = findSectionMarkerIndex(existingContent, GITNEXUS_END_MARKER, startIdx === -1 ? 0 : startIdx);
     if (startIdx !== -1 && endIdx !== -1 && endIdx > startIdx) {
         // Replace existing section
         const before = existingContent.substring(0, startIdx);

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "gitnexus",
-  "version": "1.6.3-rc.35",
+  "version": "1.6.3-rc.37",
   "description": "Graph-powered code intelligence for AI agents. Index any codebase, query via MCP or CLI.",
   "author": "Abhigyan Patwari",
   "license": "PolyForm-Noncommercial-1.0.0",