gitnexus 1.6.10-rc.21 → 1.6.10-rc.211

package/README.md

@@ -165,13 +165,20 @@ The result is a **LadybugDB graph database** stored locally in `.gitnexus/` with
 
 ### Experimental community detection engine
 
-Community detection uses the bundled Graphology Leiden implementation by default. To test the #2337 Icebug migration path without changing default analyze behavior, set:
+> **Experimental — not supported for production indexes.** The Icebug engine is a research path for #2337. It carries no stability guarantee, may change or be removed without a major version, and partitions differently from the default, so switching engines changes community IDs and any generated context keyed on them. Reindex with `graphology` before relying on the output.
+
+Community detection uses the bundled Graphology Leiden implementation by default. To try the #2337 Icebug path without changing default analyze behavior, install the optional native package alongside GitNexus and set the engine:
 
 ```bash
+npm i @ladybugmem/icebug
 GITNEXUS_COMMUNITY_ENGINE=icebug npx gitnexus analyze
 ```
 
-Supported values are `graphology`, `icebug`, and `auto`. The Icebug path is an experimental probe: GitNexus does not bundle an Icebug native package yet, and if a separately resolvable module is unavailable or its API does not match the expected `Graph.fromCSR` / `ParallelLeidenView` shape, analyze falls back to Graphology and reports the fallback in progress output. Today `auto` is behaviorally identical to `icebug`: both try Icebug and fall back to Graphology, while `graphology` skips the Icebug probe entirely.
+Supported values are `graphology`, `icebug`, and `auto`. Today `auto` is behaviorally identical to `icebug`: both try Icebug and fall back to Graphology, while `graphology` skips Icebug entirely.
+
+Icebug is **not** a declared dependency — its prebuilds link against system Arrow 24 (`libarrow.so.2400`), OpenMP, and glibc ≥ 2.38, none of which GitNexus can assume. Analyze falls back to Graphology and reports the reason in progress output when the module is missing, fails to load, or predates the `setNumberOfThreads` / `setSeed` controls that reproducible community IDs require (present at [icebug-nodejs](https://github.com/Ladybug-Memory/icebug-nodejs) HEAD, absent from the published 12.8.0 tarball — so the fallback is what you will see today). The engine is pinned to `threads: 1`, `randomize: false` for determinism.
+
+Note that the bundled Graphology path is no longer the slow option it once was: #2337 removed an accidental O(communities × N) copy in the vendored Leiden. On a synthetic 200k-node / 800k-edge benchmark graph it went from exceeding the 60s timeout to finishing in ~15s. Real projections vary with their degree distribution, so treat that as a direction, not a guarantee.
 
 ## MCP Tools
 
@@ -233,7 +240,7 @@ gitnexus analyze --embeddings    # Enable embedding generation (slower, better s
 gitnexus embeddings install      # Fetch the optional local embedding stack on demand (--cuda, --force)
 gitnexus analyze --skills        # Generate repo-specific skill files from detected communities
 gitnexus analyze --skip-agents-md  # Preserve custom AGENTS.md/CLAUDE.md gitnexus section edits
-gitnexus analyze --skip-skills   # Skip installing .claude/skills/gitnexus/ skill files
+gitnexus analyze --skip-skills   # Skip installing standard .claude/skills/gitnexus-* skill files
 gitnexus analyze --skip-git      # Index folders that are not Git repositories
 gitnexus analyze --workers <n>   # Parse worker pool size (>=1; default: cores-1, capped at 16)
 gitnexus analyze --verbose       # Log skipped files when parsers are unavailable
@@ -249,6 +256,8 @@ gitnexus clean                   # Delete index for current repo
 gitnexus clean --all --force     # Delete all indexes
 gitnexus wiki [path]             # Generate LLM-powered docs from knowledge graph
 gitnexus wiki --model <model>    # Wiki with custom LLM model (default: minimax/minimax-m2.5)
+gitnexus wiki --base-url http://llama-box.local:8080/v1 --allow-insecure-connection llama-box.local
+                                  # Allow an exact LAN/self-hosted HTTP LLM host; env: GITNEXUS_ALLOW_INSECURE_CONNECTION
 gitnexus doctor                  # Show runtime platform capabilities and embedding configuration
 
 # Direct graph queries — the same tools the MCP server exposes, no MCP daemon needed
@@ -282,11 +291,50 @@ Set these env vars to use a remote OpenAI-compatible `/v1/embeddings` endpoint i
 export GITNEXUS_EMBEDDING_URL=http://your-server:8080/v1
 export GITNEXUS_EMBEDDING_MODEL=BAAI/bge-large-en-v1.5
 export GITNEXUS_EMBEDDING_DIMS=1024          # optional, default 384
+export GITNEXUS_EMBEDDING_REQUEST_DIMS=omit  # optional: omit "dimensions", or an integer to override it
 export GITNEXUS_EMBEDDING_API_KEY=your-key   # optional, default: "unused"
+export GITNEXUS_EMBEDDING_MAX_ATTEMPTS=3     # optional, total attempts (1-20)
+export GITNEXUS_EMBEDDING_RETRY_CAP_MS=5000  # optional, maximum retry delay
+export GITNEXUS_EMBEDDING_MIN_INTERVAL_MS=0  # optional, minimum request spacing
+export GITNEXUS_EMBEDDING_HTTP_TIMEOUT_MS=180000 # optional, per-request timeout (max 300000)
 gitnexus analyze . --embeddings
 ```
 
-Works with Infinity, vLLM, TEI, llama.cpp, Ollama, LM Studio, or OpenAI. When unset, local embeddings are used unchanged.
+`GITNEXUS_EMBEDDING_REQUEST_DIMS` controls only the `dimensions` field sent in
+the request body, independently of `GITNEXUS_EMBEDDING_DIMS` (which still
+validates the returned vector's length):
+
+- `omit` (or `none`, `off`, `false`, `0`) — do not send `dimensions` at all, for
+  strict backends that return the right vector size but reject the field.
+- a positive integer — send that value instead of `GITNEXUS_EMBEDDING_DIMS`.
+- unset — send `GITNEXUS_EMBEDDING_DIMS` (the previous behavior).
+
+Works with Infinity, vLLM, TEI, llama.cpp, Ollama, LM Studio, or OpenAI. Retry and pacing settings are provider-neutral; provider-specific limits should be supplied through configuration. When unset, local embeddings are used unchanged.
+
+## JVM Package Sibling Injection
+
+Java and Kotlin files in the same package receive implicit sibling class bindings
+to resolve same-package references. By default, GitNexus injects at most 200
+siblings per module scope, nearest first by path. Set
+`GITNEXUS_MAX_INJECTED_SIBLINGS=0` to remove that per-file limit; this can
+substantially increase indexing work for large packages.
+
+```bash
+export GITNEXUS_MAX_INJECTED_SIBLINGS=200
+gitnexus analyze .
+```
+
+When the limit truncates a file's sibling set, that file is marked
+visibility-incomplete: same-package references still resolve through the
+injected siblings, but wildcard-import attribution (used by the Spring
+bean/DI/config passes) is disabled for it rather than resolved against a
+partial view. Analyze logs a `sibling injection truncated` warning naming how
+many files were affected.
+
+Packages with more than 500 files are a separate, fixed limit: they are skipped
+entirely (logged as `skipping package with N files`) and every file in them is
+marked visibility-incomplete. `GITNEXUS_MAX_INJECTED_SIBLINGS` does not lift
+that skip — including at `0`.
 
 ## Multi-Repo Support
 
@@ -327,13 +375,23 @@ GitNexus ships with skill files that teach AI agents how to use the tools effect
 - **Refactoring** — Plan safe refactors using dependency mapping
 - **Guide** — GitNexus tool/resource/schema reference for the agent
 - **CLI** — Run analyze/status/clean/wiki commands on request
+- **PDG Query** — Statement-level control/data dependence queries (`--pdg` index)
+- **Taint Analysis** — Source→sink data-flow findings (`--pdg` index)
+- **Plan / Work / Review / LFG** — The engineering family: implementation-ready plans, gated plan execution, graph-backed change review with taint + expert lenses, and the end-to-end pipeline
 
-Installed automatically by both `gitnexus analyze` (per-repo) and `gitnexus setup` (global). Run `gitnexus analyze --skills` to additionally generate repo-specific skills for each detected functional area under `.claude/skills/generated/`.
+Installed automatically by both `gitnexus analyze` (per-repo) and `gitnexus setup` (global). Run `gitnexus analyze --skills` to additionally generate each detected functional area as a direct project skill under `.claude/skills/gitnexus-area-<name>/`.
 
 ## Requirements
 
 - Node.js >= 22
 - Git repository (uses git for commit tracking)
+- **Linux: glibc 2.34 or newer** (Ubuntu 22.04+, RHEL/Rocky/Alma 9+, Debian 12+, Fedora 35+). The
+  LadybugDB native binary ships as a prebuild against that floor, so on an older host it cannot
+  load and reinstalling does not help — see
+  [Linux: `GLIBC_2.34' not found`](#linux-glibc_234-not-found).
+- **Windows, for full-text search:** the Microsoft Visual C++ 2015-2022 Redistributable (x64) *and*
+  OpenSSL 3 (`libssl-3-x64.dll`, `libcrypto-3-x64.dll`) resolvable on `PATH` — see
+  [Windows: full-text search unavailable](#windows-full-text-search-unavailable).
 
 ## Release candidates
 
@@ -416,6 +474,50 @@ pnpm add -g --allow-build=@ladybugdb/core --allow-build=gitnexus --allow-build=t
 gitnexus serve
 ```
 
+### Linux: `GLIBC_2.34' not found`
+
+```
+LadybugDB native binary (lbugjs.node) exists but failed to load:
+  /lib64/libc.so.6: version `GLIBC_2.34' not found (required by .../lbugjs.node)
+```
+
+The LadybugDB addon ships as a prebuilt binary compiled against **glibc 2.34**. If your
+distribution is older (CentOS/RHEL 8 has 2.28, Ubuntu 20.04 has 2.31, Debian 11 has 2.31), the
+dynamic loader cannot resolve its symbols.
+
+**Reinstalling does not help** — every download delivers the same prebuilt binary. The fix is a
+newer C library:
+
+- Run GitNexus on a distribution with glibc 2.34 or newer — Ubuntu 22.04+, RHEL/Rocky/Alma 9+,
+  Debian 12+, Fedora 35+.
+- Or run it in the container image, which bundles a current glibc (see [Docker](#docker)).
+
+`gitnexus doctor` reports the required and detected glibc versions when this happens
+([#2672](https://github.com/abhigyanpatwari/GitNexus/issues/2672)).
+
+### Windows: full-text search unavailable
+
+`analyze` completes, but keyword search is degraded and `doctor` shows the FTS extension failing
+with Windows error 126 (`The specified module could not be found`). The extension needs two
+runtime dependencies Windows does not ship by default:
+
+1. **Microsoft Visual C++ 2015-2022 Redistributable (x64)** —
+   <https://aka.ms/vs/17/release/vc_redist.x64.exe>
+2. **OpenSSL 3** — `libssl-3-x64.dll` and `libcrypto-3-x64.dll`, resolvable on `PATH`
+
+The redistributable alone is **not** sufficient. If Git for Windows is installed you already have
+the OpenSSL DLLs — run `gitnexus` from **Git Bash**, or prepend the directory to `PATH` in the
+shell you use:
+
+```powershell
+$env:PATH = "C:\Program Files\Git\mingw64\bin;$env:PATH"
+gitnexus analyze --repair-fts
+```
+
+Without them the index is still built, but without search tables, so `query` returns empty keyword
+results until you re-run `gitnexus analyze --repair-fts` from a shell where the DLLs resolve
+([#2669](https://github.com/abhigyanpatwari/GitNexus/issues/2669)).
+
 ### Installation fails with native module errors
 
 Some optional language grammars (Dart, Proto, Swift, Kotlin) require native compilation. If they fail, GitNexus still works — those languages will be skipped. To skip them intentionally (no C++ toolchain needed), set `GITNEXUS_SKIP_OPTIONAL_GRAMMARS=1` before installing.
@@ -458,14 +560,17 @@ GitNexus uses optional DuckDB extensions for BM25 and vector search. The `gitnex
 
 Configure the behavior with these environment variables:
 
-| Variable                                     | Values                       | Default             | Effect                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  |
-| -------------------------------------------- | ---------------------------- | ------------------- | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
-| `GITNEXUS_LBUG_EXTENSION_INSTALL`            | `auto`, `load-only`, `never` | `auto`              | `auto` runs one bounded install if LOAD fails — a plain `INSTALL`, escalating to `FORCE INSTALL` only when the LOAD error shows the present extension file is broken. `load-only` only uses already-installed extensions (recommended for offline / firewalled environments). `never` skips optional extensions entirely.                                                                                                                                                                                                                                                                                                                                                                               |
-| `GITNEXUS_LBUG_EXTENSION_INSTALL_TIMEOUT_MS` | positive integer             | `15000`             | Wall-clock budget for the out-of-process extension-install child before it is killed.                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   |
-| `GITNEXUS_FTS_STEMMER`                       | supported LadybugDB stemmer  | `porter`            | Stemmer used when rebuilding BM25/FTS indexes. Use `none` for CJK-heavy repositories, or a language stemmer such as `german`, `french`, or `spanish` when that better matches repository comments and identifiers. Re-run `gitnexus analyze --repair-fts` after changing it.                                                                                                                                                                                                                                                                                                                                                                                                                            |
-| `GITNEXUS_FTS_CJK_SEGMENTATION`              | `none`, `bigram`             | `none`              | `bigram` inserts overlapping character-bigram boundaries into Chinese/Japanese Han-ideograph spans in `content`/`description` before FTS indexing, so LadybugDB's space-only tokenizer can see sub-phrase word boundaries. Scoped to CJK Unified Ideographs only — Japanese Hiragana/Katakana and Korean Hangul are not currently segmented. Unlike `GITNEXUS_FTS_STEMMER`, this rewrites stored text — enabling it on an already-indexed repo requires a full `gitnexus analyze --force`; neither `--repair-fts` nor a plain incremental `analyze` applies it to previously-indexed files. Set the same value wherever `analyze` and search-serving processes (CLI query, MCP server, web server) run. |
-| `GITNEXUS_COMMUNITY_ENGINE`                  | `graphology`, `icebug`, `auto` | `graphology`        | Community-detection engine used during analyze. `graphology` uses the bundled default path. `icebug` and `auto` currently behave identically: both try the experimental Icebug CSR path and fall back to Graphology if the optional native module is unavailable or incompatible.                                                                                                                                                                                                                                                                                                                                                         |
-| `GITNEXUS_WAL_CHECKPOINT_THRESHOLD`          | integer `>= -1`              | `67108864` (64 MiB) | LadybugDB WAL auto-checkpoint threshold during analyze (bytes). Auto-checkpoint remains enabled; `-1` keeps Ladybug's stock ~16 MiB. Larger thresholds reduce checkpoint frequency but increase the WAL size at rotation time — choose a smaller value on disk-constrained environments.                                                                                                                                                                                                                                                                                                                                                                                                                |
+| Variable                                     | Values                         | Default                | Effect                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        |
+| -------------------------------------------- | ------------------------------ | ---------------------- | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
+| `GITNEXUS_LBUG_EXTENSION_INSTALL`            | `auto`, `load-only`, `never`   | `auto`                 | `auto` runs one bounded install if LOAD fails — a plain `INSTALL`, escalating to `FORCE INSTALL` only when the LOAD error shows the present extension file is broken. `load-only` only uses already-installed extensions (recommended for offline / firewalled environments). `never` skips optional extensions entirely.                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     |
+| `GITNEXUS_LBUG_EXTENSION_INSTALL_TIMEOUT_MS` | positive integer               | `15000`                | Wall-clock budget for the out-of-process extension-install child before it is killed.                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         |
+| `GITNEXUS_FTS_STEMMER`                       | supported LadybugDB stemmer    | `porter`               | Stemmer used when rebuilding BM25/FTS indexes. Use `none` for CJK-heavy repositories, or a language stemmer such as `german`, `french`, or `spanish` when that better matches repository comments and identifiers. Re-run `gitnexus analyze --repair-fts` after changing it.                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  |
+| `GITNEXUS_FTS_CJK_SEGMENTATION`              | `none`, `bigram`               | `none`                 | `bigram` inserts overlapping character-bigram boundaries into Chinese/Japanese Han-ideograph spans in `content`/`description` before FTS indexing, so LadybugDB's space-only tokenizer can see sub-phrase word boundaries. Scoped to CJK Unified Ideographs only — Japanese Hiragana/Katakana and Korean Hangul are not currently segmented. Unlike `GITNEXUS_FTS_STEMMER`, this rewrites stored text — enabling it on an already-indexed repo requires a full `gitnexus analyze --force`; neither `--repair-fts` nor a plain incremental `analyze` applies it to previously-indexed files. Set the same value wherever `analyze` and search-serving processes (CLI query, MCP server, web server) run.                                                                                                                                       |
+| `GITNEXUS_STREAM_GRAPH_EMIT`                 | `0`, `1`                       | `1` (on)               | **On by default** on a full rebuild (`--force`); incremental runs ignore it. Holds structural relationships (CALLS, IMPORTS, ACCESSES, CONTAINS, ...) as CSV-on-disk plus compact in-memory columns instead of as objects in three overlapping indexes, cutting peak in-memory graph heap by ~1.4x at no measurable CPU cost (measured A/B on a synthetic 400k-node / 1.08M-edge graph: 819 MB -> 584 MB, iteration at parity, scaling verified linear from 100k to 800k nodes, with every edge still visible through the graph interface; no end-to-end measurement on a real repository yet). Nothing is traded away — community detection, process extraction, PDG taint summaries and the local-symbol pruner all read a complete relationship set and behave identically. Set to `0` only to bisect a suspected streaming-related fault. |
+| `GITNEXUS_COMMUNITY_ENGINE`                  | `graphology`, `icebug`, `auto` | `graphology`           | Community-detection engine used during analyze. `graphology` is the supported default. `icebug` and `auto` are **experimental** and currently behave identically: both try the optional `@ladybugmem/icebug` native Leiden over a CSR export and fall back to Graphology if it is not installed, cannot load, or lacks the deterministic thread/seed controls. Experimental engines partition differently, so community IDs are not comparable across engines.                                                                                                                                                                                                                                                                                                                                                                                |
+| `GITNEXUS_WAL_CHECKPOINT_THRESHOLD`          | integer `>= -1`                | `67108864` (64 MiB)    | LadybugDB WAL auto-checkpoint threshold during analyze (bytes). Auto-checkpoint remains enabled; `-1` keeps Ladybug's stock ~16 MiB. Larger thresholds reduce checkpoint frequency but increase the WAL size at rotation time — choose a smaller value on disk-constrained environments.                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      |
+| `GITNEXUS_LBUG_BUFFER_POOL_SIZE`             | integer `>= 0` (bytes)         | min(2 GiB, 80% RAM)    | LadybugDB buffer-pool ceiling for every GitNexus database (analyze, MCP server, serve, group bridges). Bounded so a long-lived `gitnexus mcp` process or a large incremental `analyze` cannot grow toward LadybugDB's native 80%-of-RAM default and OOM the host (#2557). `0` restores that native unbounded default; invalid values warn and fall back to the default. During `analyze` the pool is right-sized to the graph and, on non-4 KiB-page hosts (Apple Silicon 16 KiB, Ascend/aarch64 64 KiB), scaled by the page-size granule ratio up to min(2 GiB × pageSize/4 KiB, 80% RAM) (#2631); this env var overrides all of that as an absolute value.                                                                                                                                                                                  |
+| `GITNEXUS_LBUG_MAX_DB_SIZE`                  | positive integer (bytes)       | `17179869184` (16 GiB) | Upper bound for a single LadybugDB database file. This is an mmap/disk-address-space ceiling, not a memory limit — it does not constrain the buffer pool (use `GITNEXUS_LBUG_BUFFER_POOL_SIZE` for that). Raise it when indexing genuinely huge monorepos; invalid values silently fall back to the default.                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  |
 
 ```bash
 # Offline/airgapped: never reach the network for extensions
@@ -485,15 +590,46 @@ GITNEXUS_FTS_CJK_SEGMENTATION=bigram npx gitnexus analyze --force
 
 ### Analysis runs out of memory
 
+Memory management is automatic: `analyze` sizes its heap to the machine
+(always below physical RAM), caps each parse worker, and — rather than
+grinding into a GC death spiral or crash — stops early with a message telling
+you the one thing to do. Repeated
+`Replacement worker did not report ready within 5000ms` warnings on a large
+repository are part of the same picture: memory pressure starving healthy
+workers, not a worker bug (#2649).
+
+If analyze says the repository doesn't fit, do what the message says:
+
+- **The machine has more memory to give** (a `NODE_OPTIONS`
+  `--max-old-space-size` pin from your environment is holding analyze back):
+  re-run without the pin — no flags needed.
+- **The machine is the ceiling**: shrink the scope (exclude generated or
+  vendored directories, below) or use a machine with more RAM.
+
+Escape hatches (`GITNEXUS_MEMORY=off` to decline the autopilot,
+`GITNEXUS_WORKER_HEAP_MB` to size workers yourself) are listed in the
+environment-variable table below —
+most users never need them.
+
 For very large repositories:
 
 ```bash
 # Increase Node.js heap size
 NODE_OPTIONS="--max-old-space-size=16384" npx gitnexus analyze
 
-# Exclude large directories
+# Exclude large directories (this repo only)
 echo "vendor/" >> .gitnexusignore
 echo "dist/" >> .gitnexusignore
+
+# Exclude a directory across every repo you index, without touching each
+# repo's own .gitnexusignore or needing push/commit access to it. GitNexus
+# reads the same sources `git` itself does: core.excludesFile (all repos)
+# and $GIT_DIR/info/exclude (this repo only, untracked). A repo's own
+# .gitignore/.gitnexusignore can still override either with a `!pattern`
+# negation. Skip both entirely with GITNEXUS_NO_GLOBAL_IGNORE=1.
+git config --global core.excludesFile ~/.gitignore_global   # applies to every repo
+echo "docs/" >> ~/.gitignore_global
+echo "build/" >> .git/info/exclude                          # this repo only, untracked
 ```
 
 ### Large files are being skipped
@@ -528,15 +664,19 @@ For repositories with very large source files, `GITNEXUS_WORKER_SUB_BATCH_MAX_BY
 
 ### Worker pool resilience tuning
 
-Three env vars expose the pool's resilience layers (respawn budget, cumulative-timeout cap, circuit breaker). Defaults are tuned for typical repos; bump them when an analyze legitimately needs more retries, or lower them to fail-fast on a known-bad shape.
+Four env vars expose the pool's resilience layers (respawn budget, cumulative-timeout cap, circuit breaker, startup handshake). Defaults are tuned for typical repos; bump them when an analyze legitimately needs more retries, or lower them to fail-fast on a known-bad shape.
 
-| Variable                                        | Default                 | Effect                                                                                                                |
-| ----------------------------------------------- | ----------------------- | --------------------------------------------------------------------------------------------------------------------- |
-| `GITNEXUS_WORKER_MAX_RESPAWNS_PER_SLOT`         | `3`                     | Max replacement spawns per slot before the slot is dropped from the active rotation.                                  |
-| `GITNEXUS_WORKER_MAX_CUMULATIVE_TIMEOUT_MS`     | `5 × subBatchTimeoutMs` | Total retry wall-time budget per job before quarantining. Bounds exponentially-growing retry waits.                   |
-| `GITNEXUS_WORKER_CONSECUTIVE_FAILURE_THRESHOLD` | `max(3, poolSize)`      | Per-slot consecutive deaths before the pool's circuit breaker trips. After tripping, dispatches require a fresh pool. |
-| `GITNEXUS_WORKER_SHUTDOWN_DRAIN_MS`             | `30000`                 | Max wait at pool shutdown for a retired worker still inside native code — terminated at its next JS-safe point instead of mid-native-call, which would abort the process (`Napi::Error`, #2432). |
-| `GITNEXUS_CPP_CAPTURE_BUDGET_MS`                | `20000`                 | Per-file wall-clock budget for C++ capture extraction; on breach the file keeps partial captures with a warning (#2432). `0` expires immediately.           |
+| Variable                                        | Default                 | Effect                                                                                                                                                                                                                                                    |
+| ----------------------------------------------- | ----------------------- | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
+| `GITNEXUS_WORKER_MAX_RESPAWNS_PER_SLOT`         | `3`                     | Max replacement spawns per slot before the slot is dropped from the active rotation.                                                                                                                                                                      |
+| `GITNEXUS_WORKER_MAX_CUMULATIVE_TIMEOUT_MS`     | `5 × subBatchTimeoutMs` | Total retry wall-time budget per job before quarantining. Bounds exponentially-growing retry waits.                                                                                                                                                       |
+| `GITNEXUS_WORKER_CONSECUTIVE_FAILURE_THRESHOLD` | `max(3, poolSize)`      | Per-slot consecutive deaths before the pool's circuit breaker trips. After tripping, dispatches require a fresh pool.                                                                                                                                     |
+| `GITNEXUS_WORKER_SHUTDOWN_DRAIN_MS`             | `30000`                 | Max wait at pool shutdown for a retired worker still inside native code — terminated at its next JS-safe point instead of mid-native-call, which would abort the process (`Napi::Error`, #2432).                                                          |
+| `GITNEXUS_WORKER_READY_TIMEOUT_MS`              | `5000`                  | Startup budget for a parse worker to load its grammar bindings and report `{type:'ready'}`. Slots that miss it are treated as startup crashes. Raise it on a slow or heavily loaded host where a full pool cold-starting concurrently needs more than 5s. |
+| `GITNEXUS_MEMORY`                            | `off`                          | unset (autopilot on) | `off` declines GitNexus's memory autopilot: analyze will neither re-run itself with a RAM-aware heap cap nor abort the parse before V8 enters its ineffective-mark-compact death spiral. Use it when you want to drive memory manually; to simply pin a heap size, pass Node's own `--max-old-space-size`, which is already honoured as your decision. |
+| `GITNEXUS_WORKER_HEAP_MB`                       | `clamp(512, RAM/2/poolSize, 4096)` | Per-worker V8 old-generation heap cap (#2649). Bounds pool RSS on large repos; a worker exceeding it dies with a real heap error handled by quarantine/respawn.                                                                    |
+| `GITNEXUS_SERVER_ANALYZE_HEAP_MB`               | `min(8192, auto cap)`   | Heap for the web/MCP server's forked analyze worker (#2649). Defaults to the historical 8192 MB bounded by the machine/container's RAM-aware auto cap; set an absolute MB value to override.                                                              |
+| `GITNEXUS_CPP_CAPTURE_BUDGET_MS`                | `20000`                 | Per-file wall-clock budget for C++ capture extraction; on breach the file keeps partial captures with a warning (#2432). `0` expires immediately.                                                |
 
 ### Graph cleanup tuning
 
@@ -548,6 +688,56 @@ After scope resolution, analyze prunes inert block-local value symbols (a functi
 
 Programmatic callers can pass `keepLocalValueSymbols: true` in `PipelineOptions` instead of setting the env var.
 
+### Scope-resolution property-key dispatch cap
+
+During scope resolution GitNexus synthesizes CALLS edges through *property-key
+dispatch* — call sites like `hooks.emitScopeCaptures()` where a property key is
+registered by multiple definitions across the codebase. To keep this fan-in
+bounded, each property key is capped at **32 registrations**: a key registered
+by more than 32 distinct functions is skipped entirely (no CALLS are synthesized
+through it), and the dropped key names are surfaced in the analyze log for
+operator visibility. The cap is calibrated at 2× this repo's own provider table
+(16 legitimate registrations, one per language provider).
+
+| Variable                                | Default | Effect                                                                                                                                                                                                                                                                                                                |
+| --------------------------------------- | ------- | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
+| `GITNEXUS_MAX_PROPERTY_DISPATCH_FANOUT` | `32`    | Per-property-key registration cap in the property-dispatch scope-resolution pass. Set to a positive integer to raise it for repositories whose provider/hook tables exceed the default and lose CALLS coverage on a legitimate key; non-integer or `< 1` values fall back to `32`. Lowering it tightens the overflow budget. |
+
+```bash
+# A property key registered by 40 functions overflows the default 32 and drops
+# all CALLS through it — raise the cap for that repo and rebuild so scope
+# resolution reruns.
+export GITNEXUS_MAX_PROPERTY_DISPATCH_FANOUT=64
+npx gitnexus analyze --force
+```
+
+### Scope-resolution dispatch-target cap
+
+During scope resolution GitNexus resolves calls that flow through *callable
+values* — function/method references bound to variables, passed as arguments,
+or stored in maps/tables. To keep that inclusion-based resolution finite, each
+callable site is capped at **32 dispatch targets**. When a site gathers more
+candidates than the cap it is treated as **overflowed** and *all* of its call
+edges are dropped — a cliff, not a tail, so a repository with a legitimately
+wide dispatch table (a single callable site resolving to 33+ targets) loses
+that site's whole call chain. In that case `analyze` logs
+`callable-value-flow: candidate set exceeded the cap; no partial CALLS emitted`
+alongside a warning carrying the language, the overflowing context, the
+candidate count, and the cap (32).
+
+Raise the cap for such repositories:
+
+| Variable                              | Default | Effect                                                                                                                                                                                                                                                                                                              |
+| ------------------------------------- | ------- | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
+| `GITNEXUS_MAX_CALLABLE_VALUE_TARGETS` | `32`    | Per-callable-site dispatch-target cap in the callable-value-flow scope-resolution pass. Set to a positive integer to raise it for repositories whose wide dispatch tables overflow the default and lose a whole call chain; non-integer or `< 1` values fall back to `32`. Lowering it tightens the overflow budget. |
+
+```bash
+# A callable site resolving to 48 targets overflows the default 32 and drops
+# the chain — raise the cap for that repo and rebuild so scope resolution reruns.
+export GITNEXUS_MAX_CALLABLE_VALUE_TARGETS=64
+npx gitnexus analyze --force
+```
+
 ### Hook augmentation and skip diagnostics
 
 The Claude Code / Antigravity hooks keep their **stderr** silent on normal skip

package/dist/_shared/graph/types.d.ts

@@ -55,19 +55,38 @@ export type NodeProperties = {
     [key: string]: unknown;
 };
 export type RelationshipType = 'CONTAINS' | 'CALLS' | 'INHERITS' | 'METHOD_OVERRIDES' | 'METHOD_IMPLEMENTS' | 'IMPORTS' | 'USES' | 'DEFINES' | 'DECORATES' | 'IMPLEMENTS' | 'EXTENDS' | 'HAS_METHOD' | 'HAS_PROPERTY' | 'ACCESSES' | 'MEMBER_OF' | 'STEP_IN_PROCESS' | 'HANDLES_ROUTE' | 'FETCHES' | 'HANDLES_TOOL' | 'ENTRY_POINT_OF' | 'WRAPS' | 'QUERIES'
-/** Dependency-injection edge: a consumer class receives every implementer
- *  of interface `T` via a container-injected collection-typed field
- *  (`List<T>`, `Set<T>`, `Collection<T>`, or `Map<K,T>`). Precondition: the
- *  field carries an injection annotation recognized by a per-language
- *  matcher registered in `di-extractors/` (Java/Spring today: `@Autowired`
- *  or `@Inject`; `@Resource` is excluded — by-name-first semantics).
- *  Source = the consumer Class node (the one owning the field).
- *  Target = an implementing Class node.
+/** Dependency-injection edge: a consumer class receives a likely provider
+ *  through constructor, field, method, or collection injection. A
+ *  per-language resolver identifies the site and provider metadata; the
+ *  shared DI phase uses type heritage, qualifier names, and preferred
+ *  provider markers to resolve it. Ambiguous single injection is represented
+ *  by multiple lower-confidence edges instead of a fabricated exact target.
+ *  Source = the consumer Class, or a factory Method for its parameters.
+ *  Target = a concrete provider Class or synthetic provider CodeElement.
  *  Framework specifics live in the `reason` payload (e.g.
  *  `Spring DI: @Autowired List<T>`), not in this type contract.
  *  Lets Cypher queries trace which beans the container injects into a given
  *  consumer, complementing the structural `IMPLEMENTS` heritage edges. */
  | 'INJECTS'
+/** Spring activation constraint. Source = a conditional Bean/configuration
+ *  Class or factory Method; target = the referenced configuration Property
+ *  when statically identifiable, otherwise an Annotation evidence node.
+ *  The reason records the annotation and explicitly marks activation as
+ *  unknown because runtime environment/classpath state may override source
+ *  configuration. */
+ | 'CONDITIONAL_ON'
+/** Metadata declaration/discovery relationship. Source = a metadata File;
+ *  target = the declared candidate node. This deliberately does not claim
+ *  that the target is active or registered at runtime. Framework-specific
+ *  semantics belong in `reason` so the relationship can be reused by other
+ *  metadata-driven systems. */
+ | 'DECLARES'
+/** Framework advice relationship. Source = the class-like/Method whose behavior
+ *  is intercepted; target = either the concrete advice Method or a synthetic
+ *  CodeElement describing a declarative interceptor (transaction, cache, or
+ *  method security). Runtime activation remains explicitly unknown in the
+ *  relationship reason; this edge records statically visible advice only. */
+ | 'ADVISED_BY'
 /** Vue component event system: a handler function in a parent component is
  *  bound to an event emitted by a child component (`@event="handlerFn"`).
  *  Source = handler Function/Method node in the parent.

package/dist/_shared/graph/types.d.ts.map

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package/dist/_shared/index.d.ts

@@ -5,7 +5,7 @@ export { SupportedLanguages } from './languages.js';
 export { getLanguageFromFilename, getSyntaxLanguageFromFilename, isBladeTemplateFilename, } from './language-detection.js';
 export type { MroStrategy } from './mro-strategy.js';
 export type { PipelinePhase, PipelineProgress } from './pipeline.js';
-export type { ParameterTypeClass, SymbolDefinition } from './scope-resolution/symbol-definition.js';
+export type { ParameterTypeClass, SymbolDefinition, TypeParameter, } from './scope-resolution/symbol-definition.js';
 export type { ScopeId, DefId, ScopeKind, Range, Capture, CaptureMatch, BindingRef, ImportEdge, TypeRef, Scope, ResolutionEvidence, Resolution, Reference, ReferenceIndex, LookupParams, RegistryContributor, ParsedImport, ParsedTypeBinding, WorkspaceIndex, Callsite, ScopeLookup, } from './scope-resolution/types.js';
 export { EvidenceWeights, typeBindingWeightAtDepth } from './scope-resolution/evidence-weights.js';
 export { ORIGIN_PRIORITY } from './scope-resolution/origin-priority.js';
@@ -21,7 +21,8 @@ export type { QualifiedNameIndex } from './scope-resolution/qualified-name-index
 export { resolveTypeRef } from './scope-resolution/resolve-type-ref.js';
 export type { ResolveTypeRefContext } from './scope-resolution/resolve-type-ref.js';
 export type { ParsedFile } from './scope-resolution/parsed-file.js';
-export type { ReferenceSite, ReferenceKind, CallForm } from './scope-resolution/reference-site.js';
+export type { ReferenceSite, ReferenceKind, CallForm, MixedChainStep, } from './scope-resolution/reference-site.js';
+export type { CallableFlowOperand, CallableFlowExpectedSignature, CallableFlowPassingMode, CallableFlowInvocationKind, CallableFlowSeedSite, CallableFlowCopySite, CallableFlowAliasSite, CallableFlowAddressSite, CallableFlowStoreSite, CallableFlowLoadSite, CallableFlowFormalSite, CallableFlowArgumentSite, CallableFlowInvokeSite, CallableFlowSite, } from './scope-resolution/callable-flow-site.js';
 export { buildMethodDispatchIndex } from './scope-resolution/method-dispatch-index.js';
 export type { MethodDispatchIndex, MethodDispatchInput, } from './scope-resolution/method-dispatch-index.js';
 export { finalize } from './scope-resolution/finalize-algorithm.js';
@@ -54,7 +55,7 @@ export { withRetry, computeBackoffMs } from './integrations/retry.js';
 export type { RetryOptions, RetryDecision } from './integrations/retry.js';
 export { CircuitBreaker, CircuitOpenError, getBreaker } from './integrations/circuit-breaker.js';
 export type { CircuitBreakerOptions } from './integrations/circuit-breaker.js';
-export { resilientFetch, ResilientFetchExhaustedError, RETRY_AFTER_CAP_MS, parseRetryAfter, } from './integrations/resilient-fetch.js';
+export { resilientFetch, ResilientFetchExhaustedError, RETRY_AFTER_CAP_MS, parseRetryAfter, isTerminalNetworkError, } from './integrations/resilient-fetch.js';
 export type { ResilientFetchOptions } from './integrations/resilient-fetch.js';
 export { UNDERSTAND_QUICKLY_DISPATCH_URL, UNDERSTAND_QUICKLY_EVENT_TYPE, UNDERSTAND_QUICKLY_TOKEN_ENV, buildUqDispatchPayload, isValidOwnerRepo, parseOwnerRepoFromRemote, stripGitSuffix, } from './integrations/understand-quickly.js';
 export type { UqDispatchPayload } from './integrations/understand-quickly.js';

package/dist/_shared/index.d.ts.map

@@ -1 +1 @@
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package/dist/_shared/index.js

@@ -40,7 +40,7 @@ export { buildPositionIndex } from './scope-resolution/position-index.js';
 // NOT add them here. Production consumers must not call them.
 export { withRetry, computeBackoffMs } from './integrations/retry.js';
 export { CircuitBreaker, CircuitOpenError, getBreaker } from './integrations/circuit-breaker.js';
-export { resilientFetch, ResilientFetchExhaustedError, RETRY_AFTER_CAP_MS, parseRetryAfter, } from './integrations/resilient-fetch.js';
+export { resilientFetch, ResilientFetchExhaustedError, RETRY_AFTER_CAP_MS, parseRetryAfter, isTerminalNetworkError, } from './integrations/resilient-fetch.js';
 // Understand-Quickly registry integration (opt-in)
 export { UNDERSTAND_QUICKLY_DISPATCH_URL, UNDERSTAND_QUICKLY_EVENT_TYPE, UNDERSTAND_QUICKLY_TOKEN_ENV, buildUqDispatchPayload, isValidOwnerRepo, parseOwnerRepoFromRemote, stripGitSuffix, } from './integrations/understand-quickly.js';
 //# sourceMappingURL=index.js.map

package/dist/_shared/index.js.map

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package/dist/_shared/integrations/circuit-breaker.d.ts.map

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package/dist/_shared/integrations/resilient-fetch.d.ts

@@ -25,6 +25,8 @@ export interface ResilientFetchOptions {
     breakerOptions?: CircuitBreakerOptions;
     /** Tuning knobs for the retry helper. */
     retry?: Partial<Pick<RetryOptions, 'maxAttempts' | 'baseDelayMs' | 'capDelayMs'>> & {
+        /** Upper bound on a single Retry-After wait. Defaults to RETRY_AFTER_CAP_MS. */
+        retryAfterCapMs?: number;
         sleep?: RetryOptions['sleep'];
         random?: RetryOptions['random'];
     };
@@ -57,6 +59,22 @@ type Outcome = {
     kind: 'retryable-network';
     err: unknown;
 };
+/**
+ * The network errors `resilientFetch` treats as terminal — never retried, and
+ * routed through the breaker's neutral path.
+ *
+ * Both timer-fired aborts (`AbortSignal.timeout()` → `TimeoutError`) and
+ * caller-driven aborts (`AbortController.abort()` → `AbortError`) qualify:
+ * retrying against an already-aborted signal would fail again immediately, and
+ * neither outcome reflects backend health.
+ *
+ * Exported because callers that hook into the retry loop (a `fetchImpl` that
+ * inspects or re-wraps its own throws) have to agree with {@link
+ * classifyOutcome} about which errors are terminal. Sharing this predicate is
+ * what makes that agreement structural instead of a hand-copied condition that
+ * can drift.
+ */
+export declare function isTerminalNetworkError(err: unknown): err is DOMException;
 /** Exported for unit tests. */
 export declare function classifyOutcome(result: {
     kind: 'error';
@@ -64,7 +82,7 @@ export declare function classifyOutcome(result: {
 } | {
     kind: 'response';
     resp: Response;
-}, now: () => number): Outcome;
+}, now: () => number, retryAfterCapMs?: number): Outcome;
 /** Final error thrown when retries are exhausted on a 5xx / 429. */
 export declare class ResilientFetchExhaustedError extends Error {
     readonly response: Response;

package/dist/_shared/integrations/resilient-fetch.d.ts.map

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