gitnexus 1.4.1 → 1.4.6

package/README.md

@@ -1,194 +1,215 @@
-# GitNexus
-
-**Graph-powered code intelligence for AI agents.** Index any codebase into a knowledge graph, then query it via MCP or CLI.
-
-Works with **Cursor**, **Claude Code**, **Windsurf**, **Cline**, **OpenCode**, and any MCP-compatible tool.
-
-[![npm version](https://img.shields.io/npm/v/gitnexus.svg)](https://www.npmjs.com/package/gitnexus)
-[![License: PolyForm Noncommercial](https://img.shields.io/badge/License-PolyForm%20Noncommercial-blue.svg)](https://polyformproject.org/licenses/noncommercial/1.0.0/)
-
----
-
-## Why?
-
-AI coding tools don't understand your codebase structure. They edit a function without knowing 47 other functions depend on it. GitNexus fixes this by **precomputing every dependency, call chain, and relationship** into a queryable graph.
-
-**Three commands to give your AI agent full codebase awareness.**
-
-## Quick Start
-
-```bash
-# Index your repo (run from repo root)
-npx gitnexus analyze
-```
-
-That's it. This indexes the codebase, installs agent skills, registers Claude Code hooks, and creates `AGENTS.md` / `CLAUDE.md` context files — all in one command.
-
-To configure MCP for your editor, run `npx gitnexus setup` once — or set it up manually below.
-
-`gitnexus setup` auto-detects your editors and writes the correct global MCP config. You only need to run it once.
-
-### Editor Support
-
-| Editor | MCP | Skills | Hooks (auto-augment) | Support |
-|--------|-----|--------|---------------------|---------|
-| **Claude Code** | Yes | Yes | Yes (PreToolUse) | **Full** |
-| **Cursor** | Yes | Yes | — | MCP + Skills |
-| **Windsurf** | Yes | — | — | MCP |
-| **OpenCode** | Yes | Yes | — | MCP + Skills |
-
-> **Claude Code** gets the deepest integration: MCP tools + agent skills + PreToolUse hooks that automatically enrich grep/glob/bash calls with knowledge graph context.
-
-### Community Integrations
-
-| Agent | Install | Source |
-|-------|---------|--------|
-| [pi](https://pi.dev) | `pi install npm:pi-gitnexus` | [pi-gitnexus](https://github.com/tintinweb/pi-gitnexus) |
-
-## MCP Setup (manual)
-
-If you prefer to configure manually instead of using `gitnexus setup`:
-
-### Claude Code (full support — MCP + skills + hooks)
-
-```bash
-claude mcp add gitnexus -- npx -y gitnexus@latest mcp
-```
-
-### Cursor / Windsurf
-
-Add to `~/.cursor/mcp.json` (global — works for all projects):
-
-```json
-{
-  "mcpServers": {
-    "gitnexus": {
-      "command": "npx",
-      "args": ["-y", "gitnexus@latest", "mcp"]
-    }
-  }
-}
-```
-
-### OpenCode
-
-Add to `~/.config/opencode/config.json`:
-
-```json
-{
-  "mcp": {
-    "gitnexus": {
-      "command": "npx",
-      "args": ["-y", "gitnexus@latest", "mcp"]
-    }
-  }
-}
-```
-
-## How It Works
-
-GitNexus builds a complete knowledge graph of your codebase through a multi-phase indexing pipeline:
-
-1. **Structure** — Walks the file tree and maps folder/file relationships
-2. **Parsing** — Extracts functions, classes, methods, and interfaces using Tree-sitter ASTs
-3. **Resolution** — Resolves imports and function calls across files with language-aware logic
-4. **Clustering** — Groups related symbols into functional communities
-5. **Processes** — Traces execution flows from entry points through call chains
-6. **Search** — Builds hybrid search indexes for fast retrieval
-
-The result is a **KuzuDB graph database** stored locally in `.gitnexus/` with full-text search and semantic embeddings.
-
-## MCP Tools
-
-Your AI agent gets these tools automatically:
-
-| Tool | What It Does | `repo` Param |
-|------|-------------|--------------|
-| `list_repos` | Discover all indexed repositories | — |
-| `query` | Process-grouped hybrid search (BM25 + semantic + RRF) | Optional |
-| `context` | 360-degree symbol view — categorized refs, process participation | Optional |
-| `impact` | Blast radius analysis with depth grouping and confidence | Optional |
-| `detect_changes` | Git-diff impact — maps changed lines to affected processes | Optional |
-| `rename` | Multi-file coordinated rename with graph + text search | Optional |
-| `cypher` | Raw Cypher graph queries | Optional |
-
-> With one indexed repo, the `repo` param is optional. With multiple, specify which: `query({query: "auth", repo: "my-app"})`.
-
-## MCP Resources
-
-| Resource | Purpose |
-|----------|---------|
-| `gitnexus://repos` | List all indexed repositories (read first) |
-| `gitnexus://repo/{name}/context` | Codebase stats, staleness check, and available tools |
-| `gitnexus://repo/{name}/clusters` | All functional clusters with cohesion scores |
-| `gitnexus://repo/{name}/cluster/{name}` | Cluster members and details |
-| `gitnexus://repo/{name}/processes` | All execution flows |
-| `gitnexus://repo/{name}/process/{name}` | Full process trace with steps |
-| `gitnexus://repo/{name}/schema` | Graph schema for Cypher queries |
-
-## MCP Prompts
-
-| Prompt | What It Does |
-|--------|-------------|
-| `detect_impact` | Pre-commit change analysis — scope, affected processes, risk level |
-| `generate_map` | Architecture documentation from the knowledge graph with mermaid diagrams |
-
-## CLI Commands
-
-```bash
-gitnexus setup                    # Configure MCP for your editors (one-time)
-gitnexus analyze [path]           # Index a repository (or update stale index)
-gitnexus analyze --force          # Force full re-index
-gitnexus analyze --skip-embeddings  # Skip embedding generation (faster)
-gitnexus mcp                     # Start MCP server (stdio) — serves all indexed repos
-gitnexus serve                   # Start local HTTP server (multi-repo) for web UI
-gitnexus list                    # List all indexed repositories
-gitnexus status                  # Show index status for current repo
-gitnexus clean                   # Delete index for current repo
-gitnexus clean --all --force     # Delete all indexes
-gitnexus wiki [path]             # Generate LLM-powered docs from knowledge graph
-gitnexus wiki --model <model>    # Wiki with custom LLM model (default: gpt-4o-mini)
-```
-
-## Multi-Repo Support
-
-GitNexus supports indexing multiple repositories. Each `gitnexus analyze` registers the repo in a global registry (`~/.gitnexus/registry.json`). The MCP server serves all indexed repos automatically.
-
-## Supported Languages
-
-TypeScript, JavaScript, Python, Java, C, C++, C#, Go, Rust, PHP, Swift
-
-## Agent Skills
-
-GitNexus ships with skill files that teach AI agents how to use the tools effectively:
-
-- **Exploring** — Navigate unfamiliar code using the knowledge graph
-- **Debugging** — Trace bugs through call chains
-- **Impact Analysis** — Analyze blast radius before changes
-- **Refactoring** — Plan safe refactors using dependency mapping
-
-Installed automatically by both `gitnexus analyze` (per-repo) and `gitnexus setup` (global).
-
-## Requirements
-
-- Node.js >= 18
-- Git repository (uses git for commit tracking)
-
-## Privacy
-
-- All processing happens locally on your machine
-- No code is sent to any server
-- Index stored in `.gitnexus/` inside your repo (gitignored)
-- Global registry at `~/.gitnexus/` stores only paths and metadata
-
-## Web UI
-
-GitNexus also has a browser-based UI at [gitnexus.vercel.app](https://gitnexus.vercel.app) — 100% client-side, your code never leaves the browser.
-
-**Local Backend Mode:** Run `gitnexus serve` and open the web UI locally — it auto-detects the server and shows all your indexed repos, with full AI chat support. No need to re-upload or re-index. The agent's tools (Cypher queries, search, code navigation) route through the backend HTTP API automatically.
-
-## License
-
-[PolyForm Noncommercial 1.0.0](https://polyformproject.org/licenses/noncommercial/1.0.0/)
-
-Free for non-commercial use. Contact for commercial licensing.
+# GitNexus
+
+**Graph-powered code intelligence for AI agents.** Index any codebase into a knowledge graph, then query it via MCP or CLI.
+
+Works with **Cursor**, **Claude Code**, **Windsurf**, **Cline**, **OpenCode**, and any MCP-compatible tool.
+
+[![npm version](https://img.shields.io/npm/v/gitnexus.svg)](https://www.npmjs.com/package/gitnexus)
+[![License: PolyForm Noncommercial](https://img.shields.io/badge/License-PolyForm%20Noncommercial-blue.svg)](https://polyformproject.org/licenses/noncommercial/1.0.0/)
+
+---
+
+## Why?
+
+AI coding tools don't understand your codebase structure. They edit a function without knowing 47 other functions depend on it. GitNexus fixes this by **precomputing every dependency, call chain, and relationship** into a queryable graph.
+
+**Three commands to give your AI agent full codebase awareness.**
+
+## Quick Start
+
+```bash
+# Index your repo (run from repo root)
+npx gitnexus analyze
+```
+
+That's it. This indexes the codebase, installs agent skills, registers Claude Code hooks, and creates `AGENTS.md` / `CLAUDE.md` context files — all in one command.
+
+To configure MCP for your editor, run `npx gitnexus setup` once — or set it up manually below.
+
+`gitnexus setup` auto-detects your editors and writes the correct global MCP config. You only need to run it once.
+
+### Editor Support
+
+| Editor | MCP | Skills | Hooks (auto-augment) | Support |
+|--------|-----|--------|---------------------|---------|
+| **Claude Code** | Yes | Yes | Yes (PreToolUse) | **Full** |
+| **Cursor** | Yes | Yes | — | MCP + Skills |
+| **Windsurf** | Yes | — | — | MCP |
+| **OpenCode** | Yes | Yes | — | MCP + Skills |
+
+> **Claude Code** gets the deepest integration: MCP tools + agent skills + PreToolUse hooks that automatically enrich grep/glob/bash calls with knowledge graph context.
+
+### Community Integrations
+
+| Agent | Install | Source |
+|-------|---------|--------|
+| [pi](https://pi.dev) | `pi install npm:pi-gitnexus` | [pi-gitnexus](https://github.com/tintinweb/pi-gitnexus) |
+
+## MCP Setup (manual)
+
+If you prefer to configure manually instead of using `gitnexus setup`:
+
+### Claude Code (full support — MCP + skills + hooks)
+
+```bash
+claude mcp add gitnexus -- npx -y gitnexus@latest mcp
+```
+
+### Cursor / Windsurf
+
+Add to `~/.cursor/mcp.json` (global — works for all projects):
+
+```json
+{
+  "mcpServers": {
+    "gitnexus": {
+      "command": "npx",
+      "args": ["-y", "gitnexus@latest", "mcp"]
+    }
+  }
+}
+```
+
+### OpenCode
+
+Add to `~/.config/opencode/config.json`:
+
+```json
+{
+  "mcp": {
+    "gitnexus": {
+      "command": "npx",
+      "args": ["-y", "gitnexus@latest", "mcp"]
+    }
+  }
+}
+```
+
+## How It Works
+
+GitNexus builds a complete knowledge graph of your codebase through a multi-phase indexing pipeline:
+
+1. **Structure** — Walks the file tree and maps folder/file relationships
+2. **Parsing** — Extracts functions, classes, methods, and interfaces using Tree-sitter ASTs
+3. **Resolution** — Resolves imports and function calls across files with language-aware logic
+4. **Clustering** — Groups related symbols into functional communities
+5. **Processes** — Traces execution flows from entry points through call chains
+6. **Search** — Builds hybrid search indexes for fast retrieval
+
+The result is a **LadybugDB graph database** stored locally in `.gitnexus/` with full-text search and semantic embeddings.
+
+## MCP Tools
+
+Your AI agent gets these tools automatically:
+
+| Tool | What It Does | `repo` Param |
+|------|-------------|--------------|
+| `list_repos` | Discover all indexed repositories | — |
+| `query` | Process-grouped hybrid search (BM25 + semantic + RRF) | Optional |
+| `context` | 360-degree symbol view — categorized refs, process participation | Optional |
+| `impact` | Blast radius analysis with depth grouping and confidence | Optional |
+| `detect_changes` | Git-diff impact — maps changed lines to affected processes | Optional |
+| `rename` | Multi-file coordinated rename with graph + text search | Optional |
+| `cypher` | Raw Cypher graph queries | Optional |
+
+> With one indexed repo, the `repo` param is optional. With multiple, specify which: `query({query: "auth", repo: "my-app"})`.
+
+## MCP Resources
+
+| Resource | Purpose |
+|----------|---------|
+| `gitnexus://repos` | List all indexed repositories (read first) |
+| `gitnexus://repo/{name}/context` | Codebase stats, staleness check, and available tools |
+| `gitnexus://repo/{name}/clusters` | All functional clusters with cohesion scores |
+| `gitnexus://repo/{name}/cluster/{name}` | Cluster members and details |
+| `gitnexus://repo/{name}/processes` | All execution flows |
+| `gitnexus://repo/{name}/process/{name}` | Full process trace with steps |
+| `gitnexus://repo/{name}/schema` | Graph schema for Cypher queries |
+
+## MCP Prompts
+
+| Prompt | What It Does |
+|--------|-------------|
+| `detect_impact` | Pre-commit change analysis — scope, affected processes, risk level |
+| `generate_map` | Architecture documentation from the knowledge graph with mermaid diagrams |
+
+## CLI Commands
+
+```bash
+gitnexus setup                    # Configure MCP for your editors (one-time)
+gitnexus analyze [path]           # Index a repository (or update stale index)
+gitnexus analyze --force          # Force full re-index
+gitnexus analyze --embeddings     # Enable embedding generation (slower, better search)
+gitnexus analyze --verbose        # Log skipped files when parsers are unavailable
+gitnexus mcp                     # Start MCP server (stdio) — serves all indexed repos
+gitnexus serve                   # Start local HTTP server (multi-repo) for web UI
+gitnexus list                    # List all indexed repositories
+gitnexus status                  # Show index status for current repo
+gitnexus clean                   # Delete index for current repo
+gitnexus clean --all --force     # Delete all indexes
+gitnexus wiki [path]             # Generate LLM-powered docs from knowledge graph
+gitnexus wiki --model <model>    # Wiki with custom LLM model (default: gpt-4o-mini)
+```
+
+## Multi-Repo Support
+
+GitNexus supports indexing multiple repositories. Each `gitnexus analyze` registers the repo in a global registry (`~/.gitnexus/registry.json`). The MCP server serves all indexed repos automatically.
+
+## Supported Languages
+
+TypeScript, JavaScript, Python, Java, C, C++, C#, Go, Rust, PHP, Kotlin, Swift, Ruby
+
+### Language Feature Matrix
+
+| Language | Imports | Named Bindings | Exports | Heritage | Type Annotations | Constructor Inference | Config | Frameworks | Entry Points |
+|----------|---------|----------------|---------|----------|-----------------|---------------------|--------|------------|-------------|
+| TypeScript | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ |
+| JavaScript | ✓ | ✓ | ✓ | ✓ | — | ✓ | ✓ | ✓ | ✓ |
+| Python | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ |
+| Java | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | — | ✓ | ✓ |
+| Kotlin | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | — | ✓ | ✓ |
+| C# | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ |
+| Go | ✓ | — | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ |
+| Rust | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | — | ✓ | ✓ |
+| PHP | ✓ | ✓ | ✓ | — | ✓ | ✓ | ✓ | ✓ | ✓ |
+| Ruby | ✓ | — | ✓ | ✓ | — | ✓ | — | ✓ | ✓ |
+| Swift | — | — | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ |
+| C | — | — | ✓ | — | ✓ | ✓ | — | ✓ | ✓ |
+| C++ | — | — | ✓ | ✓ | ✓ | ✓ | — | ✓ | ✓ |
+
+**Imports** — cross-file import resolution · **Named Bindings** — `import { X as Y }` / re-export tracking · **Exports** — public/exported symbol detection · **Heritage** — class inheritance, interfaces, mixins · **Type Annotations** — explicit type extraction for receiver resolution · **Constructor Inference** — infer receiver type from constructor calls (`self`/`this` resolution included for all languages) · **Config** — language toolchain config parsing (tsconfig, go.mod, etc.) · **Frameworks** — AST-based framework pattern detection · **Entry Points** — entry point scoring heuristics
+
+## Agent Skills
+
+GitNexus ships with skill files that teach AI agents how to use the tools effectively:
+
+- **Exploring** — Navigate unfamiliar code using the knowledge graph
+- **Debugging** — Trace bugs through call chains
+- **Impact Analysis** — Analyze blast radius before changes
+- **Refactoring** — Plan safe refactors using dependency mapping
+
+Installed automatically by both `gitnexus analyze` (per-repo) and `gitnexus setup` (global).
+
+## Requirements
+
+- Node.js >= 18
+- Git repository (uses git for commit tracking)
+
+## Privacy
+
+- All processing happens locally on your machine
+- No code is sent to any server
+- Index stored in `.gitnexus/` inside your repo (gitignored)
+- Global registry at `~/.gitnexus/` stores only paths and metadata
+
+## Web UI
+
+GitNexus also has a browser-based UI at [gitnexus.vercel.app](https://gitnexus.vercel.app) — 100% client-side, your code never leaves the browser.
+
+**Local Backend Mode:** Run `gitnexus serve` and open the web UI locally — it auto-detects the server and shows all your indexed repos, with full AI chat support. No need to re-upload or re-index. The agent's tools (Cypher queries, search, code navigation) route through the backend HTTP API automatically.
+
+## License
+
+[PolyForm Noncommercial 1.0.0](https://polyformproject.org/licenses/noncommercial/1.0.0/)
+
+Free for non-commercial use. Contact for commercial licensing.

package/dist/cli/ai-context.d.ts

@@ -5,6 +5,7 @@
  * AGENTS.md is the standard read by Cursor, Windsurf, OpenCode, Cline, etc.
  * CLAUDE.md is for Claude Code which only reads that file.
  */
+import { type GeneratedSkillInfo } from './skill-gen.js';
 interface RepoStats {
     files?: number;
     nodes?: number;
@@ -16,7 +17,7 @@ interface RepoStats {
 /**
  * Generate AI context files after indexing
  */
-export declare function generateAIContextFiles(repoPath: string, _storagePath: string, projectName: string, stats: RepoStats): Promise<{
+export declare function generateAIContextFiles(repoPath: string, _storagePath: string, projectName: string, stats: RepoStats, generatedSkills?: GeneratedSkillInfo[]): Promise<{
     files: string[];
 }>;
 export {};