gitnexus 1.2.8 → 1.2.9

package/package.json

@@ -1,82 +1,82 @@
-{
-  "name": "gitnexus",
-  "version": "1.2.8",
-  "description": "Graph-powered code intelligence for AI agents. Index any codebase, query via MCP or CLI.",
-  "author": "Abhigyan Patwari",
-  "license": "PolyForm-Noncommercial-1.0.0",
-  "homepage": "https://github.com/abhigyanpatwari/GitNexus#readme",
-  "repository": {
-    "type": "git",
-    "url": "git+https://github.com/abhigyanpatwari/GitNexus.git",
-    "directory": "gitnexus"
-  },
-  "bugs": {
-    "url": "https://github.com/abhigyanpatwari/GitNexus/issues"
-  },
-  "keywords": [
-    "mcp",
-    "model-context-protocol",
-    "code-intelligence",
-    "knowledge-graph",
-    "cursor",
-    "claude",
-    "ai-agent",
-    "gitnexus",
-    "static-analysis",
-    "codebase-indexing"
-  ],
-  "type": "module",
-  "bin": {
-    "gitnexus": "dist/cli/index.js"
-  },
-  "files": [
-    "dist",
-    "hooks",
-    "skills",
-    "vendor"
-  ],
-  "scripts": {
-    "build": "tsc",
-    "dev": "tsx watch src/cli/index.ts",
-    "prepare": "npm run build"
-  },
-  "dependencies": {
-    "@huggingface/transformers": "^3.0.0",
-    "@modelcontextprotocol/sdk": "^1.0.0",
-    "cli-progress": "^3.12.0",
-    "commander": "^12.0.0",
-    "cors": "^2.8.5",
-    "express": "^4.19.2",
-    "glob": "^11.0.0",
-    "graphology": "^0.25.4",
-    "graphology-indices": "^0.17.0",
-    "graphology-utils": "^2.3.0",
-    "kuzu": "^0.11.3",
-    "lru-cache": "^11.0.0",
-    "mnemonist": "^0.39.0",
-    "pandemonium": "^2.4.0",
-    "tree-sitter": "^0.21.0",
-    "tree-sitter-c": "^0.21.0",
-    "tree-sitter-c-sharp": "^0.21.0",
-    "tree-sitter-cpp": "^0.22.0",
-    "tree-sitter-go": "^0.21.0",
-    "tree-sitter-java": "^0.21.0",
-    "tree-sitter-javascript": "^0.21.0",
-    "tree-sitter-python": "^0.21.0",
-    "tree-sitter-rust": "^0.21.0",
-    "tree-sitter-typescript": "^0.21.0",
-    "typescript": "^5.4.5",
-    "uuid": "^13.0.0"
-  },
-  "devDependencies": {
-    "@types/cli-progress": "^3.11.6",
-    "@types/cors": "^2.8.17",
-    "@types/express": "^4.17.21",
-    "@types/node": "^20.0.0",
-    "@types/uuid": "^10.0.0",
-    "tsx": "^4.0.0"
-  },
-  "engines": {
-    "node": ">=18.0.0"
-  }
-}
+{
+  "name": "gitnexus",
+  "version": "1.2.9",
+  "description": "Graph-powered code intelligence for AI agents. Index any codebase, query via MCP or CLI.",
+  "author": "Abhigyan Patwari",
+  "license": "PolyForm-Noncommercial-1.0.0",
+  "homepage": "https://github.com/abhigyanpatwari/GitNexus#readme",
+  "repository": {
+    "type": "git",
+    "url": "git+https://github.com/abhigyanpatwari/GitNexus.git",
+    "directory": "gitnexus"
+  },
+  "bugs": {
+    "url": "https://github.com/abhigyanpatwari/GitNexus/issues"
+  },
+  "keywords": [
+    "mcp",
+    "model-context-protocol",
+    "code-intelligence",
+    "knowledge-graph",
+    "cursor",
+    "claude",
+    "ai-agent",
+    "gitnexus",
+    "static-analysis",
+    "codebase-indexing"
+  ],
+  "type": "module",
+  "bin": {
+    "gitnexus": "dist/cli/index.js"
+  },
+  "files": [
+    "dist",
+    "hooks",
+    "skills",
+    "vendor"
+  ],
+  "scripts": {
+    "build": "tsc",
+    "dev": "tsx watch src/cli/index.ts",
+    "prepare": "npm run build"
+  },
+  "dependencies": {
+    "@huggingface/transformers": "^3.0.0",
+    "@modelcontextprotocol/sdk": "^1.0.0",
+    "cli-progress": "^3.12.0",
+    "commander": "^12.0.0",
+    "cors": "^2.8.5",
+    "express": "^4.19.2",
+    "glob": "^11.0.0",
+    "graphology": "^0.25.4",
+    "graphology-indices": "^0.17.0",
+    "graphology-utils": "^2.3.0",
+    "kuzu": "^0.11.3",
+    "lru-cache": "^11.0.0",
+    "mnemonist": "^0.39.0",
+    "pandemonium": "^2.4.0",
+    "tree-sitter": "^0.21.0",
+    "tree-sitter-c": "^0.21.0",
+    "tree-sitter-c-sharp": "^0.21.0",
+    "tree-sitter-cpp": "^0.22.0",
+    "tree-sitter-go": "^0.21.0",
+    "tree-sitter-java": "^0.21.0",
+    "tree-sitter-javascript": "^0.21.0",
+    "tree-sitter-python": "^0.21.0",
+    "tree-sitter-rust": "^0.21.0",
+    "tree-sitter-typescript": "^0.21.0",
+    "typescript": "^5.4.5",
+    "uuid": "^13.0.0"
+  },
+  "devDependencies": {
+    "@types/cli-progress": "^3.11.6",
+    "@types/cors": "^2.8.17",
+    "@types/express": "^4.17.21",
+    "@types/node": "^20.0.0",
+    "@types/uuid": "^10.0.0",
+    "tsx": "^4.0.0"
+  },
+  "engines": {
+    "node": ">=18.0.0"
+  }
+}

package/skills/debugging.md

@@ -1,85 +1,85 @@
----
-name: gitnexus-debugging
-description: Trace bugs through call chains using knowledge graph
----
-
-# Debugging with GitNexus
-
-## When to Use
-- "Why is this function failing?"
-- "Trace where this error comes from"
-- "Who calls this method?"
-- "This endpoint returns 500"
-- Investigating bugs, errors, or unexpected behavior
-
-## Workflow
-
-```
-1. gitnexus_query({query: "<error or symptom>"})            → Find related execution flows
-2. gitnexus_context({name: "<suspect>"})                    → See callers/callees/processes
-3. READ gitnexus://repo/{name}/process/{name}                → Trace execution flow
-4. gitnexus_cypher({query: "MATCH path..."})                 → Custom traces if needed
-```
-
-> If "Index is stale" → run `npx gitnexus analyze` in terminal.
-
-## Checklist
-
-```
-- [ ] Understand the symptom (error message, unexpected behavior)
-- [ ] gitnexus_query for error text or related code
-- [ ] Identify the suspect function from returned processes
-- [ ] gitnexus_context to see callers and callees
-- [ ] Trace execution flow via process resource if applicable
-- [ ] gitnexus_cypher for custom call chain traces if needed
-- [ ] Read source files to confirm root cause
-```
-
-## Debugging Patterns
-
-| Symptom | GitNexus Approach |
-|---------|-------------------|
-| Error message | `gitnexus_query` for error text → `context` on throw sites |
-| Wrong return value | `context` on the function → trace callees for data flow |
-| Intermittent failure | `context` → look for external calls, async deps |
-| Performance issue | `context` → find symbols with many callers (hot paths) |
-| Recent regression | `detect_changes` to see what your changes affect |
-
-## Tools
-
-**gitnexus_query** — find code related to error:
-```
-gitnexus_query({query: "payment validation error"})
-→ Processes: CheckoutFlow, ErrorHandling
-→ Symbols: validatePayment, handlePaymentError, PaymentException
-```
-
-**gitnexus_context** — full context for a suspect:
-```
-gitnexus_context({name: "validatePayment"})
-→ Incoming calls: processCheckout, webhookHandler
-→ Outgoing calls: verifyCard, fetchRates (external API!)
-→ Processes: CheckoutFlow (step 3/7)
-```
-
-**gitnexus_cypher** — custom call chain traces:
-```cypher
-MATCH path = (a)-[:CodeRelation {type: 'CALLS'}*1..2]->(b:Function {name: "validatePayment"})
-RETURN [n IN nodes(path) | n.name] AS chain
-```
-
-## Example: "Payment endpoint returns 500 intermittently"
-
-```
-1. gitnexus_query({query: "payment error handling"})
-   → Processes: CheckoutFlow, ErrorHandling
-   → Symbols: validatePayment, handlePaymentError
-
-2. gitnexus_context({name: "validatePayment"})
-   → Outgoing calls: verifyCard, fetchRates (external API!)
-
-3. READ gitnexus://repo/my-app/process/CheckoutFlow
-   → Step 3: validatePayment → calls fetchRates (external)
-
-4. Root cause: fetchRates calls external API without proper timeout
-```
+---
+name: gitnexus-debugging
+description: Trace bugs through call chains using knowledge graph
+---
+
+# Debugging with GitNexus
+
+## When to Use
+- "Why is this function failing?"
+- "Trace where this error comes from"
+- "Who calls this method?"
+- "This endpoint returns 500"
+- Investigating bugs, errors, or unexpected behavior
+
+## Workflow
+
+```
+1. gitnexus_query({query: "<error or symptom>"})            → Find related execution flows
+2. gitnexus_context({name: "<suspect>"})                    → See callers/callees/processes
+3. READ gitnexus://repo/{name}/process/{name}                → Trace execution flow
+4. gitnexus_cypher({query: "MATCH path..."})                 → Custom traces if needed
+```
+
+> If "Index is stale" → run `npx gitnexus analyze` in terminal.
+
+## Checklist
+
+```
+- [ ] Understand the symptom (error message, unexpected behavior)
+- [ ] gitnexus_query for error text or related code
+- [ ] Identify the suspect function from returned processes
+- [ ] gitnexus_context to see callers and callees
+- [ ] Trace execution flow via process resource if applicable
+- [ ] gitnexus_cypher for custom call chain traces if needed
+- [ ] Read source files to confirm root cause
+```
+
+## Debugging Patterns
+
+| Symptom | GitNexus Approach |
+|---------|-------------------|
+| Error message | `gitnexus_query` for error text → `context` on throw sites |
+| Wrong return value | `context` on the function → trace callees for data flow |
+| Intermittent failure | `context` → look for external calls, async deps |
+| Performance issue | `context` → find symbols with many callers (hot paths) |
+| Recent regression | `detect_changes` to see what your changes affect |
+
+## Tools
+
+**gitnexus_query** — find code related to error:
+```
+gitnexus_query({query: "payment validation error"})
+→ Processes: CheckoutFlow, ErrorHandling
+→ Symbols: validatePayment, handlePaymentError, PaymentException
+```
+
+**gitnexus_context** — full context for a suspect:
+```
+gitnexus_context({name: "validatePayment"})
+→ Incoming calls: processCheckout, webhookHandler
+→ Outgoing calls: verifyCard, fetchRates (external API!)
+→ Processes: CheckoutFlow (step 3/7)
+```
+
+**gitnexus_cypher** — custom call chain traces:
+```cypher
+MATCH path = (a)-[:CodeRelation {type: 'CALLS'}*1..2]->(b:Function {name: "validatePayment"})
+RETURN [n IN nodes(path) | n.name] AS chain
+```
+
+## Example: "Payment endpoint returns 500 intermittently"
+
+```
+1. gitnexus_query({query: "payment error handling"})
+   → Processes: CheckoutFlow, ErrorHandling
+   → Symbols: validatePayment, handlePaymentError
+
+2. gitnexus_context({name: "validatePayment"})
+   → Outgoing calls: verifyCard, fetchRates (external API!)
+
+3. READ gitnexus://repo/my-app/process/CheckoutFlow
+   → Step 3: validatePayment → calls fetchRates (external)
+
+4. Root cause: fetchRates calls external API without proper timeout
+```

package/skills/exploring.md

@@ -1,75 +1,75 @@
----
-name: gitnexus-exploring
-description: Navigate unfamiliar code using GitNexus knowledge graph
----
-
-# Exploring Codebases with GitNexus
-
-## When to Use
-- "How does authentication work?"
-- "What's the project structure?"
-- "Show me the main components"
-- "Where is the database logic?"
-- Understanding code you haven't seen before
-
-## Workflow
-
-```
-1. READ gitnexus://repos                          → Discover indexed repos
-2. READ gitnexus://repo/{name}/context             → Codebase overview, check staleness
-3. gitnexus_query({query: "<what you want to understand>"})  → Find related execution flows
-4. gitnexus_context({name: "<symbol>"})            → Deep dive on specific symbol
-5. READ gitnexus://repo/{name}/process/{name}      → Trace full execution flow
-```
-
-> If step 2 says "Index is stale" → run `npx gitnexus analyze` in terminal.
-
-## Checklist
-
-```
-- [ ] READ gitnexus://repo/{name}/context
-- [ ] gitnexus_query for the concept you want to understand
-- [ ] Review returned processes (execution flows)
-- [ ] gitnexus_context on key symbols for callers/callees
-- [ ] READ process resource for full execution traces
-- [ ] Read source files for implementation details
-```
-
-## Resources
-
-| Resource | What you get |
-|----------|-------------|
-| `gitnexus://repo/{name}/context` | Stats, staleness warning (~150 tokens) |
-| `gitnexus://repo/{name}/clusters` | All functional areas with cohesion scores (~300 tokens) |
-| `gitnexus://repo/{name}/cluster/{name}` | Area members with file paths (~500 tokens) |
-| `gitnexus://repo/{name}/process/{name}` | Step-by-step execution trace (~200 tokens) |
-
-## Tools
-
-**gitnexus_query** — find execution flows related to a concept:
-```
-gitnexus_query({query: "payment processing"})
-→ Processes: CheckoutFlow, RefundFlow, WebhookHandler
-→ Symbols grouped by flow with file locations
-```
-
-**gitnexus_context** — 360-degree view of a symbol:
-```
-gitnexus_context({name: "validateUser"})
-→ Incoming calls: loginHandler, apiMiddleware
-→ Outgoing calls: checkToken, getUserById
-→ Processes: LoginFlow (step 2/5), TokenRefresh (step 1/3)
-```
-
-## Example: "How does payment processing work?"
-
-```
-1. READ gitnexus://repo/my-app/context       → 918 symbols, 45 processes
-2. gitnexus_query({query: "payment processing"})
-   → CheckoutFlow: processPayment → validateCard → chargeStripe
-   → RefundFlow: initiateRefund → calculateRefund → processRefund
-3. gitnexus_context({name: "processPayment"})
-   → Incoming: checkoutHandler, webhookHandler
-   → Outgoing: validateCard, chargeStripe, saveTransaction
-4. Read src/payments/processor.ts for implementation details
-```
+---
+name: gitnexus-exploring
+description: Navigate unfamiliar code using GitNexus knowledge graph
+---
+
+# Exploring Codebases with GitNexus
+
+## When to Use
+- "How does authentication work?"
+- "What's the project structure?"
+- "Show me the main components"
+- "Where is the database logic?"
+- Understanding code you haven't seen before
+
+## Workflow
+
+```
+1. READ gitnexus://repos                          → Discover indexed repos
+2. READ gitnexus://repo/{name}/context             → Codebase overview, check staleness
+3. gitnexus_query({query: "<what you want to understand>"})  → Find related execution flows
+4. gitnexus_context({name: "<symbol>"})            → Deep dive on specific symbol
+5. READ gitnexus://repo/{name}/process/{name}      → Trace full execution flow
+```
+
+> If step 2 says "Index is stale" → run `npx gitnexus analyze` in terminal.
+
+## Checklist
+
+```
+- [ ] READ gitnexus://repo/{name}/context
+- [ ] gitnexus_query for the concept you want to understand
+- [ ] Review returned processes (execution flows)
+- [ ] gitnexus_context on key symbols for callers/callees
+- [ ] READ process resource for full execution traces
+- [ ] Read source files for implementation details
+```
+
+## Resources
+
+| Resource | What you get |
+|----------|-------------|
+| `gitnexus://repo/{name}/context` | Stats, staleness warning (~150 tokens) |
+| `gitnexus://repo/{name}/clusters` | All functional areas with cohesion scores (~300 tokens) |
+| `gitnexus://repo/{name}/cluster/{name}` | Area members with file paths (~500 tokens) |
+| `gitnexus://repo/{name}/process/{name}` | Step-by-step execution trace (~200 tokens) |
+
+## Tools
+
+**gitnexus_query** — find execution flows related to a concept:
+```
+gitnexus_query({query: "payment processing"})
+→ Processes: CheckoutFlow, RefundFlow, WebhookHandler
+→ Symbols grouped by flow with file locations
+```
+
+**gitnexus_context** — 360-degree view of a symbol:
+```
+gitnexus_context({name: "validateUser"})
+→ Incoming calls: loginHandler, apiMiddleware
+→ Outgoing calls: checkToken, getUserById
+→ Processes: LoginFlow (step 2/5), TokenRefresh (step 1/3)
+```
+
+## Example: "How does payment processing work?"
+
+```
+1. READ gitnexus://repo/my-app/context       → 918 symbols, 45 processes
+2. gitnexus_query({query: "payment processing"})
+   → CheckoutFlow: processPayment → validateCard → chargeStripe
+   → RefundFlow: initiateRefund → calculateRefund → processRefund
+3. gitnexus_context({name: "processPayment"})
+   → Incoming: checkoutHandler, webhookHandler
+   → Outgoing: validateCard, chargeStripe, saveTransaction
+4. Read src/payments/processor.ts for implementation details
+```