npm - github-issue-tower-defence-management - Versions diffs - 1.126.2 → 1.126.3 - Mend

github-issue-tower-defence-management 1.126.2 → 1.126.3

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (21) hide show

package/CHANGELOG.md CHANGED Viewed

@@ -1,3 +1,10 @@
+## [1.126.3](https://github.com/HiromiShikata/npm-cli-github-issue-tower-defence-management/compare/v1.126.2...v1.126.3) (2026-07-22)
+### Bug Fixes
+* **silent-monitor:** compute main-session last activity from the last assistant line only ([#1242](https://github.com/HiromiShikata/npm-cli-github-issue-tower-defence-management/issues/1242)) ([1f11221](https://github.com/HiromiShikata/npm-cli-github-issue-tower-defence-management/commit/1f11221dc8ef8d8c3c2c137e1b728297ccb4ddf2)), closes [#1241](https://github.com/HiromiShikata/npm-cli-github-issue-tower-defence-management/issues/1241) [#1241](https://github.com/HiromiShikata/npm-cli-github-issue-tower-defence-management/issues/1241) [#1241](https://github.com/HiromiShikata/npm-cli-github-issue-tower-defence-management/issues/1241)
 ## [1.126.2](https://github.com/HiromiShikata/npm-cli-github-issue-tower-defence-management/compare/v1.126.1...v1.126.2) (2026-07-20)

package/bin/adapter/repositories/FileSystemSessionOutputActivityRepository.js CHANGED Viewed

@@ -47,37 +47,42 @@ const parseEpochMilliseconds = (timestamp) => {
     const parsed = Date.parse(timestamp);
     return Number.isNaN(parsed) ? null : parsed;
 };
-/**
- * Reads the last main-session activity time for each live session from its
- * already-resolved transcript path. Idle time is computed from the timestamp of
- * the latest entry of any kind (assistant text, owner replies, tool results, or
- * any other entry type) rather than from the transcript file modification time.
- * Because a session that is actively running tool calls keeps appending entries
- * such as `user` and `tool_result` even while it emits no assistant text, every
- * entry with a parseable timestamp counts as activity, so a working session is
- * not mistaken for a silent one.
- */
+const readContentBlocks = (message) => {
+    const content = message.content;
+    if (!Array.isArray(content)) {
+        return [];
+    }
+    return content.filter(isRecord);
+};
 class FileSystemSessionOutputActivityRepository {
     constructor() {
         this.listSessionOutputActivities = async (transcriptPathBySessionName) => {
             const activities = [];
             for (const [sessionName, transcriptPath] of transcriptPathBySessionName) {
-                const lastOutputEpochSeconds = this.readLastActivityEpochSeconds(transcriptPath);
-                if (lastOutputEpochSeconds !== null) {
-                    activities.push({ sessionName, lastOutputEpochSeconds });
+                const { lastAssistantOutputEpochSeconds, hasInProgressToolCall } = this.readTranscriptActivity(transcriptPath);
+                if (lastAssistantOutputEpochSeconds !== null) {
+                    activities.push({
+                        sessionName,
+                        lastOutputEpochSeconds: lastAssistantOutputEpochSeconds,
+                        hasInProgressToolCall,
+                    });
                 }
             }
             return activities;
         };
-        this.readLastActivityEpochSeconds = (transcriptPath) => {
+        this.readTranscriptActivity = (transcriptPath) => {
             let content;
             try {
                 content = fs.readFileSync(transcriptPath, 'utf8');
             }
             catch {
-                return null;
+                return {
+                    lastAssistantOutputEpochSeconds: null,
+                    hasInProgressToolCall: false,
+                };
             }
-            let lastActivityEpochMs = null;
+            let lastAssistantOutputEpochMs = null;
+            const pendingToolUseIds = new Set();
             for (const line of content.split('\n')) {
                 const trimmed = line.trim();
                 if (trimmed.length === 0) {
@@ -93,18 +98,38 @@ class FileSystemSessionOutputActivityRepository {
                 if (!isRecord(parsed)) {
                     continue;
                 }
-                const epochMs = parseEpochMilliseconds(readString(parsed, 'timestamp'));
-                if (epochMs === null) {
+                const message = parsed.message;
+                if (readString(parsed, 'type') === 'assistant') {
+                    const epochMs = parseEpochMilliseconds(readString(parsed, 'timestamp'));
+                    if (epochMs !== null) {
+                        lastAssistantOutputEpochMs = epochMs;
+                    }
+                }
+                if (!isRecord(message)) {
                     continue;
                 }
-                if (lastActivityEpochMs === null || epochMs > lastActivityEpochMs) {
-                    lastActivityEpochMs = epochMs;
+                for (const block of readContentBlocks(message)) {
+                    const blockType = readString(block, 'type');
+                    if (blockType === 'tool_use') {
+                        const toolUseId = readString(block, 'id');
+                        if (toolUseId !== null) {
+                            pendingToolUseIds.add(toolUseId);
+                        }
+                    }
+                    else if (blockType === 'tool_result') {
+                        const toolUseId = readString(block, 'tool_use_id');
+                        if (toolUseId !== null) {
+                            pendingToolUseIds.delete(toolUseId);
+                        }
+                    }
                 }
             }
-            if (lastActivityEpochMs === null) {
-                return null;
-            }
-            return Math.floor(lastActivityEpochMs / 1000);
+            return {
+                lastAssistantOutputEpochSeconds: lastAssistantOutputEpochMs === null
+                    ? null
+                    : Math.floor(lastAssistantOutputEpochMs / 1000),
+                hasInProgressToolCall: pendingToolUseIds.size > 0,
+            };
         };
     }
 }

package/bin/adapter/repositories/FileSystemSessionOutputActivityRepository.js.map CHANGED Viewed

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package/bin/domain/usecases/NotifySilentLiveSessionsUseCase.js CHANGED Viewed

@@ -1,6 +1,6 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.NotifySilentLiveSessionsUseCase = exports.isGitHubIssueOrPullRequestSessionName = exports.parseHubTaskIssueUrlFromSessionName = exports.DEFAULT_HUB_TASK_STATUS_CACHE_TTL_SECONDS = exports.DEFAULT_CANDIDATE_DEBOUNCE_RECENCY_WINDOW_SECONDS = exports.DEFAULT_NOTIFICATION_STAGGER_SECONDS = exports.DEFAULT_SUBAGENT_RUNNING_THRESHOLD_SECONDS = exports.DEFAULT_SUBAGENT_SILENT_THRESHOLD_SECONDS = exports.DEFAULT_UNANSWERED_OWNER_CALL_GRACE_SECONDS = exports.DEFAULT_MAIN_SILENT_THRESHOLD_SECONDS = void 0;
+exports.NotifySilentLiveSessionsUseCase = exports.isGitHubIssueOrPullRequestSessionName = exports.parseHubTaskIssueUrlFromSessionName = exports.IN_PROGRESS_TOOL_CALL_MAX_SUPPRESS_SECONDS = exports.DEFAULT_HUB_TASK_STATUS_CACHE_TTL_SECONDS = exports.DEFAULT_CANDIDATE_DEBOUNCE_RECENCY_WINDOW_SECONDS = exports.DEFAULT_NOTIFICATION_STAGGER_SECONDS = exports.DEFAULT_SUBAGENT_RUNNING_THRESHOLD_SECONDS = exports.DEFAULT_SUBAGENT_SILENT_THRESHOLD_SECONDS = exports.DEFAULT_UNANSWERED_OWNER_CALL_GRACE_SECONDS = exports.DEFAULT_MAIN_SILENT_THRESHOLD_SECONDS = void 0;
 const ResolveInteractiveLiveSessionsUseCase_1 = require("./ResolveInteractiveLiveSessionsUseCase");
 exports.DEFAULT_MAIN_SILENT_THRESHOLD_SECONDS = 10 * 60;
 // Retained only for backward compatibility of the configuration surface
@@ -13,6 +13,15 @@ exports.DEFAULT_SUBAGENT_RUNNING_THRESHOLD_SECONDS = 15 * 60;
 exports.DEFAULT_NOTIFICATION_STAGGER_SECONDS = 25;
 exports.DEFAULT_CANDIDATE_DEBOUNCE_RECENCY_WINDOW_SECONDS = 15 * 60;
 exports.DEFAULT_HUB_TASK_STATUS_CACHE_TTL_SECONDS = 5 * 60;
+// Upper bound on how long an in-progress tool call suppresses the main-stall
+// reminder. Set to 2 hours: comfortably above the ~1-hour maximum duration of
+// the longest legitimate single tool call (the Monitor tool's own timeout
+// ceiling), so every legitimate long-running tool call is still suppressed,
+// while a session whose transcript tail has been an unanswered tool_use for
+// longer than this — for example because the tool call itself hung and never
+// returned — still receives the stall reminder instead of being suppressed
+// forever.
+exports.IN_PROGRESS_TOOL_CALL_MAX_SUPPRESS_SECONDS = 2 * 60 * 60;
 const GITHUB_ISSUE_OR_PULL_URL_PATTERN = /^https:\/\/github\.com\/([^/]+)\/([^/]+)\/(?:issues|pull)\/(\d+)$/;
 const GITHUB_TMUX_SESSION_NAME_PATTERN = /^https_\/\/github_com\/([^/]+)\/([^/]+)\/(?:issues|pull)\/(\d+)$/;
 const parseHubTaskIssueUrlFromSessionName = (sessionName) => {
@@ -184,8 +193,10 @@ class NotifySilentLiveSessionsUseCase {
             const sessionNames = interactiveSessions.map((session) => session.sessionName);
             const activities = await this.sessionOutputActivityRepository.listSessionOutputActivities(transcriptPathBySessionName);
             const lastOutputBySessionName = new Map();
+            const inProgressToolCallBySessionName = new Map();
             for (const activity of activities) {
                 lastOutputBySessionName.set(activity.sessionName, activity.lastOutputEpochSeconds);
+                inProgressToolCallBySessionName.set(activity.sessionName, activity.hasInProgressToolCall);
             }
             const subAgentsBySessionName = await this.subAgentActivityRepository.listSubAgentActivitiesBySessionName(sessionNames, transcriptPathBySessionName);
             const unansweredOwnerCallEpochSecondsBySessionName = await this.ownerCallStatusProvider.listUnansweredOwnerCallEpochSecondsBySessionName(transcriptPathBySessionName);
@@ -199,6 +210,7 @@ class NotifySilentLiveSessionsUseCase {
                 return {
                     sessionName,
                     mainSilentSeconds,
+                    mainHasInProgressToolCall: inProgressToolCallBySessionName.get(sessionName) ?? false,
                     subAgents: subAgentsBySessionName.get(sessionName) ?? [],
                     unansweredOwnerCallAgeSeconds: unansweredOwnerCallEpochSeconds === undefined
                         ? null
@@ -220,9 +232,28 @@ class NotifySilentLiveSessionsUseCase {
             // is retained in the parameters only for backward compatibility of the
             // call signature and is intentionally ignored (treated as infinite).
             const suppressedByUnansweredOwnerCall = unansweredOwnerCallAgeSeconds !== null;
+            // A session whose transcript tail is an assistant tool_use with no matching
+            // tool_result is legitimately busy running one long tool call (e.g. a Bash
+            // command near its timeout, or a Monitor waiting up to an hour): it appends
+            // no new assistant line while the tool runs, so mainSilentSeconds crosses
+            // the threshold even though the session is working, not stalled. Suppress
+            // the main-stall reminder in that case. Genuine thrashing silence — where
+            // the last assistant tool_use was already answered (or there is none) — has
+            // no pending tool call and is still flagged.
+            // The suppression is bounded by the pending tool call's own age
+            // (mainSilentSeconds, which for an in-progress tool call equals the age of
+            // the pending tool_use line) so it cannot last forever: a session stuck
+            // inside a tool call that never returns is reminded once that age exceeds
+            // IN_PROGRESS_TOOL_CALL_MAX_SUPPRESS_SECONDS, restoring the ~10-minute
+            // stall reminder for a truly hung session instead of suppressing it
+            // indefinitely.
+            const suppressedByInProgressToolCall = snapshot.mainHasInProgressToolCall &&
+                mainSilentSeconds !== null &&
+                mainSilentSeconds < exports.IN_PROGRESS_TOOL_CALL_MAX_SUPPRESS_SECONDS;
             const mainTriggered = mainSilentSeconds !== null &&
                 mainSilentSeconds >= thresholds.mainSilentThresholdSeconds &&
-                !suppressedByUnansweredOwnerCall;
+                !suppressedByUnansweredOwnerCall &&
+                !suppressedByInProgressToolCall;
             if (mainTriggered) {
                 sections.push(this.messageComposer.composeMainStalledSection(mainSilentSeconds));
                 sectionLabels.push('main-stalled');

package/bin/domain/usecases/NotifySilentLiveSessionsUseCase.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/package.json CHANGED Viewed

@@ -1,6 +1,6 @@
 {
   "name": "github-issue-tower-defence-management",
-  "version": "1.126.2",
+  "version": "1.126.3",
   "description": "",
   "main": "bin/index.js",
   "scripts": {
@@ -65,7 +65,7 @@
     "@testing-library/react": "16.3.2",
     "@jest/globals": "^29.7.0",
     "@types/better-sqlite3": "7.6.13",
-    "@types/jest": "^29.5.12",
+    "@types/jest": "^30.0.0",
     "@types/node": "^20.5.1",
     "@types/react": "^19.1.0",
     "@types/react-dom": "^19.1.0",
@@ -82,8 +82,8 @@
     "eslint": "^10.5.0",
     "eslint-plugin-import-x": "^4.0.0",
     "eslint-plugin-unused-imports": "^4.4.1",
-    "jest": "^29.7.0",
-    "jest-environment-jsdom": "29.7.0",
+    "jest": "^30.4.2",
+    "jest-environment-jsdom": "30.4.1",
     "jest-html-reporter": "^4.4.0",
     "jest-junit": "^17.0.0",
     "jest-mock-extended": "^4.0.0-beta1",

package/src/adapter/entry-points/console/ui/src/features/console/hooks/useConsoleOperations.test.ts CHANGED Viewed

@@ -36,8 +36,11 @@ const captureFetch = (): jest.Mock => {
   return fetchMock;
 };
-const lastBody = (fetchMock: jest.Mock): Record<string, unknown> =>
-  JSON.parse((fetchMock.mock.calls.at(-1)?.[1] as { body: string }).body);
+const lastBody = (fetchMock: jest.Mock): Record<string, unknown> => {
+  const lastCall = fetchMock.mock.calls.at(-1);
+  if (!lastCall) throw new Error('No fetch calls found');
+  return JSON.parse((lastCall[1] as { body: string }).body);
+};
 const setup = () => {
   localStorage.clear();

package/src/adapter/repositories/FileSystemSessionOutputActivityRepository.test.ts CHANGED Viewed

@@ -25,6 +25,14 @@ describe('FileSystemSessionOutputActivityRepository', () => {
     },
   });
+  const assistantEntryWithoutTimestamp = (): object => ({
+    type: 'assistant',
+    message: {
+      role: 'assistant',
+      content: [{ type: 'text', text: 'no timestamp on this entry' }],
+    },
+  });
   const userEntry = (timestamp: string): object => ({
     type: 'user',
     timestamp,
@@ -37,6 +45,51 @@ describe('FileSystemSessionOutputActivityRepository', () => {
     toolUseResult: { stdout: 'done', stderr: '' },
   });
+  const systemEntry = (timestamp: string): object => ({
+    type: 'system',
+    timestamp,
+    content: 'Compacting conversation history',
+  });
+  const assistantEntryWithToolUse = (
+    timestamp: string,
+    toolUseId: string,
+  ): object => ({
+    type: 'assistant',
+    timestamp,
+    message: {
+      role: 'assistant',
+      stop_reason: 'tool_use',
+      content: [
+        { type: 'text', text: 'running a command' },
+        {
+          type: 'tool_use',
+          id: toolUseId,
+          name: 'Bash',
+          input: { command: 'sleep 590' },
+        },
+      ],
+    },
+  });
+  const toolResultUserEntry = (
+    timestamp: string,
+    toolUseId: string,
+  ): object => ({
+    type: 'user',
+    timestamp,
+    message: {
+      role: 'user',
+      content: [
+        {
+          type: 'tool_result',
+          tool_use_id: toolUseId,
+          content: 'done',
+        },
+      ],
+    },
+  });
   const untimestampedEntry = (): object => ({
     type: 'summary',
     summary: 'no timestamp on this entry',
@@ -52,11 +105,56 @@ describe('FileSystemSessionOutputActivityRepository', () => {
     return filePath;
   };
-  it('returns the latest entry timestamp of any type as the last activity epoch', async () => {
+  it('returns the old last-assistant timestamp when recent system and tool entries follow it', async () => {
+    const transcriptPath = writeTranscript('thrashing.jsonl', [
+      assistantEntry('2026-06-27T01:00:00.000Z'),
+      systemEntry('2026-06-27T09:30:00.000Z'),
+      toolResultEntry('2026-06-27T09:45:00.000Z'),
+      systemEntry('2026-06-27T10:00:00.000Z'),
+    ]);
+    const repository = new FileSystemSessionOutputActivityRepository();
+    const result = await repository.listSessionOutputActivities(
+      new Map([['thrashing', transcriptPath]]),
+    );
+    expect(result).toEqual([
+      {
+        sessionName: 'thrashing',
+        lastOutputEpochSeconds: Math.floor(
+          Date.parse('2026-06-27T01:00:00.000Z') / 1000,
+        ),
+        hasInProgressToolCall: false,
+      },
+    ]);
+  });
+  it('returns the recent timestamp when the latest assistant entry is recent', async () => {
+    const transcriptPath = writeTranscript('working.jsonl', [
+      userEntry('2026-06-27T09:00:00.000Z'),
+      assistantEntry('2026-06-27T09:55:00.000Z'),
+    ]);
+    const repository = new FileSystemSessionOutputActivityRepository();
+    const result = await repository.listSessionOutputActivities(
+      new Map([['working', transcriptPath]]),
+    );
+    expect(result).toEqual([
+      {
+        sessionName: 'working',
+        lastOutputEpochSeconds: Math.floor(
+          Date.parse('2026-06-27T09:55:00.000Z') / 1000,
+        ),
+        hasInProgressToolCall: false,
+      },
+    ]);
+  });
+  it('ignores a later user entry and returns the last assistant timestamp', async () => {
     const transcriptPath = writeTranscript('workbench.jsonl', [
       assistantEntry('2026-06-27T10:00:00.000Z'),
-      userEntry('2026-06-27T10:30:00.000Z'),
-      assistantEntry('2026-06-27T10:05:00.000Z'),
+      userEntry('2026-06-27T11:00:00.000Z'),
     ]);
     const repository = new FileSystemSessionOutputActivityRepository();
@@ -68,16 +166,41 @@ describe('FileSystemSessionOutputActivityRepository', () => {
       {
         sessionName: 'workbench',
         lastOutputEpochSeconds: Math.floor(
-          Date.parse('2026-06-27T10:30:00.000Z') / 1000,
+          Date.parse('2026-06-27T10:00:00.000Z') / 1000,
         ),
+        hasInProgressToolCall: false,
       },
     ]);
   });
-  it('advances the last activity time when a later user entry follows an assistant entry', async () => {
+  it('ignores a later tool_result entry and returns the last assistant timestamp', async () => {
     const transcriptPath = writeTranscript('workbench.jsonl', [
       assistantEntry('2026-06-27T10:00:00.000Z'),
-      userEntry('2026-06-27T11:00:00.000Z'),
+      toolResultEntry('2026-06-27T10:45:00.000Z'),
+    ]);
+    const repository = new FileSystemSessionOutputActivityRepository();
+    const result = await repository.listSessionOutputActivities(
+      new Map([['workbench', transcriptPath]]),
+    );
+    expect(result).toEqual([
+      {
+        sessionName: 'workbench',
+        lastOutputEpochSeconds: Math.floor(
+          Date.parse('2026-06-27T10:00:00.000Z') / 1000,
+        ),
+        hasInProgressToolCall: false,
+      },
+    ]);
+  });
+  it('returns the last assistant entry timestamp when several entry types interleave', async () => {
+    const transcriptPath = writeTranscript('workbench.jsonl', [
+      assistantEntry('2026-06-27T10:00:00.000Z'),
+      userEntry('2026-06-27T10:10:00.000Z'),
+      assistantEntry('2026-06-27T10:05:00.000Z'),
+      systemEntry('2026-06-27T10:40:00.000Z'),
     ]);
     const repository = new FileSystemSessionOutputActivityRepository();
@@ -89,16 +212,17 @@ describe('FileSystemSessionOutputActivityRepository', () => {
       {
         sessionName: 'workbench',
         lastOutputEpochSeconds: Math.floor(
-          Date.parse('2026-06-27T11:00:00.000Z') / 1000,
+          Date.parse('2026-06-27T10:05:00.000Z') / 1000,
         ),
+        hasInProgressToolCall: false,
       },
     ]);
   });
-  it('advances the last activity time when a tool_result entry is the latest entry', async () => {
+  it('falls back to the last assistant entry that has a parseable timestamp', async () => {
     const transcriptPath = writeTranscript('workbench.jsonl', [
       assistantEntry('2026-06-27T10:00:00.000Z'),
-      toolResultEntry('2026-06-27T10:45:00.000Z'),
+      assistantEntryWithoutTimestamp(),
     ]);
     const repository = new FileSystemSessionOutputActivityRepository();
@@ -110,8 +234,9 @@ describe('FileSystemSessionOutputActivityRepository', () => {
       {
         sessionName: 'workbench',
         lastOutputEpochSeconds: Math.floor(
-          Date.parse('2026-06-27T10:45:00.000Z') / 1000,
+          Date.parse('2026-06-27T10:00:00.000Z') / 1000,
         ),
+        hasInProgressToolCall: false,
       },
     ]);
   });
@@ -135,13 +260,29 @@ describe('FileSystemSessionOutputActivityRepository', () => {
         lastOutputEpochSeconds: Math.floor(
           Date.parse('2026-06-27T10:00:00.000Z') / 1000,
         ),
+        hasInProgressToolCall: false,
       },
     ]);
   });
-  it('resolves a transcript whose only entry is a non-assistant entry', async () => {
+  it('omits a transcript whose only entries are non-assistant entries', async () => {
     const transcriptPath = writeTranscript('workbench.jsonl', [
       userEntry('2026-06-27T10:00:00.000Z'),
+      toolResultEntry('2026-06-27T10:05:00.000Z'),
+      systemEntry('2026-06-27T10:10:00.000Z'),
+    ]);
+    const repository = new FileSystemSessionOutputActivityRepository();
+    const result = await repository.listSessionOutputActivities(
+      new Map([['workbench', transcriptPath]]),
+    );
+    expect(result).toEqual([]);
+  });
+  it('omits sessions whose transcript has no parseable timestamp', async () => {
+    const transcriptPath = writeTranscript('workbench.jsonl', [
+      untimestampedEntry(),
     ]);
     const repository = new FileSystemSessionOutputActivityRepository();
@@ -149,27 +290,51 @@ describe('FileSystemSessionOutputActivityRepository', () => {
       new Map([['workbench', transcriptPath]]),
     );
+    expect(result).toEqual([]);
+  });
+  it('flags a session as waiting on a running tool when the last assistant tool_use has no matching tool_result', async () => {
+    const transcriptPath = writeTranscript('busy.jsonl', [
+      assistantEntry('2026-06-27T09:00:00.000Z'),
+      assistantEntryWithToolUse('2026-06-27T09:01:00.000Z', 'toolu_running'),
+    ]);
+    const repository = new FileSystemSessionOutputActivityRepository();
+    const result = await repository.listSessionOutputActivities(
+      new Map([['busy', transcriptPath]]),
+    );
     expect(result).toEqual([
       {
-        sessionName: 'workbench',
+        sessionName: 'busy',
         lastOutputEpochSeconds: Math.floor(
-          Date.parse('2026-06-27T10:00:00.000Z') / 1000,
+          Date.parse('2026-06-27T09:01:00.000Z') / 1000,
         ),
+        hasInProgressToolCall: true,
       },
     ]);
   });
-  it('omits sessions whose transcript has no parseable timestamp', async () => {
-    const transcriptPath = writeTranscript('workbench.jsonl', [
-      untimestampedEntry(),
+  it('does not flag a session once the matching tool_result for its last tool_use is appended', async () => {
+    const transcriptPath = writeTranscript('completed.jsonl', [
+      assistantEntryWithToolUse('2026-06-27T09:01:00.000Z', 'toolu_done'),
+      toolResultUserEntry('2026-06-27T09:05:00.000Z', 'toolu_done'),
     ]);
     const repository = new FileSystemSessionOutputActivityRepository();
     const result = await repository.listSessionOutputActivities(
-      new Map([['workbench', transcriptPath]]),
+      new Map([['completed', transcriptPath]]),
     );
-    expect(result).toEqual([]);
+    expect(result).toEqual([
+      {
+        sessionName: 'completed',
+        lastOutputEpochSeconds: Math.floor(
+          Date.parse('2026-06-27T09:01:00.000Z') / 1000,
+        ),
+        hasInProgressToolCall: false,
+      },
+    ]);
   });
   it('returns an empty list when no sessions are requested', async () => {

package/src/adapter/repositories/FileSystemSessionOutputActivityRepository.ts CHANGED Viewed

@@ -21,41 +21,54 @@ const parseEpochMilliseconds = (timestamp: string | null): number | null => {
   return Number.isNaN(parsed) ? null : parsed;
 };
-/**
- * Reads the last main-session activity time for each live session from its
- * already-resolved transcript path. Idle time is computed from the timestamp of
- * the latest entry of any kind (assistant text, owner replies, tool results, or
- * any other entry type) rather than from the transcript file modification time.
- * Because a session that is actively running tool calls keeps appending entries
- * such as `user` and `tool_result` even while it emits no assistant text, every
- * entry with a parseable timestamp counts as activity, so a working session is
- * not mistaken for a silent one.
- */
+const readContentBlocks = (
+  message: Record<string, unknown>,
+): Record<string, unknown>[] => {
+  const content = message.content;
+  if (!Array.isArray(content)) {
+    return [];
+  }
+  return content.filter(isRecord);
+};
+type TranscriptActivity = {
+  lastAssistantOutputEpochSeconds: number | null;
+  hasInProgressToolCall: boolean;
+};
 export class FileSystemSessionOutputActivityRepository implements SessionOutputActivityRepository {
   listSessionOutputActivities = async (
     transcriptPathBySessionName: Map<string, string>,
   ): Promise<LiveSessionOutputActivity[]> => {
     const activities: LiveSessionOutputActivity[] = [];
     for (const [sessionName, transcriptPath] of transcriptPathBySessionName) {
-      const lastOutputEpochSeconds =
-        this.readLastActivityEpochSeconds(transcriptPath);
-      if (lastOutputEpochSeconds !== null) {
-        activities.push({ sessionName, lastOutputEpochSeconds });
+      const { lastAssistantOutputEpochSeconds, hasInProgressToolCall } =
+        this.readTranscriptActivity(transcriptPath);
+      if (lastAssistantOutputEpochSeconds !== null) {
+        activities.push({
+          sessionName,
+          lastOutputEpochSeconds: lastAssistantOutputEpochSeconds,
+          hasInProgressToolCall,
+        });
       }
     }
     return activities;
   };
-  private readLastActivityEpochSeconds = (
+  private readTranscriptActivity = (
     transcriptPath: string,
-  ): number | null => {
+  ): TranscriptActivity => {
     let content: string;
     try {
       content = fs.readFileSync(transcriptPath, 'utf8');
     } catch {
-      return null;
+      return {
+        lastAssistantOutputEpochSeconds: null,
+        hasInProgressToolCall: false,
+      };
     }
-    let lastActivityEpochMs: number | null = null;
+    let lastAssistantOutputEpochMs: number | null = null;
+    const pendingToolUseIds = new Set<string>();
     for (const line of content.split('\n')) {
       const trimmed = line.trim();
       if (trimmed.length === 0) {
@@ -70,17 +83,37 @@ export class FileSystemSessionOutputActivityRepository implements SessionOutputA
       if (!isRecord(parsed)) {
         continue;
       }
-      const epochMs = parseEpochMilliseconds(readString(parsed, 'timestamp'));
-      if (epochMs === null) {
+      const message = parsed.message;
+      if (readString(parsed, 'type') === 'assistant') {
+        const epochMs = parseEpochMilliseconds(readString(parsed, 'timestamp'));
+        if (epochMs !== null) {
+          lastAssistantOutputEpochMs = epochMs;
+        }
+      }
+      if (!isRecord(message)) {
         continue;
       }
-      if (lastActivityEpochMs === null || epochMs > lastActivityEpochMs) {
-        lastActivityEpochMs = epochMs;
+      for (const block of readContentBlocks(message)) {
+        const blockType = readString(block, 'type');
+        if (blockType === 'tool_use') {
+          const toolUseId = readString(block, 'id');
+          if (toolUseId !== null) {
+            pendingToolUseIds.add(toolUseId);
+          }
+        } else if (blockType === 'tool_result') {
+          const toolUseId = readString(block, 'tool_use_id');
+          if (toolUseId !== null) {
+            pendingToolUseIds.delete(toolUseId);
+          }
+        }
       }
     }
-    if (lastActivityEpochMs === null) {
-      return null;
-    }
-    return Math.floor(lastActivityEpochMs / 1000);
+    return {
+      lastAssistantOutputEpochSeconds:
+        lastAssistantOutputEpochMs === null
+          ? null
+          : Math.floor(lastAssistantOutputEpochMs / 1000),
+      hasInProgressToolCall: pendingToolUseIds.size > 0,
+    };
   };
 }

package/src/domain/entities/LiveSessionActivitySnapshot.ts CHANGED Viewed

@@ -8,6 +8,7 @@ export type SubAgentActivity = {
 export type LiveSessionActivitySnapshot = {
   sessionName: string;
   mainSilentSeconds: number | null;
+  mainHasInProgressToolCall: boolean;
   subAgents: SubAgentActivity[];
   unansweredOwnerCallAgeSeconds: number | null;
 };

package/src/domain/entities/LiveSessionOutputActivity.ts CHANGED Viewed

@@ -1,4 +1,5 @@
 export type LiveSessionOutputActivity = {
   sessionName: string;
   lastOutputEpochSeconds: number;
+  hasInProgressToolCall: boolean;
 };

package/src/domain/usecases/NotifySilentLiveSessionsUseCase.test.ts CHANGED Viewed

@@ -10,6 +10,7 @@ import {
   DEFAULT_NOTIFICATION_STAGGER_SECONDS,
   DEFAULT_CANDIDATE_DEBOUNCE_RECENCY_WINDOW_SECONDS,
   DEFAULT_HUB_TASK_STATUS_CACHE_TTL_SECONDS,
+  IN_PROGRESS_TOOL_CALL_MAX_SUPPRESS_SECONDS,
 } from './NotifySilentLiveSessionsUseCase';
 import { Issue } from '../entities/Issue';
 import { LiveSessionProcessSnapshotProvider } from './adapter-interfaces/LiveSessionProcessSnapshotProvider';
@@ -244,6 +245,7 @@ describe('NotifySilentLiveSessionsUseCase', () => {
           sessionName,
           lastOutputEpochSeconds:
             nowEpochSeconds - DEFAULT_MAIN_SILENT_THRESHOLD_SECONDS,
+          hasInProgressToolCall: false,
         },
       ],
     );
@@ -274,6 +276,7 @@ describe('NotifySilentLiveSessionsUseCase', () => {
           sessionName: GITHUB_SESSION,
           lastOutputEpochSeconds:
             nowEpochSeconds - DEFAULT_MAIN_SILENT_THRESHOLD_SECONDS,
+          hasInProgressToolCall: false,
         },
       ],
     );
@@ -297,6 +300,7 @@ describe('NotifySilentLiveSessionsUseCase', () => {
           sessionName: pullRequestSession,
           lastOutputEpochSeconds:
             nowEpochSeconds - DEFAULT_MAIN_SILENT_THRESHOLD_SECONDS,
+          hasInProgressToolCall: false,
         },
       ],
     );
@@ -318,6 +322,7 @@ describe('NotifySilentLiveSessionsUseCase', () => {
           sessionName: 'workbench',
           lastOutputEpochSeconds:
             nowEpochSeconds - DEFAULT_MAIN_SILENT_THRESHOLD_SECONDS,
+          hasInProgressToolCall: false,
         },
       ],
     );
@@ -351,11 +356,13 @@ describe('NotifySilentLiveSessionsUseCase', () => {
           sessionName: GITHUB_SESSION,
           lastOutputEpochSeconds:
             nowEpochSeconds - DEFAULT_MAIN_SILENT_THRESHOLD_SECONDS,
+          hasInProgressToolCall: false,
         },
         {
           sessionName: 'orchestrator',
           lastOutputEpochSeconds:
             nowEpochSeconds - DEFAULT_MAIN_SILENT_THRESHOLD_SECONDS,
+          hasInProgressToolCall: false,
         },
       ],
     );
@@ -471,6 +478,7 @@ describe('NotifySilentLiveSessionsUseCase', () => {
           sessionName: GITHUB_SESSION,
           lastOutputEpochSeconds:
             nowEpochSeconds - DEFAULT_MAIN_SILENT_THRESHOLD_SECONDS + 1,
+          hasInProgressToolCall: false,
         },
       ],
     );
@@ -498,6 +506,7 @@ describe('NotifySilentLiveSessionsUseCase', () => {
           sessionName: GITHUB_SESSION,
           lastOutputEpochSeconds:
             nowEpochSeconds - DEFAULT_MAIN_SILENT_THRESHOLD_SECONDS,
+          hasInProgressToolCall: false,
         },
       ],
     );
@@ -518,6 +527,59 @@ describe('NotifySilentLiveSessionsUseCase', () => {
     ).toHaveBeenCalledWith(GITHUB_SESSION, MAIN_STALLED_SECTION);
   });
+  it('does not send the main stalled section when the session is silent past the threshold but is waiting on a running tool call', async () => {
+    setupLiveInteractiveSession(GITHUB_SESSION);
+    mockSessionOutputActivityRepository.listSessionOutputActivities.mockResolvedValue(
+      [
+        {
+          sessionName: GITHUB_SESSION,
+          lastOutputEpochSeconds:
+            nowEpochSeconds - DEFAULT_MAIN_SILENT_THRESHOLD_SECONDS,
+          hasInProgressToolCall: true,
+        },
+      ],
+    );
+    mockOwnerCallStatusProvider.listUnansweredOwnerCallEpochSecondsBySessionName.mockResolvedValue(
+      new Map<string, number>(),
+    );
+    await useCase.run(runParams());
+    expect(
+      mockMessageComposer.composeMainStalledSection,
+    ).not.toHaveBeenCalled();
+    expect(
+      mockNotificationRepository.sendSelfCheckNotification,
+    ).not.toHaveBeenCalled();
+  });
+  it('sends the main stalled section when the in-progress tool call has been pending longer than the suppression bound', async () => {
+    setupLiveInteractiveSession(GITHUB_SESSION);
+    const pendingToolCallAgeSeconds =
+      IN_PROGRESS_TOOL_CALL_MAX_SUPPRESS_SECONDS + 60 * 60;
+    mockSessionOutputActivityRepository.listSessionOutputActivities.mockResolvedValue(
+      [
+        {
+          sessionName: GITHUB_SESSION,
+          lastOutputEpochSeconds: nowEpochSeconds - pendingToolCallAgeSeconds,
+          hasInProgressToolCall: true,
+        },
+      ],
+    );
+    mockOwnerCallStatusProvider.listUnansweredOwnerCallEpochSecondsBySessionName.mockResolvedValue(
+      new Map<string, number>(),
+    );
+    await useCase.run(runParams());
+    expect(mockMessageComposer.composeMainStalledSection).toHaveBeenCalledWith(
+      pendingToolCallAgeSeconds,
+    );
+    expect(
+      mockNotificationRepository.sendSelfCheckNotification,
+    ).toHaveBeenCalledWith(GITHUB_SESSION, MAIN_STALLED_SECTION);
+  });
   it('does not send the main stalled section when output is within the threshold', async () => {
     setupLiveInteractiveSession(GITHUB_SESSION);
     mockSessionOutputActivityRepository.listSessionOutputActivities.mockResolvedValue(
@@ -526,6 +588,7 @@ describe('NotifySilentLiveSessionsUseCase', () => {
           sessionName: GITHUB_SESSION,
           lastOutputEpochSeconds:
             nowEpochSeconds - DEFAULT_MAIN_SILENT_THRESHOLD_SECONDS + 1,
+          hasInProgressToolCall: false,
         },
       ],
     );
@@ -651,6 +714,7 @@ describe('NotifySilentLiveSessionsUseCase', () => {
           sessionName: GITHUB_SESSION,
           lastOutputEpochSeconds:
             nowEpochSeconds - DEFAULT_MAIN_SILENT_THRESHOLD_SECONDS,
+          hasInProgressToolCall: false,
         },
       ],
     );
@@ -678,6 +742,7 @@ describe('NotifySilentLiveSessionsUseCase', () => {
             sessionName: GITHUB_SESSION,
             lastOutputEpochSeconds:
               nowEpochSeconds - DEFAULT_MAIN_SILENT_THRESHOLD_SECONDS,
+            hasInProgressToolCall: false,
           },
         ],
       );
@@ -944,11 +1009,13 @@ describe('NotifySilentLiveSessionsUseCase', () => {
           sessionName: GITHUB_SESSION_ALPHA,
           lastOutputEpochSeconds:
             nowEpochSeconds - DEFAULT_MAIN_SILENT_THRESHOLD_SECONDS,
+          hasInProgressToolCall: false,
         },
         {
           sessionName: GITHUB_SESSION_BRAVO,
           lastOutputEpochSeconds:
             nowEpochSeconds - DEFAULT_MAIN_SILENT_THRESHOLD_SECONDS,
+          hasInProgressToolCall: false,
         },
       ],
     );
@@ -984,6 +1051,7 @@ describe('NotifySilentLiveSessionsUseCase', () => {
           sessionName: GITHUB_SESSION,
           lastOutputEpochSeconds:
             nowEpochSeconds - DEFAULT_MAIN_SILENT_THRESHOLD_SECONDS,
+          hasInProgressToolCall: false,
         },
       ],
     );
@@ -1525,11 +1593,13 @@ describe('NotifySilentLiveSessionsUseCase', () => {
             sessionName: GITHUB_SESSION_ALPHA,
             lastOutputEpochSeconds:
               nowEpochSeconds - DEFAULT_MAIN_SILENT_THRESHOLD_SECONDS,
+            hasInProgressToolCall: false,
           },
           {
             sessionName: GITHUB_SESSION_BRAVO,
             lastOutputEpochSeconds:
               nowEpochSeconds - DEFAULT_MAIN_SILENT_THRESHOLD_SECONDS,
+            hasInProgressToolCall: false,
           },
         ],
       );

package/src/domain/usecases/NotifySilentLiveSessionsUseCase.ts CHANGED Viewed

@@ -25,6 +25,15 @@ export const DEFAULT_SUBAGENT_RUNNING_THRESHOLD_SECONDS = 15 * 60;
 export const DEFAULT_NOTIFICATION_STAGGER_SECONDS = 25;
 export const DEFAULT_CANDIDATE_DEBOUNCE_RECENCY_WINDOW_SECONDS = 15 * 60;
 export const DEFAULT_HUB_TASK_STATUS_CACHE_TTL_SECONDS = 5 * 60;
+// Upper bound on how long an in-progress tool call suppresses the main-stall
+// reminder. Set to 2 hours: comfortably above the ~1-hour maximum duration of
+// the longest legitimate single tool call (the Monitor tool's own timeout
+// ceiling), so every legitimate long-running tool call is still suppressed,
+// while a session whose transcript tail has been an unanswered tool_use for
+// longer than this — for example because the tool call itself hung and never
+// returned — still receives the stall reminder instead of being suppressed
+// forever.
+export const IN_PROGRESS_TOOL_CALL_MAX_SUPPRESS_SECONDS = 2 * 60 * 60;
 const GITHUB_ISSUE_OR_PULL_URL_PATTERN =
   /^https:\/\/github\.com\/([^/]+)\/([^/]+)\/(?:issues|pull)\/(\d+)$/;
@@ -336,11 +345,16 @@ export class NotifySilentLiveSessionsUseCase {
         transcriptPathBySessionName,
       );
     const lastOutputBySessionName = new Map<string, number>();
+    const inProgressToolCallBySessionName = new Map<string, boolean>();
     for (const activity of activities) {
       lastOutputBySessionName.set(
         activity.sessionName,
         activity.lastOutputEpochSeconds,
       );
+      inProgressToolCallBySessionName.set(
+        activity.sessionName,
+        activity.hasInProgressToolCall,
+      );
     }
     const subAgentsBySessionName =
@@ -366,6 +380,8 @@ export class NotifySilentLiveSessionsUseCase {
       return {
         sessionName,
         mainSilentSeconds,
+        mainHasInProgressToolCall:
+          inProgressToolCallBySessionName.get(sessionName) ?? false,
         subAgents: subAgentsBySessionName.get(sessionName) ?? [],
         unansweredOwnerCallAgeSeconds:
           unansweredOwnerCallEpochSeconds === undefined
@@ -401,10 +417,30 @@ export class NotifySilentLiveSessionsUseCase {
     // call signature and is intentionally ignored (treated as infinite).
     const suppressedByUnansweredOwnerCall =
       unansweredOwnerCallAgeSeconds !== null;
+    // A session whose transcript tail is an assistant tool_use with no matching
+    // tool_result is legitimately busy running one long tool call (e.g. a Bash
+    // command near its timeout, or a Monitor waiting up to an hour): it appends
+    // no new assistant line while the tool runs, so mainSilentSeconds crosses
+    // the threshold even though the session is working, not stalled. Suppress
+    // the main-stall reminder in that case. Genuine thrashing silence — where
+    // the last assistant tool_use was already answered (or there is none) — has
+    // no pending tool call and is still flagged.
+    // The suppression is bounded by the pending tool call's own age
+    // (mainSilentSeconds, which for an in-progress tool call equals the age of
+    // the pending tool_use line) so it cannot last forever: a session stuck
+    // inside a tool call that never returns is reminded once that age exceeds
+    // IN_PROGRESS_TOOL_CALL_MAX_SUPPRESS_SECONDS, restoring the ~10-minute
+    // stall reminder for a truly hung session instead of suppressing it
+    // indefinitely.
+    const suppressedByInProgressToolCall =
+      snapshot.mainHasInProgressToolCall &&
+      mainSilentSeconds !== null &&
+      mainSilentSeconds < IN_PROGRESS_TOOL_CALL_MAX_SUPPRESS_SECONDS;
     const mainTriggered =
       mainSilentSeconds !== null &&
       mainSilentSeconds >= thresholds.mainSilentThresholdSeconds &&
-      !suppressedByUnansweredOwnerCall;
+      !suppressedByUnansweredOwnerCall &&
+      !suppressedByInProgressToolCall;
     if (mainTriggered) {
       sections.push(
         this.messageComposer.composeMainStalledSection(mainSilentSeconds),

package/types/adapter/repositories/FileSystemSessionOutputActivityRepository.d.ts CHANGED Viewed

@@ -1,17 +1,7 @@
 import { LiveSessionOutputActivity } from '../../domain/entities/LiveSessionOutputActivity';
 import { SessionOutputActivityRepository } from '../../domain/usecases/adapter-interfaces/SessionOutputActivityRepository';
-/**
- * Reads the last main-session activity time for each live session from its
- * already-resolved transcript path. Idle time is computed from the timestamp of
- * the latest entry of any kind (assistant text, owner replies, tool results, or
- * any other entry type) rather than from the transcript file modification time.
- * Because a session that is actively running tool calls keeps appending entries
- * such as `user` and `tool_result` even while it emits no assistant text, every
- * entry with a parseable timestamp counts as activity, so a working session is
- * not mistaken for a silent one.
- */
 export declare class FileSystemSessionOutputActivityRepository implements SessionOutputActivityRepository {
     listSessionOutputActivities: (transcriptPathBySessionName: Map<string, string>) => Promise<LiveSessionOutputActivity[]>;
-    private readLastActivityEpochSeconds;
+    private readTranscriptActivity;
 }
 //# sourceMappingURL=FileSystemSessionOutputActivityRepository.d.ts.map

package/types/adapter/repositories/FileSystemSessionOutputActivityRepository.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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package/types/domain/entities/LiveSessionActivitySnapshot.d.ts CHANGED Viewed

@@ -7,6 +7,7 @@ export type SubAgentActivity = {
 export type LiveSessionActivitySnapshot = {
     sessionName: string;
     mainSilentSeconds: number | null;
+    mainHasInProgressToolCall: boolean;
     subAgents: SubAgentActivity[];
     unansweredOwnerCallAgeSeconds: number | null;
 };

package/types/domain/entities/LiveSessionActivitySnapshot.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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package/types/domain/entities/LiveSessionOutputActivity.d.ts CHANGED Viewed

@@ -1,5 +1,6 @@
 export type LiveSessionOutputActivity = {
     sessionName: string;
     lastOutputEpochSeconds: number;
+    hasInProgressToolCall: boolean;
 };
 //# sourceMappingURL=LiveSessionOutputActivity.d.ts.map

package/types/domain/entities/LiveSessionOutputActivity.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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package/types/domain/usecases/NotifySilentLiveSessionsUseCase.d.ts CHANGED Viewed

@@ -17,6 +17,7 @@ export declare const DEFAULT_SUBAGENT_RUNNING_THRESHOLD_SECONDS: number;
 export declare const DEFAULT_NOTIFICATION_STAGGER_SECONDS = 25;
 export declare const DEFAULT_CANDIDATE_DEBOUNCE_RECENCY_WINDOW_SECONDS: number;
 export declare const DEFAULT_HUB_TASK_STATUS_CACHE_TTL_SECONDS: number;
+export declare const IN_PROGRESS_TOOL_CALL_MAX_SUPPRESS_SECONDS: number;
 export declare const parseHubTaskIssueUrlFromSessionName: (sessionName: string) => string | null;
 export declare const isGitHubIssueOrPullRequestSessionName: (sessionName: string) => boolean;
 export type HubTaskStatusResolver = Pick<IssueRepository, 'getIssueByUrl'>;

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