ghostrail 0.15.1 → 0.16.0

package/dist/store/file-store.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"file-store.d.ts","sourceRoot":"","sources":["../../src/store/file-store.ts"],"names":[],"mappings":"AAGA,OAAO,EAAkB,KAAK,QAAQ,EAAE,KAAK,MAAM,EAAwB,MAAM,aAAa,CAAC;AAC/F,OAAO,KAAK,EAAE,eAAe,EAAE,SAAS,EAAE,QAAQ,EAAE,MAAM,WAAW,CAAC;AAItE,YAAY,EAAE,eAAe,EAAE,SAAS,EAAE,MAAM,WAAW,CAAC;AAE5D;;;;;;;;;GASG;AACH,qBAAa,SAAU,YAAW,QAAQ;IACxC,+EAA+E;IAC/E,QAAQ,CAAC,GAAG,EAAE,MAAM,CAAC;IACrB,OAAO,CAAC,QAAQ,CAAC,UAAU,CAAS;IACpC,OAAO,CAAC,QAAQ,CAAC,OAAO,CAAS;IACjC,OAAO,CAAC,QAAQ,CAAC,YAAY,CAAS;gBAE1B,GAAG,EAAE,MAAM;IAOvB,IAAI,CAAC,KAAK,EAAE,QAAQ,GAAG,OAAO,CAAC,IAAI,CAAC;IAIpC,sDAAsD;IAChD,MAAM,CAAC,KAAK,EAAE,QAAQ,GAAG,OAAO,CAAC,IAAI,CAAC;IAWtC,MAAM,CAAC,KAAK,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,GAAG,SAAS,CAAC;IAQxD,8CAA8C;IACxC,QAAQ,CAAC,MAAM,GAAE,SAAc,GAAG,OAAO,CAAC,MAAM,EAAE,CAAC;IAyBzD,4EAA4E;IACtE,SAAS,CAAC,KAAK,EAAE,MAAM,GAAG,OAAO,CAAC,QAAQ,EAAE,CAAC;IAoBnD,iEAAiE;IAC3D,WAAW,CAAC,OAAO,EAAE,MAAM,GAAG,MAAM,GAAG,OAAO,CAAC,MAAM,CAAC;IAQtD,WAAW,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,GAAG,SAAS,CAAC;IAQ5D,+EAA+E;IACzE,KAAK,CAAC,MAAM,EAAE,eAAe,EAAE,GAAG,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC;YAalD,WAAW;YAqBX,cAAc;IAsC5B,OAAO,CAAC,OAAO;CAGhB"}
+{"version":3,"file":"file-store.d.ts","sourceRoot":"","sources":["../../src/store/file-store.ts"],"names":[],"mappings":"AAGA,OAAO,EAAkB,KAAK,QAAQ,EAAE,KAAK,MAAM,EAAwB,MAAM,aAAa,CAAC;AAC/F,OAAO,EAAE,KAAK,eAAe,EAAE,KAAK,SAAS,EAAE,KAAK,QAAQ,EAAkB,MAAM,WAAW,CAAC;AAIhG,YAAY,EAAE,eAAe,EAAE,SAAS,EAAE,MAAM,WAAW,CAAC;AAE5D;;;;;;;;;GASG;AACH,qBAAa,SAAU,YAAW,QAAQ;IACxC,+EAA+E;IAC/E,QAAQ,CAAC,GAAG,EAAE,MAAM,CAAC;IACrB,OAAO,CAAC,QAAQ,CAAC,UAAU,CAAS;IACpC,OAAO,CAAC,QAAQ,CAAC,OAAO,CAAS;IACjC,OAAO,CAAC,QAAQ,CAAC,YAAY,CAAS;gBAE1B,GAAG,EAAE,MAAM;IAOvB,IAAI,CAAC,KAAK,EAAE,QAAQ,GAAG,OAAO,CAAC,IAAI,CAAC;IAIpC,sDAAsD;IAChD,MAAM,CAAC,KAAK,EAAE,QAAQ,GAAG,OAAO,CAAC,IAAI,CAAC;IAWtC,MAAM,CAAC,KAAK,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,GAAG,SAAS,CAAC;IAQxD,8CAA8C;IACxC,QAAQ,CAAC,MAAM,GAAE,SAAc,GAAG,OAAO,CAAC,MAAM,EAAE,CAAC;IAyBzD,4EAA4E;IACtE,SAAS,CAAC,KAAK,EAAE,MAAM,GAAG,OAAO,CAAC,QAAQ,EAAE,CAAC;IAoBnD,iEAAiE;IAC3D,WAAW,CAAC,OAAO,EAAE,MAAM,GAAG,MAAM,GAAG,OAAO,CAAC,MAAM,CAAC;IAQtD,WAAW,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,GAAG,SAAS,CAAC;IAa5D,+EAA+E;IACzE,KAAK,CAAC,MAAM,EAAE,eAAe,EAAE,GAAG,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC;YAalD,WAAW;YAqBX,cAAc;IAsC5B,OAAO,CAAC,OAAO;CAGhB"}

package/dist/store/file-store.js

@@ -2,6 +2,7 @@ import { createHash } from "node:crypto";
 import { appendFile, mkdir, readFile, readdir, rm, stat, writeFile } from "node:fs/promises";
 import { join } from "node:path";
 import { applyEvent, emptyRow } from "./events.js";
+import { isArtifactHash } from "./port.js";
 /**
  * The local-by-default run store (research Appendix C). `events.ndjson` is the
  * append-only source of truth; each run's row (`runs/<id>.json`) is the fold
@@ -100,6 +101,12 @@ export class FileStore {
         return hash;
     }
     async getArtifact(hash) {
+        // Before the join, not after. `hash` reaches here straight off a URL on
+        // both servers, and `join` resolves `..` happily, so an unchecked value is
+        // a read of any file this process can open. Nothing `putArtifact` returned
+        // is rejected by this, so a real lookup is unaffected.
+        if (!isArtifactHash(hash))
+            return undefined;
         try {
             return await readFile(join(this.artifactsDir, hash));
         }

package/dist/store/file-store.js.map

@@ -1 +1 @@
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package/dist/store/index.d.ts

@@ -1,4 +1,4 @@
-export { applyEvent, type ArtifactRef, emptyRow, type EventSink, foldRun, type GateStepRow, ROW_SCHEMA_VERSION, type RunEvent, type RunRow, } from "./events.js";
+export { applyEvent, type ArtifactRef, displayState, emptyRow, type EventSink, foldRun, type GateStepRow, IN_PROGRESS_STATE, ROW_SCHEMA_VERSION, type RunEvent, type RunRow, } from "./events.js";
 export { FileStore } from "./file-store.js";
 export type { RetentionPolicy, RunFilter, RunStore } from "./port.js";
 //# sourceMappingURL=index.d.ts.map

package/dist/store/index.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/store/index.ts"],"names":[],"mappings":"AAAA,OAAO,EACL,UAAU,EACV,KAAK,WAAW,EAChB,QAAQ,EACR,KAAK,SAAS,EACd,OAAO,EACP,KAAK,WAAW,EAChB,kBAAkB,EAClB,KAAK,QAAQ,EACb,KAAK,MAAM,GACZ,MAAM,aAAa,CAAC;AACrB,OAAO,EAAE,SAAS,EAAE,MAAM,iBAAiB,CAAC;AAC5C,YAAY,EAAE,eAAe,EAAE,SAAS,EAAE,QAAQ,EAAE,MAAM,WAAW,CAAC"}
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/store/index.ts"],"names":[],"mappings":"AAAA,OAAO,EACL,UAAU,EACV,KAAK,WAAW,EAChB,YAAY,EACZ,QAAQ,EACR,KAAK,SAAS,EACd,OAAO,EACP,KAAK,WAAW,EAChB,iBAAiB,EACjB,kBAAkB,EAClB,KAAK,QAAQ,EACb,KAAK,MAAM,GACZ,MAAM,aAAa,CAAC;AACrB,OAAO,EAAE,SAAS,EAAE,MAAM,iBAAiB,CAAC;AAC5C,YAAY,EAAE,eAAe,EAAE,SAAS,EAAE,QAAQ,EAAE,MAAM,WAAW,CAAC"}

package/dist/store/index.js

@@ -1,3 +1,3 @@
-export { applyEvent, emptyRow, foldRun, ROW_SCHEMA_VERSION, } from "./events.js";
+export { applyEvent, displayState, emptyRow, foldRun, IN_PROGRESS_STATE, ROW_SCHEMA_VERSION, } from "./events.js";
 export { FileStore } from "./file-store.js";
 //# sourceMappingURL=index.js.map

package/dist/store/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/store/index.ts"],"names":[],"mappings":"AAAA,OAAO,EACL,UAAU,EAEV,QAAQ,EAER,OAAO,EAEP,kBAAkB,GAGnB,MAAM,aAAa,CAAC;AACrB,OAAO,EAAE,SAAS,EAAE,MAAM,iBAAiB,CAAC"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/store/index.ts"],"names":[],"mappings":"AAAA,OAAO,EACL,UAAU,EAEV,YAAY,EACZ,QAAQ,EAER,OAAO,EAEP,iBAAiB,EACjB,kBAAkB,GAGnB,MAAM,aAAa,CAAC;AACrB,OAAO,EAAE,SAAS,EAAE,MAAM,iBAAiB,CAAC"}

package/dist/store/port.d.ts

@@ -50,4 +50,19 @@ export interface RunStore extends EventSink {
     /** Drop what the policy says is past keeping. */
     prune(policy: RetentionPolicy, now: number): Promise<void>;
 }
+/**
+ * True for a string that is a real artifact hash: 64 lowercase hex characters,
+ * exactly what `putArtifact` returns from a sha256 digest.
+ *
+ * This exists because artifact hashes arrive from URLs. A store keeps its
+ * artifacts in one flat directory and looks them up by joining the hash onto
+ * that path, so a "hash" of `../../secrets.env` reads a file the store does not
+ * own. `new URL()` leaves `%2F` encoded in a pathname, so a percent-encoded
+ * traversal survives a `split("/")` intact and only becomes slashes again at
+ * `decodeURIComponent`, which is late enough to look like an ordinary segment.
+ *
+ * Anything `putArtifact` produced passes. Anything else was never in the store
+ * to begin with, so rejecting it costs a caller nothing it could have had.
+ */
+export declare function isArtifactHash(value: string): boolean;
 //# sourceMappingURL=port.d.ts.map

package/dist/store/port.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"port.d.ts","sourceRoot":"","sources":["../../src/store/port.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,SAAS,EAAE,QAAQ,EAAE,MAAM,EAAE,MAAM,aAAa,CAAC;AAE/D;;;;;;;;;;;;;GAaG;AAEH,MAAM,WAAW,SAAS;IACxB,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,4EAA4E;IAC5E,KAAK,CAAC,EAAE,MAAM,CAAC;CAChB;AAED,MAAM,WAAW,eAAe;IAC9B,4DAA4D;IAC5D,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB,mDAAmD;IACnD,cAAc,CAAC,EAAE,MAAM,CAAC;IACxB,yDAAyD;IACzD,iBAAiB,CAAC,EAAE,MAAM,CAAC;IAC3B,oEAAoE;IACpE,gBAAgB,CAAC,EAAE,MAAM,CAAC;CAC3B;AAED;;;;;GAKG;AACH,MAAM,WAAW,QAAS,SAAQ,SAAS;IACzC,sDAAsD;IACtD,MAAM,CAAC,KAAK,EAAE,QAAQ,GAAG,OAAO,CAAC,IAAI,CAAC,CAAC;IACvC,oEAAoE;IACpE,MAAM,CAAC,KAAK,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,GAAG,SAAS,CAAC,CAAC;IACnD,mCAAmC;IACnC,QAAQ,CAAC,MAAM,CAAC,EAAE,SAAS,GAAG,OAAO,CAAC,MAAM,EAAE,CAAC,CAAC;IAChD,oDAAoD;IACpD,SAAS,CAAC,KAAK,EAAE,MAAM,GAAG,OAAO,CAAC,QAAQ,EAAE,CAAC,CAAC;IAC9C,mDAAmD;IACnD,WAAW,CAAC,OAAO,EAAE,MAAM,GAAG,MAAM,GAAG,OAAO,CAAC,MAAM,CAAC,CAAC;IACvD,yDAAyD;IACzD,WAAW,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,GAAG,SAAS,CAAC,CAAC;IACvD,iDAAiD;IACjD,KAAK,CAAC,MAAM,EAAE,eAAe,EAAE,GAAG,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC,CAAC;CAC5D"}
+{"version":3,"file":"port.d.ts","sourceRoot":"","sources":["../../src/store/port.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,SAAS,EAAE,QAAQ,EAAE,MAAM,EAAE,MAAM,aAAa,CAAC;AAE/D;;;;;;;;;;;;;GAaG;AAEH,MAAM,WAAW,SAAS;IACxB,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,4EAA4E;IAC5E,KAAK,CAAC,EAAE,MAAM,CAAC;CAChB;AAED,MAAM,WAAW,eAAe;IAC9B,4DAA4D;IAC5D,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB,mDAAmD;IACnD,cAAc,CAAC,EAAE,MAAM,CAAC;IACxB,yDAAyD;IACzD,iBAAiB,CAAC,EAAE,MAAM,CAAC;IAC3B,oEAAoE;IACpE,gBAAgB,CAAC,EAAE,MAAM,CAAC;CAC3B;AAED;;;;;GAKG;AACH,MAAM,WAAW,QAAS,SAAQ,SAAS;IACzC,sDAAsD;IACtD,MAAM,CAAC,KAAK,EAAE,QAAQ,GAAG,OAAO,CAAC,IAAI,CAAC,CAAC;IACvC,oEAAoE;IACpE,MAAM,CAAC,KAAK,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,GAAG,SAAS,CAAC,CAAC;IACnD,mCAAmC;IACnC,QAAQ,CAAC,MAAM,CAAC,EAAE,SAAS,GAAG,OAAO,CAAC,MAAM,EAAE,CAAC,CAAC;IAChD,oDAAoD;IACpD,SAAS,CAAC,KAAK,EAAE,MAAM,GAAG,OAAO,CAAC,QAAQ,EAAE,CAAC,CAAC;IAC9C,mDAAmD;IACnD,WAAW,CAAC,OAAO,EAAE,MAAM,GAAG,MAAM,GAAG,OAAO,CAAC,MAAM,CAAC,CAAC;IACvD,yDAAyD;IACzD,WAAW,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,GAAG,SAAS,CAAC,CAAC;IACvD,iDAAiD;IACjD,KAAK,CAAC,MAAM,EAAE,eAAe,EAAE,GAAG,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC,CAAC;CAC5D;AAED;;;;;;;;;;;;;GAaG;AACH,wBAAgB,cAAc,CAAC,KAAK,EAAE,MAAM,GAAG,OAAO,CAErD"}

package/dist/store/port.js

@@ -1,2 +1,18 @@
-export {};
+/**
+ * True for a string that is a real artifact hash: 64 lowercase hex characters,
+ * exactly what `putArtifact` returns from a sha256 digest.
+ *
+ * This exists because artifact hashes arrive from URLs. A store keeps its
+ * artifacts in one flat directory and looks them up by joining the hash onto
+ * that path, so a "hash" of `../../secrets.env` reads a file the store does not
+ * own. `new URL()` leaves `%2F` encoded in a pathname, so a percent-encoded
+ * traversal survives a `split("/")` intact and only becomes slashes again at
+ * `decodeURIComponent`, which is late enough to look like an ordinary segment.
+ *
+ * Anything `putArtifact` produced passes. Anything else was never in the store
+ * to begin with, so rejecting it costs a caller nothing it could have had.
+ */
+export function isArtifactHash(value) {
+    return /^[0-9a-f]{64}$/.test(value);
+}
 //# sourceMappingURL=port.js.map

package/dist/store/port.js.map

@@ -1 +1 @@
-{"version":3,"file":"port.js","sourceRoot":"","sources":["../../src/store/port.ts"],"names":[],"mappings":""}
+{"version":3,"file":"port.js","sourceRoot":"","sources":["../../src/store/port.ts"],"names":[],"mappings":"AAyDA;;;;;;;;;;;;;GAaG;AACH,MAAM,UAAU,cAAc,CAAC,KAAa;IAC1C,OAAO,gBAAgB,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;AACtC,CAAC"}

package/dist/triage/engine.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"engine.d.ts","sourceRoot":"","sources":["../../src/triage/engine.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,OAAO,EAAa,MAAM,qBAAqB,CAAC;AAC9D,OAAO,KAAK,EAAe,eAAe,EAAE,MAAM,qBAAqB,CAAC;AAExE,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,oBAAoB,CAAC;AAGtD,OAAO,KAAK,EAAE,KAAK,EAAE,IAAI,EAAE,MAAM,EAAE,YAAY,EAAY,MAAM,kBAAkB,CAAC;AACpF,OAAO,EAAE,KAAK,YAAY,EAAmB,MAAM,YAAY,CAAC;AAGhE,oFAAoF;AACpF,eAAO,MAAM,gBAAgB,2BAA2B,CAAC;AAKzD,kDAAkD;AAClD,MAAM,WAAW,gBAAgB;IAC/B,YAAY,EAAE,OAAO,CAAC;IACtB,OAAO,EAAE,YAAY,EAAE,CAAC;CACzB;AAED,MAAM,WAAW,UAAU;IACzB,QAAQ,EAAE,MAAM,CAAC;IACjB,MAAM,EAAE,YAAY,CAAC;IACrB,OAAO,EAAE,OAAO,CAAC;IACjB,KAAK,EAAE,KAAK,CAAC;IACb,IAAI,EAAE,IAAI,CAAC;IACX,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,6EAA6E;IAC7E,WAAW,CAAC,EAAE,WAAW,CAAC;IAC1B,4EAA4E;IAC5E,gBAAgB,CAAC,EAAE,MAAM,CAAC;CAC3B;AAmBD;;;;;;GAMG;AACH,wBAAsB,UAAU,CAC9B,IAAI,EAAE,UAAU,EAChB,MAAM,EAAE,eAAe,GACtB,OAAO,CAAC,gBAAgB,CAAC,CAwB3B"}
+{"version":3,"file":"engine.d.ts","sourceRoot":"","sources":["../../src/triage/engine.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,OAAO,EAAa,MAAM,qBAAqB,CAAC;AAC9D,OAAO,KAAK,EAAe,eAAe,EAAE,MAAM,qBAAqB,CAAC;AAExE,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,oBAAoB,CAAC;AAItD,OAAO,KAAK,EAAE,KAAK,EAAE,IAAI,EAAE,MAAM,EAAE,YAAY,EAAY,MAAM,kBAAkB,CAAC;AACpF,OAAO,EAAE,KAAK,YAAY,EAAmB,MAAM,YAAY,CAAC;AAGhE,oFAAoF;AACpF,eAAO,MAAM,gBAAgB,2BAA2B,CAAC;AAKzD,kDAAkD;AAClD,MAAM,WAAW,gBAAgB;IAC/B,YAAY,EAAE,OAAO,CAAC;IACtB,OAAO,EAAE,YAAY,EAAE,CAAC;CACzB;AAED,MAAM,WAAW,UAAU;IACzB,QAAQ,EAAE,MAAM,CAAC;IACjB,MAAM,EAAE,YAAY,CAAC;IACrB,OAAO,EAAE,OAAO,CAAC;IACjB,KAAK,EAAE,KAAK,CAAC;IACb,IAAI,EAAE,IAAI,CAAC;IACX,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,6EAA6E;IAC7E,WAAW,CAAC,EAAE,WAAW,CAAC;IAC1B,4EAA4E;IAC5E,gBAAgB,CAAC,EAAE,MAAM,CAAC;CAC3B;AAmBD;;;;;;GAMG;AACH,wBAAsB,UAAU,CAC9B,IAAI,EAAE,UAAU,EAChB,MAAM,EAAE,eAAe,GACtB,OAAO,CAAC,gBAAgB,CAAC,CAwB3B"}

package/dist/triage/engine.js

@@ -1,5 +1,6 @@
 import { stageArtifacts } from "../global/stage.js";
 import { branchName } from "../loop/branch.js";
+import { writeCommentThread } from "../loop/comments.js";
 import { mapWithConcurrency } from "../loop/concurrency.js";
 import { applyTriagePlan } from "./apply.js";
 import { parseTriagePlan } from "./plan.js";
@@ -68,6 +69,7 @@ async function triageItem(deps, config, prompt, item, logger) {
         if (deps.globalStore !== undefined && config.artifacts.length > 0) {
             await stageArtifacts(deps.backend, workspace, deps.globalStore, config.artifacts, logger);
         }
+        await writeCommentThread(deps.source, deps.backend, workspace, item, logger);
         const agentConfig = {
             kind: config.agent.kind,
             prompt,

package/dist/triage/engine.js.map

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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "ghostrail",
-  "version": "0.15.1",
+  "version": "0.16.0",
   "description": "Open source software factory for coding agents. Config-driven loops, pluggable isolation backends, human merge gate.",
   "keywords": [
     "ai-agents",
@@ -38,10 +38,12 @@
     "test": "vitest run",
     "test:unit": "vitest run",
     "test:watch": "vitest",
+    "test:e2e": "playwright test",
     "prepublishOnly": "pnpm lint && pnpm typecheck && pnpm test:unit && pnpm build"
   },
   "devDependencies": {
     "@biomejs/biome": "1.9.4",
+    "@playwright/test": "^1.62.1",
     "@types/node": "^22.10.2",
     "fast-check": "^4.9.0",
     "typescript": "^5.7.2",

package/skill/ghostrail/SKILL.md

@@ -5,7 +5,7 @@ user-invocable: true
 argument-hint: "[customize | init | update | doctor | status | run | respond | triage]"
 license: Apache-2.0
 metadata:
-  version: 0.3.0
+  version: 0.5.0
 allowed-tools:
   - Read
   - Write
@@ -68,6 +68,13 @@ this tailors them to *this* repo. Never guess: read before proposing.
      they should be. Ask rather than invent tracker identifiers.
 4. **Do not touch** `[output].auto_merge` (it must stay `false`) or invent
    credentials.
+5. **Never run `<GR> run`, `<GR> triage`, or `<GR> respond` to check your edits.**
+   Those act on real tracker items, per the confirm-first rule under **run ·
+   respond · triage** below, and that rule has no "just checking" exception:
+   zero eligible items still means the command executed for real. If you want
+   to confirm `ghostrail.toml` still parses, read it back and reason about it,
+   or ask the user before running anything beyond `<GR> --help`-style
+   inspection; do not treat execution as a substitute for reading.
 
 State plainly what you changed and what still needs a human (tracker IDs, tokens).
 
@@ -157,33 +164,20 @@ Two things to tell the user plainly:
 
 ## doctor
 
-Diagnose a setup without changing anything. Check and report each, with the fix:
-
-- **CLI** — which form resolved, and its `<GR> version`.
-- **Config** — `ghostrail.toml` present, and it parses. Any ghostrail command
-  prints config errors with a dotted path; use that to point at the exact key.
-- **Prompts** — every path referenced by `[agent].prompt`, `[respond].prompt`,
-  and `[triage].prompt` exists.
-- **Gate** — `[gate].commands` is non-empty for a code factory, and the commands
-  actually exist in the project's scripts.
-- **Credentials** — report which of `LINEAR_API_KEY`, `GH_TOKEN`/`GITHUB_TOKEN`,
-  and `ANTHROPIC_API_KEY` **or** `CLAUDE_CODE_OAUTH_TOKEN` are set. Report only
-  set/unset, **never print a value**. Note that `ANTHROPIC_API_KEY` wins over the
-  OAuth token, so it must be unset to bill a Pro/Max subscription. Remember they
-  can come from a file as well as the environment: `~/.config/ghostrail/secrets.env`
-  and a repo's `.ghostrail.env`, which beat an exported variable of the same name.
-  When something is missing, the fix to suggest is `ghostrail secrets-setup --write`,
-  which scaffolds that file and opens it in the user's editor. Never offer to fill
-  in a value yourself.
-- **GitHub** — `gh auth status` succeeds.
-- **Container backend**, if `[backend].kind = "container"` — the configured
-  `image` exists locally (`docker images`). If not, the fix is
-  `ghostrail image build` (add `--tag` when the config names something other
-  than `ghostrail-factory:local`). No repo checkout is needed; the Dockerfile
-  ships in the package. A `local-worktree` factory needs no image at all, so do
-  not report a missing one as a problem.
-
-Finish with a short ordered list of what to fix first.
+Run `<GR> doctor` and relay its output. It probes the setup itself — including a
+real `claude -p` call inside the configured backend and a cheap Linear query, not
+just presence checks — so describe what it actually did rather than re-deriving
+checks here (that would drift from what the command does). It never prints a
+credential value, only names and outcomes. Add `--quick` when the operator wants
+a fast, no-network answer instead (it will say plainly which checks it skipped).
+Add `--json` when the output needs to be machine-parsed (e.g. for the board).
+
+`doctor` reports whether `ghostrail.toml` parses, so there is never a reason to
+run `<GR> run`, `<GR> triage`, or `<GR> respond` just to surface a parse error;
+those execute for real even with zero eligible items.
+
+`doctor` exits non-zero when any check fails, and prints an ordered "fix first"
+list; lead with that list, then offer to walk through it one item at a time.
 
 ---
 
@@ -199,7 +193,10 @@ view, suggest `<GR> board`.
 ## run · respond · triage
 
 Passthroughs. Before executing, state what will happen and confirm, because these
-act on real tracker items and can open real pull requests.
+act on real tracker items and can open real pull requests. This confirmation is
+required every time, including when the only goal is to see whether config
+parses or a prompt renders: "0 eligible items, nothing happened" is still a
+real execution, not a no-op you were entitled to skip asking about.
 
 - `run` — one tick over the fix queue. **If `[output].open_pr` is true, this opens
   a real PR.** Suggest a dry run first (`open_pr = false`) for a new setup.
@@ -216,6 +213,10 @@ and any PR URL. On failure, quote the actual error rather than paraphrasing.
 
 - **Never** set `auto_merge = true` or merge a factory PR. A human owns merges.
 - **Never** print or commit a secret. Report credentials as set/unset only.
+- **Never** run `run`, `triage`, or `respond` without asking first, including
+  from inside **customize**, **init**, **update**, or **doctor** — verifying
+  that a config or prompt change is well-formed is never a reason to skip the
+  confirmation those commands require.
 - Prefer editing the scaffolded prompts over rewriting them; they already encode
   the `.ghostrail/result.json` and `.ghostrail/triage.json` contracts the factory
   depends on, and breaking those breaks the loop.

package/templates/code/prompts/resolve-issue.md

@@ -17,6 +17,13 @@ Match the surrounding code: its style, patterns, and test conventions.
 
 {{description}}
 
+## Prior discussion
+
+If `.ghostrail/comments.md` exists, read it. It holds the comment thread on
+this issue, oldest first, and it can include a question a previous run of the
+factory asked and a human's reply. Treat an already-answered question as
+settled and act on the answer; do not ask it again.
+
 ## What to do
 1. Locate the relevant code and understand how it is structured.
 2. Make the smallest correct change that resolves the issue.

package/templates/code/prompts/triage.md

@@ -14,6 +14,13 @@ git and do not change any source files except the two output files below.
 
 {{description}}
 
+## Prior discussion
+
+If `.ghostrail/comments.md` exists, read it. It holds the comment thread on
+this issue, oldest first, and it can include a question a previous triage pass
+asked and a human's reply. Treat an already-answered question as settled and
+act on the answer; do not ask it again.
+
 ## What to do
 1. Read the issue and enough of the codebase to judge its scope.
 2. Decide:

package/templates/content/prompts/draft.md

@@ -13,6 +13,13 @@ git: the factory owns commits, branches, and PRs.
 
 {{description}}
 
+## Prior discussion
+
+If `.ghostrail/comments.md` exists, read it. It holds the comment thread on
+this item, oldest first, and it can include a question a previous run of the
+factory asked and a human's reply. Treat an already-answered question as
+settled and act on the answer; do not ask it again.
+
 ## Shared references
 Read any files under `.ghostrail/artifacts/` (voice and style, formats,
 strategy). Follow them closely: they define how this work should read.