gff-nostream 3.0.10 → 3.0.11
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/api.js +7 -3
- package/dist/api.js.map +1 -1
- package/esm/api.js +7 -3
- package/esm/api.js.map +1 -1
- package/package.json +5 -5
- package/src/api.ts +8 -3
package/dist/api.js
CHANGED
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@@ -177,14 +177,18 @@ function parseRecordsJBrowse(records) {
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items.push(feature);
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}
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else {
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+
// A parentless line is a top-level item. Every line of a top-level
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+
// discontinuous feature (e.g. cDNA_match/EST_match spanning several
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182
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+
// segments under one shared ID, with no Parent) is its own top-level
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+
// item, so push here regardless of whether the id is already registered.
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+
if (parents.length === 0) {
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+
items.push(feature);
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+
}
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// Register the id only the first time it is seen. Continuation lines
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// (multi-location features such as a CDS spanning several segments share
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// one ID across lines) skip registration but must still be attached to
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// their parent below, so this is independent of the parent handling.
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if (id && !byId.has(id)) {
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-
if (parents.length === 0) {
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-
items.push(feature);
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-
}
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byId.set(id, feature);
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const waiting = orphans.get(id);
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if (waiting) {
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package/dist/api.js.map
CHANGED
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"api.js","sourceRoot":"","sources":["../src/api.ts"],"names":[],"mappings":";;AA6BA,kCAKC;AAoCD,0CAEC;AAQD,wDAEC;AA2BD,oCAyEC;AASD,
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1
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+
{"version":3,"file":"api.js","sourceRoot":"","sources":["../src/api.ts"],"names":[],"mappings":";;AA6BA,kCAKC;AAoCD,0CAEC;AAQD,wDAEC;AA2BD,oCAyEC;AASD,kDAuDC;AAtPD,uCAKkB;AAuBlB,qFAAqF;AACrF,SAAgB,WAAW,CAAC,IAAY;IACtC,MAAM,EAAE,GAAG,IAAI,CAAC,OAAO,CAAC,IAAI,CAAC,CAAA;IAC7B,MAAM,EAAE,GAAG,IAAI,CAAC,OAAO,CAAC,IAAI,EAAE,EAAE,GAAG,CAAC,CAAC,CAAA;IACrC,MAAM,EAAE,GAAG,IAAI,CAAC,OAAO,CAAC,IAAI,EAAE,EAAE,GAAG,CAAC,CAAC,CAAA;IACrC,OAAO,IAAI,CAAC,KAAK,CAAC,EAAE,GAAG,CAAC,EAAE,EAAE,CAAC,CAAA;AAC/B,CAAC;AAED,kFAAkF;AAClF,SAAS,YAAY,CAAI,OAAyB,EAAE,GAAW,EAAE,KAAQ;IACvE,MAAM,GAAG,GAAG,OAAO,CAAC,GAAG,CAAC,GAAG,CAAC,CAAA;IAC5B,IAAI,GAAG,EAAE,CAAC;QACR,GAAG,CAAC,IAAI,CAAC,KAAK,CAAC,CAAA;IACjB,CAAC;SAAM,CAAC;QACN,OAAO,CAAC,GAAG,CAAC,GAAG,EAAE,CAAC,KAAK,CAAC,CAAC,CAAA;IAC3B,CAAC;AACH,CAAC;AAED;;;;GAIG;AACH,SAAS,WAAW,CAAC,KAAc;IACjC,MAAM,CAAC,GAAY,KAAK,CAAC,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,KAAK,CAAA;IAC1D,OAAO,OAAO,CAAC,KAAK,QAAQ,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,SAAS,CAAA;AAC9C,CAAC;AAED,SAAS,aAAa,CAAC,KAAc;IACnC,IAAI,KAAK,CAAC,OAAO,CAAC,KAAK,CAAC,EAAE,CAAC;QACzB,OAAO,KAAK,CAAC,MAAM,CAAC,CAAC,CAAC,EAAe,EAAE,CAAC,OAAO,CAAC,KAAK,QAAQ,CAAC,CAAA;IAChE,CAAC;IACD,OAAO,OAAO,KAAK,KAAK,QAAQ,CAAC,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,EAAE,CAAA;AACjD,CAAC;AAED;;;;;;GAMG;AACH,SAAgB,eAAe,CAAC,GAAW;IACzC,OAAO,YAAY,CAAC,eAAe,CAAC,GAAG,CAAC,CAAC,CAAA;AAC3C,CAAC;AAED;;;;;GAKG;AACH,SAAgB,sBAAsB,CAAC,GAAW;IAChD,OAAO,mBAAmB,CAAC,eAAe,CAAC,GAAG,CAAC,CAAC,CAAA;AAClD,CAAC;AAED,SAAS,eAAe,CAAC,GAAW;IAClC,MAAM,KAAK,GAAG,GAAG,CAAC,KAAK,CAAC,OAAO,CAAC,CAAA;IAChC,MAAM,OAAO,GAAiB,EAAE,CAAA;IAChC,KAAK,MAAM,IAAI,IAAI,KAAK,EAAE,CAAC;QACzB,IAAI,IAAI,CAAC,UAAU,CAAC,SAAS,CAAC,IAAI,IAAI,CAAC,UAAU,CAAC,GAAG,CAAC,EAAE,CAAC;YACvD,MAAK;QACP,CAAC;QACD,IAAI,IAAI,CAAC,MAAM,KAAK,CAAC,IAAI,IAAI,CAAC,UAAU,CAAC,GAAG,CAAC,EAAE,CAAC;YAC9C,SAAQ;QACV,CAAC;QACD,OAAO,CAAC,IAAI,CAAC;YACX,IAAI;YACJ,UAAU,EAAE,IAAI,CAAC,QAAQ,CAAC,GAAG,CAAC;SAC/B,CAAC,CAAA;IACJ,CAAC;IACD,OAAO,OAAO,CAAA;AAChB,CAAC;AAED;;;;;;GAMG;AACH,SAAgB,YAAY,CAAC,OAAqB;IAChD,MAAM,KAAK,GAAkB,EAAE,CAAA;IAC/B,MAAM,IAAI,GAAG,IAAI,GAAG,EAAuB,CAAA;IAC3C,MAAM,OAAO,GAAG,IAAI,GAAG,EAAyB,CAAA;IAEhD,KAAK,MAAM,MAAM,IAAI,OAAO,EAAE,CAAC;QAC7B,MAAM,MAAM,GAAG,MAAM,CAAC,UAAU;YAC9B,CAAC,CAAC,IAAA,sBAAY,EAAC,MAAM,CAAC,IAAI,CAAC;YAC3B,CAAC,CAAC,IAAA,gCAAsB,EAAC,MAAM,CAAC,IAAI,CAAC,CAAA;QACvC,MAAM,WAAW,GAA4B;YAC3C,GAAG,MAAM;YACT,cAAc,EAAE,EAAE;YAClB,gBAAgB,EAAE,EAAE;SACrB,CAAA;QAED,IAAI,MAAM,CAAC,QAAQ,KAAK,SAAS,EAAE,CAAC;YAClC,WAAW,CAAC,UAAU,KAAK,EAAE,CAAA;YAC7B,WAAW,CAAC,UAAU,CAAC,SAAS,GAAG,CAAC,MAAM,CAAC,MAAM,CAAC,QAAQ,CAAC,CAAC,CAAA;QAC9D,CAAC;QAED,MAAM,KAAK,GAAG,WAAW,CAAC,UAAU,CAAA;QACpC,MAAM,GAAG,GAAG,KAAK,EAAE,EAAE,CAAA;QACrB,MAAM,OAAO,GAAG,KAAK,EAAE,MAAM,CAAA;QAE7B,IAAI,CAAC,GAAG,IAAI,CAAC,OAAO,EAAE,CAAC;YACrB,KAAK,CAAC,IAAI,CAAC,CAAC,WAAW,CAAC,CAAC,CAAA;QAC3B,CAAC;aAAM,CAAC;YACN,IAAI,OAAoB,CAAA;YACxB,IAAI,GAAG,EAAE,CAAC;gBACR,MAAM,EAAE,GAAG,GAAG,CAAC,CAAC,CAAE,CAAA;gBAClB,MAAM,QAAQ,GAAG,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,CAAA;gBAC7B,IAAI,QAAQ,EAAE,CAAC;oBACb,qEAAqE;oBACrE,kEAAkE;oBAClE,+BAA+B;oBAC/B,WAAW,CAAC,cAAc,GAAG,QAAQ,CAAC,CAAC,CAAE,CAAC,cAAc,CAAA;oBACxD,WAAW,CAAC,gBAAgB,GAAG,QAAQ,CAAC,CAAC,CAAE,CAAC,gBAAgB,CAAA;oBAC5D,QAAQ,CAAC,IAAI,CAAC,WAAW,CAAC,CAAA;oBAC1B,OAAO,GAAG,QAAQ,CAAA;gBACpB,CAAC;qBAAM,CAAC;oBACN,OAAO,GAAG,CAAC,WAAW,CAAC,CAAA;oBACvB,IAAI,CAAC,OAAO,EAAE,CAAC;wBACb,KAAK,CAAC,IAAI,CAAC,OAAO,CAAC,CAAA;oBACrB,CAAC;oBACD,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,OAAO,CAAC,CAAA;oBACrB,MAAM,OAAO,GAAG,OAAO,CAAC,GAAG,CAAC,EAAE,CAAC,CAAA;oBAC/B,IAAI,OAAO,EAAE,CAAC;wBACZ,KAAK,MAAM,CAAC,IAAI,OAAO,EAAE,CAAC;4BACxB,WAAW,CAAC,cAAc,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;wBACpC,CAAC;wBACD,OAAO,CAAC,MAAM,CAAC,EAAE,CAAC,CAAA;oBACpB,CAAC;gBACH,CAAC;YACH,CAAC;iBAAM,CAAC;gBACN,OAAO,GAAG,CAAC,WAAW,CAAC,CAAA;YACzB,CAAC;YAED,IAAI,OAAO,EAAE,CAAC;gBACZ,KAAK,MAAM,QAAQ,IAAI,OAAO,EAAE,CAAC;oBAC/B,MAAM,MAAM,GAAG,IAAI,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAA;oBACjC,IAAI,MAAM,EAAE,CAAC;wBACX,4DAA4D;wBAC5D,mCAAmC;wBACnC,MAAM,CAAC,CAAC,CAAE,CAAC,cAAc,CAAC,IAAI,CAAC,OAAO,CAAC,CAAA;oBACzC,CAAC;yBAAM,CAAC;wBACN,YAAY,CAAC,OAAO,EAAE,QAAQ,EAAE,OAAO,CAAC,CAAA;oBAC1C,CAAC;gBACH,CAAC;YACH,CAAC;QACH,CAAC;IACH,CAAC;IAED,OAAO,KAAK,CAAA;AACd,CAAC;AAED;;;;;;GAMG;AACH,SAAgB,mBAAmB,CAAC,OAAqB;IACvD,MAAM,KAAK,GAAqB,EAAE,CAAA;IAClC,MAAM,IAAI,GAAG,IAAI,GAAG,EAA0B,CAAA;IAC9C,MAAM,OAAO,GAAG,IAAI,GAAG,EAA4B,CAAA;IAEnD,KAAK,MAAM,MAAM,IAAI,OAAO,EAAE,CAAC;QAC7B,MAAM,OAAO,GAAG,MAAM,CAAC,UAAU;YAC/B,CAAC,CAAC,IAAA,6BAAmB,EAAC,MAAM,CAAC,IAAI,CAAC;YAClC,CAAC,CAAC,IAAA,uCAA6B,EAAC,MAAM,CAAC,IAAI,CAAC,CAAA;QAE9C,IAAI,MAAM,CAAC,QAAQ,KAAK,SAAS,EAAE,CAAC;YAClC,OAAO,CAAC,SAAS,GAAG,MAAM,CAAC,MAAM,CAAC,QAAQ,CAAC,CAAA;QAC7C,CAAC;QAED,MAAM,EAAE,GAAG,WAAW,CAAC,OAAO,CAAC,EAAE,CAAC,CAAA;QAClC,MAAM,OAAO,GAAG,aAAa,CAAC,OAAO,CAAC,MAAM,CAAC,CAAA;QAE7C,IAAI,CAAC,EAAE,IAAI,OAAO,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YAChC,KAAK,CAAC,IAAI,CAAC,OAAO,CAAC,CAAA;QACrB,CAAC;aAAM,CAAC;YACN,mEAAmE;YACnE,oEAAoE;YACpE,qEAAqE;YACrE,yEAAyE;YACzE,IAAI,OAAO,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;gBACzB,KAAK,CAAC,IAAI,CAAC,O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package/esm/api.js
CHANGED
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@@ -170,14 +170,18 @@ export function parseRecordsJBrowse(records) {
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items.push(feature);
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}
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else {
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// A parentless line is a top-level item. Every line of a top-level
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+
// discontinuous feature (e.g. cDNA_match/EST_match spanning several
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175
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+
// segments under one shared ID, with no Parent) is its own top-level
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// item, so push here regardless of whether the id is already registered.
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if (parents.length === 0) {
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items.push(feature);
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}
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// Register the id only the first time it is seen. Continuation lines
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// (multi-location features such as a CDS spanning several segments share
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175
182
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// one ID across lines) skip registration but must still be attached to
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176
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// their parent below, so this is independent of the parent handling.
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177
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if (id && !byId.has(id)) {
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-
if (parents.length === 0) {
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-
items.push(feature);
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-
}
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byId.set(id, feature);
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const waiting = orphans.get(id);
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if (waiting) {
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package/esm/api.js.map
CHANGED
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@@ -1 +1 @@
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1
|
-
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|
|
1
|
+
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|
package/package.json
CHANGED
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
{
|
|
2
2
|
"name": "gff-nostream",
|
|
3
|
-
"version": "3.0.
|
|
3
|
+
"version": "3.0.11",
|
|
4
4
|
"description": "utilities to read GFF3 data",
|
|
5
5
|
"license": "MIT",
|
|
6
6
|
"repository": {
|
|
@@ -48,13 +48,13 @@
|
|
|
48
48
|
],
|
|
49
49
|
"devDependencies": {
|
|
50
50
|
"@eslint/js": "^10.0.1",
|
|
51
|
-
"@types/node": "^25.
|
|
52
|
-
"eslint": "^10.4.
|
|
51
|
+
"@types/node": "^25.9.1",
|
|
52
|
+
"eslint": "^10.4.1",
|
|
53
53
|
"eslint-plugin-import-x": "^4.16.2",
|
|
54
54
|
"prettier": "^3.8.3",
|
|
55
55
|
"rimraf": "^6.1.3",
|
|
56
56
|
"typescript": "^6.0.3",
|
|
57
|
-
"typescript-eslint": "^8.
|
|
58
|
-
"vitest": "^4.1.
|
|
57
|
+
"typescript-eslint": "^8.60.0",
|
|
58
|
+
"vitest": "^4.1.7"
|
|
59
59
|
}
|
|
60
60
|
}
|
package/src/api.ts
CHANGED
|
@@ -209,14 +209,19 @@ export function parseRecordsJBrowse(records: ParseInput[]): JBrowseFeature[] {
|
|
|
209
209
|
if (!id && parents.length === 0) {
|
|
210
210
|
items.push(feature)
|
|
211
211
|
} else {
|
|
212
|
+
// A parentless line is a top-level item. Every line of a top-level
|
|
213
|
+
// discontinuous feature (e.g. cDNA_match/EST_match spanning several
|
|
214
|
+
// segments under one shared ID, with no Parent) is its own top-level
|
|
215
|
+
// item, so push here regardless of whether the id is already registered.
|
|
216
|
+
if (parents.length === 0) {
|
|
217
|
+
items.push(feature)
|
|
218
|
+
}
|
|
219
|
+
|
|
212
220
|
// Register the id only the first time it is seen. Continuation lines
|
|
213
221
|
// (multi-location features such as a CDS spanning several segments share
|
|
214
222
|
// one ID across lines) skip registration but must still be attached to
|
|
215
223
|
// their parent below, so this is independent of the parent handling.
|
|
216
224
|
if (id && !byId.has(id)) {
|
|
217
|
-
if (parents.length === 0) {
|
|
218
|
-
items.push(feature)
|
|
219
|
-
}
|
|
220
225
|
byId.set(id, feature)
|
|
221
226
|
const waiting = orphans.get(id)
|
|
222
227
|
if (waiting) {
|