gff-nostream 1.3.9 → 2.0.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/api.d.ts +23 -2
- package/dist/api.js +58 -3
- package/dist/api.js.map +1 -1
- package/dist/index.d.ts +3 -3
- package/dist/index.js +5 -3
- package/dist/index.js.map +1 -1
- package/dist/parse.d.ts +3 -16
- package/dist/parse.js +78 -120
- package/dist/parse.js.map +1 -1
- package/dist/util.d.ts +1 -0
- package/dist/util.js +92 -59
- package/dist/util.js.map +1 -1
- package/esm/api.d.ts +23 -2
- package/esm/api.js +55 -2
- package/esm/api.js.map +1 -1
- package/esm/index.d.ts +3 -3
- package/esm/index.js +2 -2
- package/esm/index.js.map +1 -1
- package/esm/parse.d.ts +3 -16
- package/esm/parse.js +101 -138
- package/esm/parse.js.map +1 -1
- package/esm/util.d.ts +1 -0
- package/esm/util.js +82 -58
- package/esm/util.js.map +1 -1
- package/package.json +27 -16
- package/src/api.ts +77 -12
- package/src/index.ts +6 -5
- package/src/parse.ts +76 -141
- package/src/util.ts +91 -62
package/esm/util.js.map
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"name": "gff-nostream",
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"version": "2.0.0",
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"description": "utilities to read GFF3 data",
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"license": "MIT",
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"repository": "cmdcolin/gff-nostream",
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"rimraf": "^6.1.2",
|
|
60
|
+
"typescript": "^5.9.3",
|
|
61
|
+
"typescript-eslint": "^8.48.0",
|
|
62
|
+
"vitest": "^4.0.14"
|
|
52
63
|
}
|
|
53
64
|
}
|
package/src/api.ts
CHANGED
|
@@ -1,5 +1,12 @@
|
|
|
1
|
-
import Parser from './parse'
|
|
2
|
-
import {
|
|
1
|
+
import Parser from './parse.ts'
|
|
2
|
+
import { parseFieldsArray } from './util.ts'
|
|
3
|
+
|
|
4
|
+
import type { GFF3Feature, GFF3FeatureLine } from './util.ts'
|
|
5
|
+
|
|
6
|
+
export interface LineRecord {
|
|
7
|
+
fields: string[]
|
|
8
|
+
lineHash?: string | number
|
|
9
|
+
}
|
|
3
10
|
|
|
4
11
|
/**
|
|
5
12
|
* Synchronously parse a string containing GFF3 and return an array of the
|
|
@@ -15,7 +22,7 @@ export function parseStringSync(str: string): GFF3Feature[] {
|
|
|
15
22
|
featureCallback: arg => items.push(arg),
|
|
16
23
|
disableDerivesFromReferences: true,
|
|
17
24
|
errorCallback: err => {
|
|
18
|
-
throw err
|
|
25
|
+
throw new Error(err)
|
|
19
26
|
},
|
|
20
27
|
})
|
|
21
28
|
|
|
@@ -27,12 +34,70 @@ export function parseStringSync(str: string): GFF3Feature[] {
|
|
|
27
34
|
return items
|
|
28
35
|
}
|
|
29
36
|
|
|
30
|
-
|
|
31
|
-
|
|
32
|
-
|
|
33
|
-
|
|
34
|
-
|
|
35
|
-
|
|
36
|
-
|
|
37
|
-
|
|
38
|
-
|
|
37
|
+
/**
|
|
38
|
+
* Synchronously parse an array of strings containing GFF3 and return an array of the
|
|
39
|
+
* parsed items.
|
|
40
|
+
*
|
|
41
|
+
* @param arr - GFF3 array of strings
|
|
42
|
+
* @param inputOptions - Parsing options
|
|
43
|
+
* @returns array of parsed features, directives, comments and/or sequences
|
|
44
|
+
*/
|
|
45
|
+
export function parseArraySync(arr: string[]): GFF3Feature[] {
|
|
46
|
+
const items: GFF3Feature[] = []
|
|
47
|
+
const parser = new Parser({
|
|
48
|
+
featureCallback: arg => items.push(arg),
|
|
49
|
+
disableDerivesFromReferences: true,
|
|
50
|
+
errorCallback: err => {
|
|
51
|
+
throw new Error(err)
|
|
52
|
+
},
|
|
53
|
+
})
|
|
54
|
+
|
|
55
|
+
for (const line of arr) {
|
|
56
|
+
parser.addLine(line)
|
|
57
|
+
}
|
|
58
|
+
parser.finish()
|
|
59
|
+
|
|
60
|
+
return items
|
|
61
|
+
}
|
|
62
|
+
|
|
63
|
+
/**
|
|
64
|
+
* Synchronously parse an array of LineRecord objects containing pre-split GFF3
|
|
65
|
+
* fields and return an array of the parsed items.
|
|
66
|
+
*
|
|
67
|
+
* @param records - Array of LineRecord objects with fields array and optional lineHash
|
|
68
|
+
* @returns array of parsed features
|
|
69
|
+
*/
|
|
70
|
+
export function parseRecordsSync(records: LineRecord[]): GFF3Feature[] {
|
|
71
|
+
const items: GFF3Feature[] = []
|
|
72
|
+
const parser = new Parser({
|
|
73
|
+
featureCallback: arg => items.push(arg),
|
|
74
|
+
disableDerivesFromReferences: true,
|
|
75
|
+
errorCallback: err => {
|
|
76
|
+
throw new Error(err)
|
|
77
|
+
},
|
|
78
|
+
})
|
|
79
|
+
|
|
80
|
+
for (const record of records) {
|
|
81
|
+
const featureLine: GFF3FeatureLine = parseFieldsArray(record.fields)
|
|
82
|
+
if (record.lineHash !== undefined) {
|
|
83
|
+
if (!featureLine.attributes) {
|
|
84
|
+
featureLine.attributes = {}
|
|
85
|
+
}
|
|
86
|
+
featureLine.attributes._lineHash = [String(record.lineHash)]
|
|
87
|
+
}
|
|
88
|
+
parser.addParsedFeatureLine(featureLine)
|
|
89
|
+
}
|
|
90
|
+
parser.finish()
|
|
91
|
+
|
|
92
|
+
return items
|
|
93
|
+
}
|
|
94
|
+
|
|
95
|
+
export type {
|
|
96
|
+
GFF3Comment,
|
|
97
|
+
GFF3Directive,
|
|
98
|
+
GFF3Feature,
|
|
99
|
+
GFF3FeatureLine,
|
|
100
|
+
GFF3FeatureLineWithRefs,
|
|
101
|
+
GFF3Item,
|
|
102
|
+
GFF3Sequence,
|
|
103
|
+
} from './util.ts'
|
package/src/index.ts
CHANGED
|
@@ -1,12 +1,13 @@
|
|
|
1
|
-
import { parseStringSync } from './api'
|
|
2
|
-
export { parseStringSync }
|
|
1
|
+
import { parseArraySync, parseRecordsSync, parseStringSync } from './api.ts'
|
|
2
|
+
export { parseArraySync, parseRecordsSync, parseStringSync }
|
|
3
3
|
|
|
4
4
|
export type {
|
|
5
5
|
GFF3Comment,
|
|
6
|
-
GFF3Feature,
|
|
7
6
|
GFF3Directive,
|
|
8
|
-
|
|
7
|
+
GFF3Feature,
|
|
9
8
|
GFF3FeatureLine,
|
|
9
|
+
GFF3FeatureLineWithRefs,
|
|
10
10
|
GFF3Item,
|
|
11
11
|
GFF3Sequence,
|
|
12
|
-
|
|
12
|
+
LineRecord,
|
|
13
|
+
} from './api.ts'
|
package/src/parse.ts
CHANGED
|
@@ -1,44 +1,15 @@
|
|
|
1
|
-
import * as GFF3 from './util'
|
|
1
|
+
import * as GFF3 from './util.ts'
|
|
2
2
|
|
|
3
3
|
const containerAttributes = {
|
|
4
4
|
Parent: 'child_features' as const,
|
|
5
5
|
Derives_from: 'derived_features' as const,
|
|
6
6
|
}
|
|
7
7
|
|
|
8
|
-
|
|
9
|
-
|
|
10
|
-
|
|
11
|
-
|
|
12
|
-
|
|
13
|
-
|
|
14
|
-
constructor(seqCallback: (sequence: GFF3.GFF3Sequence) => void) {
|
|
15
|
-
this.seqCallback = seqCallback
|
|
16
|
-
this.currentSequence = undefined
|
|
17
|
-
}
|
|
18
|
-
|
|
19
|
-
addLine(line: string): void {
|
|
20
|
-
const defMatch = /^>\s*(\S+)\s*(.*)/.exec(line)
|
|
21
|
-
if (defMatch) {
|
|
22
|
-
this._flush()
|
|
23
|
-
this.currentSequence = { id: defMatch[1], sequence: '' }
|
|
24
|
-
if (defMatch[2]) {
|
|
25
|
-
this.currentSequence.description = defMatch[2].trim()
|
|
26
|
-
}
|
|
27
|
-
} else if (this.currentSequence && /\S/.test(line)) {
|
|
28
|
-
this.currentSequence.sequence += line.replaceAll(/\s/g, '')
|
|
29
|
-
}
|
|
30
|
-
}
|
|
31
|
-
|
|
32
|
-
private _flush() {
|
|
33
|
-
if (this.currentSequence) {
|
|
34
|
-
this.seqCallback(this.currentSequence)
|
|
35
|
-
}
|
|
36
|
-
}
|
|
37
|
-
|
|
38
|
-
finish(): void {
|
|
39
|
-
this._flush()
|
|
40
|
-
}
|
|
41
|
-
}
|
|
8
|
+
const featureLineRegex = /^\s*[^#\s>]/
|
|
9
|
+
const commentOrDirectiveRegex = /^\s*(#+)(.*)/
|
|
10
|
+
const blankLineRegex = /^\s*$/
|
|
11
|
+
const fastaStartRegex = /^\s*>/
|
|
12
|
+
const lineEndingRegex = /\r?\n?$/g
|
|
42
13
|
|
|
43
14
|
interface ParserArgs {
|
|
44
15
|
featureCallback?(feature: GFF3.GFF3Feature): void
|
|
@@ -46,7 +17,6 @@ interface ParserArgs {
|
|
|
46
17
|
commentCallback?(comment: GFF3.GFF3Comment): void
|
|
47
18
|
errorCallback?(error: string): void
|
|
48
19
|
directiveCallback?(directive: GFF3.GFF3Directive): void
|
|
49
|
-
sequenceCallback?(sequence: GFF3.GFF3Sequence): void
|
|
50
20
|
bufferSize?: number
|
|
51
21
|
disableDerivesFromReferences?: boolean
|
|
52
22
|
}
|
|
@@ -63,12 +33,7 @@ export default class Parser {
|
|
|
63
33
|
errorCallback: (error: string) => void
|
|
64
34
|
disableDerivesFromReferences: boolean
|
|
65
35
|
directiveCallback: (directive: GFF3.GFF3Directive) => void
|
|
66
|
-
sequenceCallback: (sequence: GFF3.GFF3Sequence) => void
|
|
67
36
|
bufferSize: number
|
|
68
|
-
fastaParser: FASTAParser | undefined = undefined
|
|
69
|
-
// if this is true, the parser ignores the
|
|
70
|
-
// rest of the lines in the file. currently
|
|
71
|
-
// set when the file switches over to FASTA
|
|
72
37
|
eof = false
|
|
73
38
|
lineNumber = 0
|
|
74
39
|
// features that we have to keep on hand for now because they
|
|
@@ -99,7 +64,6 @@ export default class Parser {
|
|
|
99
64
|
this.commentCallback = args.commentCallback || nullFunc
|
|
100
65
|
this.errorCallback = args.errorCallback || nullFunc
|
|
101
66
|
this.directiveCallback = args.directiveCallback || nullFunc
|
|
102
|
-
this.sequenceCallback = args.sequenceCallback || nullFunc
|
|
103
67
|
this.disableDerivesFromReferences =
|
|
104
68
|
args.disableDerivesFromReferences || false
|
|
105
69
|
|
|
@@ -108,68 +72,63 @@ export default class Parser {
|
|
|
108
72
|
}
|
|
109
73
|
|
|
110
74
|
addLine(line: string): void {
|
|
111
|
-
// if we have transitioned to a fasta section, just delegate to that parser
|
|
112
|
-
if (this.fastaParser) {
|
|
113
|
-
this.fastaParser.addLine(line)
|
|
114
|
-
return
|
|
115
|
-
}
|
|
116
75
|
if (this.eof) {
|
|
117
|
-
// otherwise, if we are done, ignore this line
|
|
118
76
|
return
|
|
119
77
|
}
|
|
120
78
|
|
|
121
79
|
this.lineNumber += 1
|
|
122
80
|
|
|
123
|
-
if (
|
|
81
|
+
if (featureLineRegex.test(line)) {
|
|
124
82
|
// feature line, most common case
|
|
125
83
|
this._bufferLine(line)
|
|
126
84
|
return
|
|
127
85
|
}
|
|
128
86
|
|
|
129
|
-
const match =
|
|
87
|
+
const match = commentOrDirectiveRegex.exec(line)
|
|
130
88
|
if (match) {
|
|
131
89
|
// directive or comment
|
|
132
90
|
const [, hashsigns] = match
|
|
133
91
|
let [, , contents] = match
|
|
134
92
|
|
|
135
|
-
if (hashsigns
|
|
93
|
+
if (hashsigns!.length === 3) {
|
|
136
94
|
// sync directive, all forward-references are resolved.
|
|
137
95
|
this._emitAllUnderConstructionFeatures()
|
|
138
|
-
} else if (hashsigns
|
|
96
|
+
} else if (hashsigns!.length === 2) {
|
|
139
97
|
const directive = GFF3.parseDirective(line)
|
|
140
98
|
if (directive) {
|
|
141
99
|
if (directive.directive === 'FASTA') {
|
|
142
100
|
this._emitAllUnderConstructionFeatures()
|
|
143
101
|
this.eof = true
|
|
144
|
-
this.fastaParser = new FASTAParser(this.sequenceCallback)
|
|
145
102
|
} else {
|
|
146
103
|
this._emitItem(directive)
|
|
147
104
|
}
|
|
148
105
|
}
|
|
149
106
|
} else {
|
|
150
|
-
|
|
151
|
-
this._emitItem({ comment: contents })
|
|
107
|
+
this._emitItem({ comment: contents!.trimStart() })
|
|
152
108
|
}
|
|
153
|
-
} else if (
|
|
109
|
+
} else if (blankLineRegex.test(line)) {
|
|
154
110
|
// blank line, do nothing
|
|
155
|
-
} else if (
|
|
156
|
-
// implicit beginning of a FASTA section
|
|
111
|
+
} else if (fastaStartRegex.test(line)) {
|
|
112
|
+
// implicit beginning of a FASTA section, stop parsing
|
|
157
113
|
this._emitAllUnderConstructionFeatures()
|
|
158
114
|
this.eof = true
|
|
159
|
-
this.fastaParser = new FASTAParser(this.sequenceCallback)
|
|
160
|
-
this.fastaParser.addLine(line)
|
|
161
115
|
} else {
|
|
162
116
|
// it's a parse error
|
|
163
|
-
const errLine = line.replaceAll(
|
|
117
|
+
const errLine = line.replaceAll(lineEndingRegex, '')
|
|
164
118
|
throw new Error(`GFF3 parse error. Cannot parse '${errLine}'.`)
|
|
165
119
|
}
|
|
166
120
|
}
|
|
167
121
|
|
|
122
|
+
addParsedFeatureLine(featureLine: GFF3.GFF3FeatureLine): void {
|
|
123
|
+
if (this.eof) {
|
|
124
|
+
return
|
|
125
|
+
}
|
|
126
|
+
this.lineNumber += 1
|
|
127
|
+
this._bufferParsedLine(featureLine)
|
|
128
|
+
}
|
|
129
|
+
|
|
168
130
|
finish(): void {
|
|
169
131
|
this._emitAllUnderConstructionFeatures()
|
|
170
|
-
if (this.fastaParser) {
|
|
171
|
-
this.fastaParser.finish()
|
|
172
|
-
}
|
|
173
132
|
this.endCallback()
|
|
174
133
|
}
|
|
175
134
|
|
|
@@ -194,11 +153,17 @@ export default class Parser {
|
|
|
194
153
|
delete this._completedReferences[id]
|
|
195
154
|
})
|
|
196
155
|
item.forEach(i => {
|
|
156
|
+
// eslint-disable-next-line @typescript-eslint/no-unnecessary-condition
|
|
197
157
|
if (i.child_features) {
|
|
198
|
-
i.child_features.forEach(c =>
|
|
158
|
+
i.child_features.forEach(c => {
|
|
159
|
+
_unbufferItem(c)
|
|
160
|
+
})
|
|
199
161
|
}
|
|
162
|
+
// eslint-disable-next-line @typescript-eslint/no-unnecessary-condition
|
|
200
163
|
if (i.derived_features) {
|
|
201
|
-
i.derived_features.forEach(d =>
|
|
164
|
+
i.derived_features.forEach(d => {
|
|
165
|
+
_unbufferItem(d)
|
|
166
|
+
})
|
|
202
167
|
}
|
|
203
168
|
})
|
|
204
169
|
}
|
|
@@ -229,26 +194,23 @@ export default class Parser {
|
|
|
229
194
|
|
|
230
195
|
// if we have any orphans hanging around still, this is a
|
|
231
196
|
// problem. die with a parse error
|
|
232
|
-
|
|
197
|
+
const orphanKeys = Object.keys(this._underConstructionOrphans)
|
|
198
|
+
if (orphanKeys.length) {
|
|
233
199
|
throw new Error(
|
|
234
|
-
`some features reference other features that do not exist in the file (or in the same '###' scope). ${
|
|
235
|
-
this._underConstructionOrphans,
|
|
236
|
-
).join(',')}`,
|
|
200
|
+
`some features reference other features that do not exist in the file (or in the same '###' scope). ${orphanKeys.join(',')}`,
|
|
237
201
|
)
|
|
238
202
|
}
|
|
239
203
|
}
|
|
240
204
|
|
|
241
|
-
// do the right thing with a newly-parsed feature line
|
|
242
205
|
private _bufferLine(line: string) {
|
|
243
|
-
|
|
244
|
-
|
|
245
|
-
|
|
246
|
-
|
|
247
|
-
|
|
248
|
-
|
|
249
|
-
|
|
206
|
+
this._bufferParsedLine(GFF3.parseFeature(line))
|
|
207
|
+
}
|
|
208
|
+
|
|
209
|
+
private _bufferParsedLine(rawFeatureLine: GFF3.GFF3FeatureLine) {
|
|
210
|
+
const featureLine = rawFeatureLine as GFF3.GFF3FeatureLineWithRefs
|
|
211
|
+
featureLine.child_features = []
|
|
212
|
+
featureLine.derived_features = []
|
|
250
213
|
|
|
251
|
-
// NOTE: a feature is an arrayref of one or more feature lines.
|
|
252
214
|
const ids = featureLine.attributes?.ID || []
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const parents = featureLine.attributes?.Parent || []
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const derives = this.disableDerivesFromReferences
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@@ -256,8 +218,6 @@ export default class Parser {
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: featureLine.attributes?.Derives_from || []
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if (!ids.length && !parents.length && !derives.length) {
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// if it has no IDs and does not refer to anything, we can just
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// output it
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this._emitItem([featureLine])
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return
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}
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@@ -266,7 +226,6 @@ export default class Parser {
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ids.forEach(id => {
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const existing = this._underConstructionById[id]
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if (existing) {
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// another location of the same feature
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if (existing[existing.length - 1].type !== featureLine.type) {
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this._parseError(
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`multi-line feature "${id}" has inconsistent types: "${
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@@ -277,8 +236,6 @@ export default class Parser {
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existing.push(featureLine)
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feature = existing
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} else {
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// haven't seen it yet, so buffer it so we can attach
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// child features to it
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feature = [featureLine]
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this._enforceBufferSizeLimit(1)
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@@ -287,13 +244,12 @@ export default class Parser {
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}
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this._underConstructionById[id] = feature
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// see if we have anything buffered that refers to it
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this._resolveReferencesTo(feature, id)
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}
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})
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// try to resolve all its references
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this._resolveReferencesFrom(
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+
// eslint-disable-next-line @typescript-eslint/no-unnecessary-condition
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feature || [featureLine],
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{ Parent: parents, Derives_from: derives },
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ids,
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@@ -302,20 +258,13 @@ export default class Parser {
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private _resolveReferencesTo(feature: GFF3.GFF3Feature, id: string) {
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const references = this._underConstructionOrphans[id]
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|
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// references is of the form
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-
// {
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|
-
// 'Parent' : [ orphans that have a Parent attr referencing this feature ],
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|
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// 'Derives_from' : [ orphans that have a Derives_from attr referencing this feature ],
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|
-
// }
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|
if (!references) {
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262
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return
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263
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}
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|
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|
-
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264
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+
for (const loc of feature) {
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|
314
265
|
loc.child_features.push(...references.Parent)
|
|
315
|
-
})
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|
316
|
-
feature.forEach(loc => {
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|
317
266
|
loc.derived_features.push(...references.Derives_from)
|
|
318
|
-
}
|
|
267
|
+
}
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|
319
268
|
delete this._underConstructionOrphans[id]
|
|
320
269
|
}
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|
321
270
|
|
|
@@ -329,72 +278,58 @@ export default class Parser {
|
|
|
329
278
|
references: { Parent: string[]; Derives_from: string[] },
|
|
330
279
|
ids: string[],
|
|
331
280
|
) {
|
|
332
|
-
|
|
333
|
-
function postSet(
|
|
334
|
-
obj: Record<string, Record<string, boolean | undefined> | undefined>,
|
|
335
|
-
slot1: string,
|
|
336
|
-
slot2: string,
|
|
337
|
-
) {
|
|
338
|
-
let subObj = obj[slot1]
|
|
339
|
-
if (!subObj) {
|
|
340
|
-
subObj = {}
|
|
341
|
-
obj[slot1] = subObj
|
|
342
|
-
}
|
|
343
|
-
const returnVal = subObj[slot2] || false
|
|
344
|
-
subObj[slot2] = true
|
|
345
|
-
return returnVal
|
|
346
|
-
}
|
|
347
|
-
|
|
348
|
-
references.Parent.forEach(toId => {
|
|
281
|
+
for (const toId of references.Parent) {
|
|
349
282
|
const otherFeature = this._underConstructionById[toId]
|
|
350
283
|
if (otherFeature) {
|
|
351
|
-
|
|
352
|
-
|
|
353
|
-
|
|
354
|
-
|
|
355
|
-
)
|
|
356
|
-
|
|
357
|
-
|
|
358
|
-
|
|
359
|
-
|
|
284
|
+
let dominated = false
|
|
285
|
+
for (const id of ids) {
|
|
286
|
+
const domKey = `Parent,${toId}`
|
|
287
|
+
const rec = this._completedReferences[id] || (this._completedReferences[id] = {})
|
|
288
|
+
if (rec[domKey]) {
|
|
289
|
+
dominated = true
|
|
290
|
+
}
|
|
291
|
+
rec[domKey] = true
|
|
292
|
+
}
|
|
293
|
+
if (!dominated) {
|
|
294
|
+
for (const location of otherFeature) {
|
|
295
|
+
location.child_features.push(feature)
|
|
296
|
+
}
|
|
360
297
|
}
|
|
361
298
|
} else {
|
|
362
299
|
let ref = this._underConstructionOrphans[toId]
|
|
363
300
|
if (!ref) {
|
|
364
|
-
ref = {
|
|
365
|
-
Parent: [],
|
|
366
|
-
Derives_from: [],
|
|
367
|
-
}
|
|
301
|
+
ref = { Parent: [], Derives_from: [] }
|
|
368
302
|
this._underConstructionOrphans[toId] = ref
|
|
369
303
|
}
|
|
370
304
|
ref.Parent.push(feature)
|
|
371
305
|
}
|
|
372
|
-
}
|
|
306
|
+
}
|
|
373
307
|
|
|
374
|
-
references.Derives_from
|
|
308
|
+
for (const toId of references.Derives_from) {
|
|
375
309
|
const otherFeature = this._underConstructionById[toId]
|
|
376
310
|
if (otherFeature) {
|
|
377
|
-
|
|
378
|
-
|
|
379
|
-
|
|
380
|
-
|
|
381
|
-
)
|
|
382
|
-
|
|
383
|
-
|
|
384
|
-
|
|
385
|
-
|
|
311
|
+
let dominated = false
|
|
312
|
+
for (const id of ids) {
|
|
313
|
+
const domKey = `Derives_from,${toId}`
|
|
314
|
+
const rec = this._completedReferences[id] || (this._completedReferences[id] = {})
|
|
315
|
+
if (rec[domKey]) {
|
|
316
|
+
dominated = true
|
|
317
|
+
}
|
|
318
|
+
rec[domKey] = true
|
|
319
|
+
}
|
|
320
|
+
if (!dominated) {
|
|
321
|
+
for (const location of otherFeature) {
|
|
322
|
+
location.derived_features.push(feature)
|
|
323
|
+
}
|
|
386
324
|
}
|
|
387
325
|
} else {
|
|
388
326
|
let ref = this._underConstructionOrphans[toId]
|
|
389
327
|
if (!ref) {
|
|
390
|
-
ref = {
|
|
391
|
-
Parent: [],
|
|
392
|
-
Derives_from: [],
|
|
393
|
-
}
|
|
328
|
+
ref = { Parent: [], Derives_from: [] }
|
|
394
329
|
this._underConstructionOrphans[toId] = ref
|
|
395
330
|
}
|
|
396
331
|
ref.Derives_from.push(feature)
|
|
397
332
|
}
|
|
398
|
-
}
|
|
333
|
+
}
|
|
399
334
|
}
|
|
400
335
|
}
|